Wall clock time and date at job start Tue Mar 31 2020 14:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 115.54950 * 2 1 4 4 N 1.46502 * 109.47156 * 295.29816 * 3 2 1 5 5 S 1.65598 * 119.99574 * 165.49639 * 4 3 2 6 6 O 1.42098 * 104.27625 * 181.07323 * 5 4 3 7 7 O 1.42103 * 104.28107 * 308.92835 * 5 4 3 8 8 C 1.81399 * 104.45016 * 65.00291 * 5 4 3 9 9 C 1.53003 * 109.46948 * 179.97438 * 8 5 4 10 10 C 1.50700 * 109.46823 * 179.97438 * 9 8 5 11 11 H 1.08001 * 120.00369 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00270 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00057 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47197 * 89.99743 * 14 12 10 16 16 H 1.48496 * 109.47182 * 210.00197 * 14 12 10 17 17 H 1.48504 * 109.46902 * 329.99875 * 14 12 10 18 18 C 1.52993 * 117.50010 * 145.67719 * 2 1 3 19 19 C 1.52991 * 60.00237 * 107.48675 * 18 2 1 20 20 H 1.09002 * 117.50200 * 107.49006 * 19 18 2 21 21 C 1.50706 * 117.50138 * 252.50904 * 19 18 2 22 22 C 1.38239 * 119.99414 * 8.35007 * 21 19 18 23 23 C 1.38234 * 119.99858 * 179.79025 * 22 21 19 24 24 C 1.38241 * 119.99812 * 0.45666 * 23 22 21 25 25 C 1.38236 * 119.99726 * 359.77468 * 24 23 22 26 26 C 1.38230 * 120.00474 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.46827 * 280.85240 * 1 2 3 28 28 H 1.09002 * 109.47062 * 160.85522 * 1 2 3 29 29 H 1.08991 * 109.46959 * 40.85327 * 1 2 3 30 30 H 1.09004 * 109.46736 * 55.29865 * 3 2 1 31 31 H 1.09005 * 109.47063 * 175.29796 * 3 2 1 32 32 H 0.97000 * 120.00169 * 345.49784 * 4 3 2 33 33 H 1.09003 * 109.47070 * 299.99306 * 8 5 4 34 34 H 1.08995 * 109.47516 * 59.99846 * 8 5 4 35 35 H 1.08998 * 109.47107 * 299.99325 * 9 8 5 36 36 H 1.08997 * 109.47437 * 60.00060 * 9 8 5 37 37 H 0.96997 * 120.00178 * 180.02562 * 13 12 10 38 38 H 1.09001 * 117.49958 * 214.97664 * 18 2 1 39 39 H 1.09000 * 117.50436 * 359.97053 * 18 2 1 40 40 H 1.07998 * 119.99905 * 359.97438 * 22 21 19 41 41 H 1.08002 * 120.00261 * 180.25394 * 23 22 21 42 42 H 1.07993 * 120.00080 * 179.78778 * 24 23 22 43 43 H 1.08001 * 119.99780 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.00305 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8680 2.0756 -1.2488 5 16 2.1362 3.7042 -1.3825 6 8 1.6911 4.0262 -2.6930 7 8 1.5038 4.2588 -0.2372 8 6 3.9378 3.8778 -1.2616 9 6 4.3163 5.3560 -1.3733 10 6 5.8130 5.5002 -1.2723 11 1 6.4323 4.6252 -1.1410 12 6 6.3918 6.7494 -1.3473 13 7 5.6379 7.8149 -1.5077 14 14 8.2471 6.9282 -1.2228 15 1 8.8449 6.8428 -2.5795 16 1 8.5782 8.2433 -0.6178 17 1 8.7932 5.8405 -0.3719 18 6 2.2365 -1.1208 0.7652 19 6 2.2365 -1.1212 -0.7647 20 1 3.1715 -0.8755 -1.2682 21 6 1.3720 -2.1410 -1.4603 22 6 0.4893 -2.9132 -0.7285 23 6 -0.3068 -3.8456 -1.3670 24 6 -0.2134 -4.0125 -2.7362 25 6 0.6728 -3.2436 -3.4672 26 6 1.4659 -2.3083 -2.8293 27 1 -0.3633 0.1935 1.0093 28 1 -0.3633 -0.9708 -0.3370 29 1 -0.3633 0.7773 -0.6722 30 1 1.8187 1.9605 0.8449 31 1 3.2707 1.2665 0.0842 32 1 1.4978 1.5819 -1.9972 33 1 4.2769 3.4871 -0.3021 34 1 4.4116 3.3197 -2.0691 35 1 3.9774 5.7463 -2.3329 36 1 3.8426 5.9145 -0.5661 37 1 6.0451 8.6937 -1.5609 38 1 3.1716 -0.8748 1.2684 39 1 1.6114 -1.8579 1.2691 40 1 0.4195 -2.7859 0.3416 41 1 -0.9994 -4.4461 -0.7959 42 1 -0.8328 -4.7433 -3.2346 43 1 0.7461 -3.3743 -4.5368 44 1 2.1585 -1.7079 -3.4004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339012312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:11 Heat of formation + Delta-G solvation = -37.645632 kcal Electronic energy + Delta-G solvation = -24667.985032 eV Core-core repulsion = 21098.585121 eV Total energy + Delta-G solvation = -3569.399911 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35978 -38.09453 -36.55378 -35.42740 -34.34579 -33.89260 -31.30267 -31.16215 -30.89274 -28.69019 -26.03090 -25.59816 -24.08344 -22.67931 -21.67618 -20.93049 -19.43293 -18.85714 -17.41256 -17.17016 -16.66838 -16.15074 -15.62337 -15.48028 -15.22832 -14.75736 -14.57898 -14.53380 -14.25380 -13.68342 -13.59314 -13.39553 -13.21548 -12.89666 -12.51520 -12.32835 -12.25367 -11.92731 -11.74247 -11.62028 -11.56201 -11.48785 -11.24140 -11.08971 -11.02707 -10.95918 -10.59044 -10.41523 -10.38249 -10.13755 -9.79553 -9.48239 -9.15026 -9.01598 -8.74808 -8.50722 -6.12774 -4.18382 0.80595 1.04679 1.13107 3.06679 3.25605 3.31856 3.34286 3.36137 3.77886 4.17139 4.26019 4.37675 4.47322 4.52789 4.62550 4.71448 4.75138 4.77658 4.83065 4.92333 5.20623 5.22391 5.26907 5.33283 5.42457 5.52042 5.58186 5.66061 5.68367 5.70999 5.74375 5.78668 5.82780 5.87194 6.03432 6.10930 6.21549 6.25796 6.37734 6.48754 6.72976 7.12837 7.30167 7.36504 7.80101 8.17253 8.85028 9.46361 10.98272 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.002617 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.218720 B =10698.312086 C =11014.227253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 C 0.153 3.847 4 N -1.125 6.125 5 S 2.593 3.407 6 O -0.968 6.968 7 O -0.967 6.967 8 C -0.590 4.590 9 C 0.028 3.972 10 C -0.520 4.520 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.159 4.159 19 C -0.113 4.113 20 H 0.117 0.883 21 C -0.045 4.045 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.117 4.117 26 C -0.113 4.113 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.413 0.587 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -24.516 1.846 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.117 4.117 3 C 0.026 3.974 4 N -0.882 5.882 5 S 2.691 3.309 6 O -0.958 6.958 7 O -0.957 6.957 8 C -0.723 4.723 9 C -0.011 4.011 10 C -0.560 4.560 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.197 4.197 19 C -0.131 4.131 20 H 0.135 0.865 21 C -0.045 4.045 22 C -0.138 4.138 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.135 4.135 26 C -0.131 4.131 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.246 0.754 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.616 -23.562 1.888 25.912 hybrid contribution 1.528 -0.392 -0.257 1.598 sum -9.088 -23.954 1.631 25.672 Atomic orbital electron populations 1.21509 0.91527 1.03052 1.02449 1.21705 0.95591 0.89996 1.04387 1.20781 0.98639 0.91171 0.86800 1.55746 1.81238 1.29269 1.21930 1.05521 0.79164 0.72168 0.74071 1.93553 1.80909 1.81808 1.39546 1.93539 1.73719 1.76277 1.52149 1.30447 1.21280 1.10556 1.10036 1.18961 0.99143 0.84212 0.98818 1.21000 0.90699 0.93000 1.51261 0.92072 1.25073 0.98671 0.95840 0.94931 1.69953 1.35426 0.98502 1.48953 0.86471 0.84874 0.77606 0.78330 1.20474 1.21002 1.19779 1.23238 1.02783 1.00466 0.93215 1.21316 1.00087 0.97840 0.93839 0.86464 1.19117 0.96251 0.95683 0.93421 1.21068 0.96498 0.96157 1.00036 1.21122 0.99425 0.98453 0.94812 1.21145 0.99130 0.99920 0.94332 1.21154 0.96280 0.96158 0.99940 1.21029 0.99746 0.98450 0.93880 0.91864 0.91281 0.91634 0.89508 0.91525 0.75384 0.86368 0.86136 0.94847 0.94818 0.92521 0.87801 0.88070 0.85838 0.86195 0.86285 0.86047 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.48 37.16 0.35 -0.85 16 2 C -0.12 -1.05 2.15 -154.51 -0.33 -1.38 16 3 C 0.15 1.66 5.97 -4.04 -0.02 1.63 16 4 N -1.12 -14.29 5.55 -10.61 -0.06 -14.35 16 5 S 2.59 45.73 5.46 -107.50 -0.59 45.15 16 6 O -0.97 -20.08 18.08 -57.54 -1.04 -21.13 16 7 O -0.97 -19.90 17.50 -57.54 -1.01 -20.91 16 8 C -0.59 -11.07 6.01 37.16 0.22 -10.84 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 14 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C -0.16 -1.20 9.28 -26.74 -0.25 -1.45 16 19 C -0.11 -0.96 5.76 -91.77 -0.53 -1.49 16 20 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.04 -0.40 4.90 -104.62 -0.51 -0.91 16 22 C -0.12 -0.97 7.06 -39.58 -0.28 -1.25 16 23 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 24 C -0.13 -0.98 10.05 -39.58 -0.40 -1.37 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 26 C -0.11 -1.00 9.74 -39.59 -0.39 -1.39 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.60 4.61 -51.93 -0.24 0.36 16 29 H 0.06 0.68 7.83 -51.93 -0.41 0.28 16 30 H 0.09 1.00 7.70 -51.93 -0.40 0.60 16 31 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.41 4.65 8.61 -34.47 -0.30 4.36 16 33 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 34 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.66 6.17 -51.93 -0.32 0.34 16 40 H 0.12 0.85 5.83 -52.49 -0.31 0.54 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -35.03 374.91 -11.39 -46.42 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.58 Total: 3.31 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: -3.48 Total: -34.52 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.68 Total: -40.09 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -2.05 Total: -42.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 45.73 SS G_CDS: -0.59 Total: 45.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.03 -11.39 -46.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.771 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds