Wall clock time and date at job start Tue Mar 31 2020 14:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.54907 * 2 1 4 4 N 1.46501 * 109.47206 * 90.99558 * 3 2 1 5 5 S 1.65600 * 119.99967 * 165.50706 * 4 3 2 6 6 O 1.42103 * 104.27981 * 308.93356 * 5 4 3 7 7 O 1.42095 * 104.27752 * 181.07160 * 5 4 3 8 8 C 1.81407 * 104.44901 * 65.00262 * 5 4 3 9 9 C 1.53004 * 109.47238 * 180.02562 * 8 5 4 10 10 C 1.50696 * 109.47007 * 179.97438 * 9 8 5 11 11 H 1.07998 * 119.99915 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99742 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99800 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99793 * 180.27547 * 12 10 9 15 15 H 1.48496 * 109.46771 * 269.72362 * 14 12 10 16 16 H 1.48498 * 109.46807 * 29.72754 * 14 12 10 17 17 H 1.48498 * 109.46779 * 149.72513 * 14 12 10 18 18 C 1.52997 * 117.50096 * 145.66668 * 2 1 3 19 19 C 1.52994 * 117.51997 * 214.29702 * 2 1 3 20 20 H 1.09000 * 117.50145 * 0.02562 * 19 2 1 21 21 C 1.50706 * 117.50132 * 145.02868 * 19 2 1 22 22 C 1.38237 * 119.99589 * 59.72337 * 21 19 2 23 23 C 1.38240 * 119.99399 * 179.76817 * 22 21 19 24 24 C 1.38232 * 120.00197 * 0.48536 * 23 22 21 25 25 C 1.38238 * 120.00044 * 359.79407 * 24 23 22 26 26 C 1.38228 * 119.99941 * 240.00467 * 21 19 2 27 27 H 1.08992 * 109.47113 * 66.47917 * 1 2 3 28 28 H 1.09000 * 109.47174 * 186.47719 * 1 2 3 29 29 H 1.08996 * 109.47299 * 306.47504 * 1 2 3 30 30 H 1.09004 * 109.47123 * 330.99713 * 3 2 1 31 31 H 1.09003 * 109.47151 * 210.99630 * 3 2 1 32 32 H 0.96998 * 120.00309 * 345.50929 * 4 3 2 33 33 H 1.08994 * 109.47040 * 60.00088 * 8 5 4 34 34 H 1.09004 * 109.46859 * 299.99961 * 8 5 4 35 35 H 1.09000 * 109.47382 * 59.99525 * 9 8 5 36 36 H 1.09000 * 109.46528 * 299.99918 * 9 8 5 37 37 H 0.96999 * 119.99417 * 180.02562 * 13 12 10 38 38 H 1.08998 * 117.50332 * 215.00463 * 18 2 1 39 39 H 1.09003 * 117.49956 * 0.02562 * 18 2 1 40 40 H 1.07996 * 120.00354 * 0.02562 * 22 21 19 41 41 H 1.08000 * 119.99733 * 180.25640 * 23 22 21 42 42 H 1.07995 * 119.99945 * 179.76343 * 24 23 22 43 43 H 1.07992 * 120.00038 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00607 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 2.4221 1.8106 1.3810 5 16 3.4345 3.0836 1.6925 6 8 4.6237 2.7677 0.9818 7 8 3.4347 3.1926 3.1093 8 6 2.6067 4.5139 0.9442 9 6 3.4546 5.7679 1.1668 10 6 2.7672 6.9559 0.5446 11 1 1.8201 6.8293 0.0412 12 6 3.3469 8.2048 0.6190 13 7 4.4995 8.3591 1.2334 14 14 2.4911 9.6787 -0.1455 15 1 2.9375 9.8350 -1.5531 16 1 1.0213 9.4697 -0.1125 17 1 2.8344 10.9031 0.6215 18 6 2.2364 -1.1206 0.7654 19 6 2.2369 -1.1209 -0.7646 20 1 1.6120 -1.8585 -1.2682 21 6 3.5299 -0.7809 -1.4601 22 6 4.6036 -0.3067 -0.7298 23 6 5.7911 0.0006 -1.3671 24 6 5.9018 -0.1567 -2.7360 25 6 4.8262 -0.6254 -3.4671 26 6 3.6403 -0.9377 -2.8290 27 1 -0.3633 0.4101 -0.9422 28 1 -0.3633 -1.0211 0.1159 29 1 -0.3634 0.6109 0.8263 30 1 1.5356 2.0959 -0.4983 31 1 3.1413 1.3283 -0.5292 32 1 1.9830 1.3499 2.1130 33 1 1.6285 4.6497 1.4053 34 1 2.4838 4.3439 -0.1255 35 1 4.4327 5.6318 0.7055 36 1 3.5778 5.9379 2.2364 37 1 4.9070 9.2378 1.2860 38 1 3.1713 -0.8746 1.2689 39 1 1.6112 -1.8582 1.2687 40 1 4.5159 -0.1803 0.3392 41 1 6.6313 0.3672 -0.7961 42 1 6.8283 0.0870 -3.2344 43 1 4.9125 -0.7480 -4.5365 44 1 2.8002 -1.3043 -3.4001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339012310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:08 Heat of formation + Delta-G solvation = -37.217774 kcal Electronic energy + Delta-G solvation = -25374.764663 eV Core-core repulsion = 21805.383306 eV Total energy + Delta-G solvation = -3569.381357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24990 -37.91085 -36.53551 -35.41010 -34.12731 -33.87885 -31.18337 -31.14715 -30.91506 -28.42806 -26.04708 -25.58661 -23.93140 -22.44721 -21.65515 -20.69191 -19.47477 -18.82066 -17.45825 -17.13535 -16.38932 -15.93088 -15.63311 -15.35148 -15.08024 -14.66416 -14.52913 -14.51936 -14.15604 -13.46389 -13.40134 -13.28779 -13.15244 -12.79494 -12.64130 -12.51140 -12.08138 -11.82445 -11.73689 -11.55787 -11.47082 -11.34263 -11.07598 -11.03486 -10.95005 -10.93255 -10.55245 -10.41144 -10.36452 -10.10122 -9.76793 -9.46114 -9.01623 -8.83027 -8.55091 -8.49560 -6.11769 -4.17155 0.82456 1.28200 1.41913 3.09225 3.26463 3.32635 3.35431 3.51345 3.92611 4.23140 4.29159 4.38972 4.54440 4.59363 4.68125 4.81178 4.88431 4.99467 5.04646 5.12497 5.23480 5.35097 5.39169 5.44881 5.51959 5.57070 5.63112 5.66848 5.69357 5.74198 5.84908 5.89002 6.01385 6.03328 6.05659 6.07381 6.47010 6.50520 6.56467 6.61089 6.99924 7.15305 7.31103 7.37594 7.81329 8.18639 8.86182 9.47503 10.99311 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.003499 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.446592 B = 8000.056818 C = 8597.187678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C 0.141 3.859 4 N -1.124 6.124 5 S 2.591 3.409 6 O -0.963 6.963 7 O -0.969 6.969 8 C -0.591 4.591 9 C 0.028 3.972 10 C -0.520 4.520 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.273 1.273 17 H -0.284 1.284 18 C -0.163 4.163 19 C -0.101 4.101 20 H 0.115 0.885 21 C -0.061 4.061 22 C -0.109 4.109 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.116 4.116 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.412 0.588 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 -21.636 -6.108 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C 0.015 3.985 4 N -0.882 5.882 5 S 2.689 3.311 6 O -0.953 6.953 7 O -0.960 6.960 8 C -0.724 4.724 9 C -0.011 4.011 10 C -0.559 4.559 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.198 1.198 17 H -0.210 1.210 18 C -0.200 4.200 19 C -0.120 4.120 20 H 0.133 0.867 21 C -0.061 4.061 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.134 4.134 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.245 0.755 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.376 -21.497 -5.731 22.674 hybrid contribution -1.166 0.980 -0.484 1.598 sum -5.542 -20.517 -6.214 22.143 Atomic orbital electron populations 1.21351 0.91249 1.02035 1.02539 1.21736 0.94972 0.90511 1.05074 1.20942 1.01376 0.93483 0.82716 1.55784 1.67939 1.51118 1.13335 1.05564 0.75046 0.75749 0.74773 1.93543 1.44133 1.82536 1.75074 1.93551 1.86733 1.86442 1.29229 1.30450 1.13092 1.16800 1.12069 1.18953 0.94420 0.88945 0.98737 1.21007 1.06658 0.91828 1.36452 0.92076 1.25067 0.94997 0.99153 0.95241 1.69957 1.16841 1.23881 1.42180 0.86475 0.79800 0.81834 0.79219 1.20463 1.19762 1.20995 1.23248 1.02905 1.00466 0.93378 1.21225 0.96004 1.00963 0.93758 0.86738 1.19099 0.93730 0.99766 0.93518 1.21144 0.92731 0.98305 1.00458 1.21216 0.98038 0.98403 0.94731 1.21188 0.98891 0.99742 0.94357 1.21094 0.93385 0.99863 0.99675 1.20880 0.97756 1.01125 0.93646 0.91798 0.92313 0.91557 0.91354 0.89147 0.75459 0.86187 0.86410 0.94831 0.94903 0.92546 0.87897 0.88164 0.85704 0.85696 0.86184 0.86244 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.12 -1.13 2.22 -154.51 -0.34 -1.47 16 3 C 0.14 1.67 5.74 -4.04 -0.02 1.64 16 4 N -1.12 -14.41 5.69 -10.61 -0.06 -14.47 16 5 S 2.59 45.93 5.46 -107.50 -0.59 45.34 16 6 O -0.96 -19.36 17.50 -57.54 -1.01 -20.37 16 7 O -0.97 -20.08 18.08 -57.54 -1.04 -21.12 16 8 C -0.59 -11.38 6.01 37.16 0.22 -11.16 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 14 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.16 -1.44 8.94 -26.73 -0.24 -1.68 16 19 C -0.10 -0.92 5.76 -91.77 -0.53 -1.45 16 20 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.06 -0.68 4.78 -104.62 -0.50 -1.18 16 22 C -0.11 -1.38 7.13 -39.58 -0.28 -1.66 16 23 C -0.11 -1.36 10.05 -39.58 -0.40 -1.76 16 24 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 25 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.19 9.74 -39.58 -0.39 -1.58 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 31 H 0.09 1.22 4.39 -51.93 -0.23 0.99 16 32 H 0.41 4.47 8.50 -34.47 -0.29 4.17 16 33 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 34 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.10 1.02 6.18 -51.93 -0.32 0.70 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.13 1.62 5.93 -52.49 -0.31 1.30 16 41 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -34.55 375.09 -11.39 -45.95 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.61 Total: 5.52 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: -3.46 Total: -36.90 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.68 Total: -40.32 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -2.05 Total: -41.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 45.93 SS G_CDS: -0.59 Total: 45.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.55 -11.39 -45.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.730 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds