Wall clock time and date at job start Tue Mar 31 2020 14:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.54907 * 2 1 4 4 N 1.46501 * 109.47206 * 90.99558 * 3 2 1 5 5 S 1.65600 * 119.99967 * 165.50706 * 4 3 2 6 6 O 1.42103 * 104.27981 * 308.93356 * 5 4 3 7 7 O 1.42095 * 104.27752 * 181.07160 * 5 4 3 8 8 C 1.81407 * 104.44901 * 65.00262 * 5 4 3 9 9 C 1.53004 * 109.47238 * 180.02562 * 8 5 4 10 10 C 1.50696 * 109.47007 * 179.97438 * 9 8 5 11 11 H 1.07998 * 119.99915 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99742 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99800 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99793 * 180.27547 * 12 10 9 15 15 H 1.48496 * 109.46771 * 269.72362 * 14 12 10 16 16 H 1.48498 * 109.46807 * 29.72754 * 14 12 10 17 17 H 1.48498 * 109.46779 * 149.72513 * 14 12 10 18 18 C 1.52997 * 117.50096 * 145.66668 * 2 1 3 19 19 C 1.52994 * 117.51997 * 214.29702 * 2 1 3 20 20 H 1.09000 * 117.50145 * 0.02562 * 19 2 1 21 21 C 1.50706 * 117.50132 * 145.02868 * 19 2 1 22 22 C 1.38237 * 119.99589 * 59.72337 * 21 19 2 23 23 C 1.38240 * 119.99399 * 179.76817 * 22 21 19 24 24 C 1.38232 * 120.00197 * 0.48536 * 23 22 21 25 25 C 1.38238 * 120.00044 * 359.79407 * 24 23 22 26 26 C 1.38228 * 119.99941 * 240.00467 * 21 19 2 27 27 H 1.08992 * 109.47113 * 66.47917 * 1 2 3 28 28 H 1.09000 * 109.47174 * 186.47719 * 1 2 3 29 29 H 1.08996 * 109.47299 * 306.47504 * 1 2 3 30 30 H 1.09004 * 109.47123 * 330.99713 * 3 2 1 31 31 H 1.09003 * 109.47151 * 210.99630 * 3 2 1 32 32 H 0.96998 * 120.00309 * 345.50929 * 4 3 2 33 33 H 1.08994 * 109.47040 * 60.00088 * 8 5 4 34 34 H 1.09004 * 109.46859 * 299.99961 * 8 5 4 35 35 H 1.09000 * 109.47382 * 59.99525 * 9 8 5 36 36 H 1.09000 * 109.46528 * 299.99918 * 9 8 5 37 37 H 0.96999 * 119.99417 * 180.02562 * 13 12 10 38 38 H 1.08998 * 117.50332 * 215.00463 * 18 2 1 39 39 H 1.09003 * 117.49956 * 0.02562 * 18 2 1 40 40 H 1.07996 * 120.00354 * 0.02562 * 22 21 19 41 41 H 1.08000 * 119.99733 * 180.25640 * 23 22 21 42 42 H 1.07995 * 119.99945 * 179.76343 * 24 23 22 43 43 H 1.07992 * 120.00038 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00607 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 2.4221 1.8106 1.3810 5 16 3.4345 3.0836 1.6925 6 8 4.6237 2.7677 0.9818 7 8 3.4347 3.1926 3.1093 8 6 2.6067 4.5139 0.9442 9 6 3.4546 5.7679 1.1668 10 6 2.7672 6.9559 0.5446 11 1 1.8201 6.8293 0.0412 12 6 3.3469 8.2048 0.6190 13 7 4.4995 8.3591 1.2334 14 14 2.4911 9.6787 -0.1455 15 1 2.9375 9.8350 -1.5531 16 1 1.0213 9.4697 -0.1125 17 1 2.8344 10.9031 0.6215 18 6 2.2364 -1.1206 0.7654 19 6 2.2369 -1.1209 -0.7646 20 1 1.6120 -1.8585 -1.2682 21 6 3.5299 -0.7809 -1.4601 22 6 4.6036 -0.3067 -0.7298 23 6 5.7911 0.0006 -1.3671 24 6 5.9018 -0.1567 -2.7360 25 6 4.8262 -0.6254 -3.4671 26 6 3.6403 -0.9377 -2.8290 27 1 -0.3633 0.4101 -0.9422 28 1 -0.3633 -1.0211 0.1159 29 1 -0.3634 0.6109 0.8263 30 1 1.5356 2.0959 -0.4983 31 1 3.1413 1.3283 -0.5292 32 1 1.9830 1.3499 2.1130 33 1 1.6285 4.6497 1.4053 34 1 2.4838 4.3439 -0.1255 35 1 4.4327 5.6318 0.7055 36 1 3.5778 5.9379 2.2364 37 1 4.9070 9.2378 1.2860 38 1 3.1713 -0.8746 1.2689 39 1 1.6112 -1.8582 1.2687 40 1 4.5159 -0.1803 0.3392 41 1 6.6313 0.3672 -0.7961 42 1 6.8283 0.0870 -3.2344 43 1 4.9125 -0.7480 -4.5365 44 1 2.8002 -1.3043 -3.4001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339012310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:08 Heat of formation + Delta-G solvation = -59.682623 kcal Electronic energy + Delta-G solvation = -25375.738812 eV Core-core repulsion = 21805.383306 eV Total energy + Delta-G solvation = -3570.355506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.04052 -38.72930 -38.11912 -36.99849 -35.90278 -35.18984 -33.13345 -31.97794 -31.76026 -29.10159 -27.59941 -26.97903 -24.71501 -23.60501 -23.29058 -21.46493 -20.41347 -20.12745 -19.06347 -18.32921 -17.88623 -17.18828 -16.99302 -16.53361 -16.36271 -16.10313 -15.78252 -15.41394 -15.11882 -14.97411 -14.48270 -14.23099 -14.12526 -13.93700 -13.73444 -13.60888 -13.36146 -13.22357 -13.15090 -13.03551 -12.93603 -12.79181 -12.63196 -12.27453 -12.16642 -12.12024 -11.85843 -11.80588 -11.70316 -11.34092 -11.15959 -10.79011 -10.65360 -10.34282 -9.72549 -9.37620 -8.26711 -6.40910 -0.67031 0.43335 0.54584 1.40275 1.42339 1.53473 1.83433 2.37547 2.67778 2.80437 3.06727 3.12321 3.29112 3.51915 3.80473 3.89998 3.95190 4.00581 4.09593 4.13486 4.17501 4.25463 4.35283 4.47592 4.62534 4.66211 4.74760 4.76498 4.85786 4.94794 5.01685 5.11961 5.15549 5.17240 5.21151 5.25620 5.26099 5.26886 5.45482 5.63097 5.67449 5.69811 5.75395 6.05348 6.16073 6.16566 6.72609 7.29344 8.85676 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.003499 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.446592 B = 8000.056818 C = 8597.187678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C 0.129 3.871 4 N -1.102 6.102 5 S 2.618 3.382 6 O -0.990 6.990 7 O -1.001 7.001 8 C -0.590 4.590 9 C 0.021 3.979 10 C -0.540 4.540 11 H 0.076 0.924 12 C -0.004 4.004 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.270 1.270 16 H -0.257 1.257 17 H -0.282 1.282 18 C -0.164 4.164 19 C -0.097 4.097 20 H 0.140 0.860 21 C -0.067 4.067 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.117 4.117 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.425 0.575 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.006 0.994 36 H 0.005 0.995 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.133 0.867 43 H 0.146 0.854 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 -22.870 -7.950 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.121 4.121 3 C 0.004 3.996 4 N -0.864 5.864 5 S 2.714 3.286 6 O -0.979 6.979 7 O -0.991 6.991 8 C -0.722 4.722 9 C -0.018 4.018 10 C -0.579 4.579 11 H 0.094 0.906 12 C -0.202 4.202 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.181 1.181 17 H -0.208 1.208 18 C -0.201 4.201 19 C -0.115 4.115 20 H 0.158 0.842 21 C -0.067 4.067 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.135 4.135 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.261 0.739 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.164 0.836 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.434 -22.735 -7.566 25.087 hybrid contribution -0.179 1.274 0.077 1.289 sum -7.613 -21.460 -7.490 23.971 Atomic orbital electron populations 1.21371 0.89341 1.03290 1.02861 1.21703 0.96041 0.88830 1.05516 1.21172 1.01254 0.95810 0.81379 1.55246 1.67246 1.49157 1.14709 1.04488 0.74823 0.75813 0.73440 1.93514 1.46045 1.82944 1.75441 1.93501 1.87295 1.87115 1.31173 1.30356 1.13060 1.14773 1.14035 1.18807 0.94412 0.91950 0.96601 1.21517 1.07261 0.92722 1.36365 0.90634 1.26128 0.95641 1.02760 0.95672 1.70107 1.18693 1.24800 1.43799 0.85307 0.79228 0.77397 0.78305 1.19548 1.18095 1.20794 1.23319 1.02539 1.00790 0.93490 1.21339 0.95205 1.01150 0.93853 0.84197 1.19350 0.94042 0.99165 0.94128 1.21175 0.93578 0.99583 1.00178 1.21329 0.98216 0.99931 0.95819 1.21417 1.00154 0.99926 0.93815 1.21459 0.92969 0.98808 1.00994 1.21257 0.98555 1.00228 0.93453 0.91292 0.90543 0.91540 0.89878 0.90907 0.73863 0.83979 0.84340 0.97599 0.97646 0.92388 0.89606 0.85898 0.86934 0.86889 0.84892 0.83638 0.83476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.67 71.98 0.70 -0.57 16 2 C -0.12 -1.91 2.22 -52.19 -0.12 -2.02 16 3 C 0.13 2.86 5.74 86.38 0.50 3.36 16 4 N -1.10 -27.24 5.69 -187.48 -1.07 -28.31 16 5 S 2.62 94.38 5.46 -56.49 -0.31 94.07 16 6 O -0.99 -41.44 17.50 -127.65 -2.23 -43.67 16 7 O -1.00 -42.38 18.08 -127.65 -2.31 -44.68 16 8 C -0.59 -22.68 6.01 71.98 0.43 -22.25 16 9 C 0.02 1.12 4.98 29.85 0.15 1.27 16 10 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 11 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 12 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 13 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 14 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 C -0.16 -2.56 8.94 30.59 0.27 -2.29 16 19 C -0.10 -1.51 5.76 -11.54 -0.07 -1.57 16 20 H 0.14 1.49 8.14 -2.39 -0.02 1.48 16 21 C -0.07 -1.40 4.78 -19.87 -0.09 -1.49 16 22 C -0.13 -3.33 7.13 22.27 0.16 -3.17 16 23 C -0.13 -3.66 10.05 22.27 0.22 -3.43 16 24 C -0.14 -3.07 10.05 22.27 0.22 -2.84 16 25 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 26 C -0.12 -2.14 9.74 22.27 0.22 -1.92 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.61 8.04 -2.38 -0.02 1.59 16 31 H 0.07 1.94 4.39 -2.39 -0.01 1.92 16 32 H 0.42 8.61 8.50 -96.75 -0.82 7.79 16 33 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 34 H 0.14 4.68 8.14 -2.39 -0.02 4.66 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.09 1.66 6.18 -2.39 -0.01 1.65 16 39 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 3.10 5.93 -2.91 -0.02 3.08 16 41 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -77.05 375.09 0.08 -76.97 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.17 Total: 26.01 kcal Atomic # 6 Polarization: -72.31 SS G_CDS: 3.51 Total: -68.80 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -0.78 Total: -85.38 kcal Atomic # 8 Polarization: -83.82 SS G_CDS: -4.54 Total: -88.36 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 94.38 SS G_CDS: -0.31 Total: 94.07 kcal Total: -77.05 0.08 -76.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.283 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds