Wall clock time and date at job start Tue Mar 31 2020 14:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 115.54950 * 2 1 4 4 N 1.46502 * 109.47156 * 295.29816 * 3 2 1 5 5 S 1.65598 * 119.99574 * 165.49639 * 4 3 2 6 6 O 1.42098 * 104.27625 * 181.07323 * 5 4 3 7 7 O 1.42103 * 104.28107 * 308.92835 * 5 4 3 8 8 C 1.81399 * 104.45016 * 65.00291 * 5 4 3 9 9 C 1.53003 * 109.46948 * 179.97438 * 8 5 4 10 10 C 1.50700 * 109.46823 * 179.97438 * 9 8 5 11 11 H 1.08001 * 120.00369 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00270 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00057 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47197 * 89.99743 * 14 12 10 16 16 H 1.48496 * 109.47182 * 210.00197 * 14 12 10 17 17 H 1.48504 * 109.46902 * 329.99875 * 14 12 10 18 18 C 1.52993 * 117.50010 * 145.67719 * 2 1 3 19 19 C 1.52991 * 60.00237 * 107.48675 * 18 2 1 20 20 H 1.09002 * 117.50200 * 107.49006 * 19 18 2 21 21 C 1.50706 * 117.50138 * 252.50904 * 19 18 2 22 22 C 1.38239 * 119.99414 * 8.35007 * 21 19 18 23 23 C 1.38234 * 119.99858 * 179.79025 * 22 21 19 24 24 C 1.38241 * 119.99812 * 0.45666 * 23 22 21 25 25 C 1.38236 * 119.99726 * 359.77468 * 24 23 22 26 26 C 1.38230 * 120.00474 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.46827 * 280.85240 * 1 2 3 28 28 H 1.09002 * 109.47062 * 160.85522 * 1 2 3 29 29 H 1.08991 * 109.46959 * 40.85327 * 1 2 3 30 30 H 1.09004 * 109.46736 * 55.29865 * 3 2 1 31 31 H 1.09005 * 109.47063 * 175.29796 * 3 2 1 32 32 H 0.97000 * 120.00169 * 345.49784 * 4 3 2 33 33 H 1.09003 * 109.47070 * 299.99306 * 8 5 4 34 34 H 1.08995 * 109.47516 * 59.99846 * 8 5 4 35 35 H 1.08998 * 109.47107 * 299.99325 * 9 8 5 36 36 H 1.08997 * 109.47437 * 60.00060 * 9 8 5 37 37 H 0.96997 * 120.00178 * 180.02562 * 13 12 10 38 38 H 1.09001 * 117.49958 * 214.97664 * 18 2 1 39 39 H 1.09000 * 117.50436 * 359.97053 * 18 2 1 40 40 H 1.07998 * 119.99905 * 359.97438 * 22 21 19 41 41 H 1.08002 * 120.00261 * 180.25394 * 23 22 21 42 42 H 1.07993 * 120.00080 * 179.78778 * 24 23 22 43 43 H 1.08001 * 119.99780 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.00305 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8680 2.0756 -1.2488 5 16 2.1362 3.7042 -1.3825 6 8 1.6911 4.0262 -2.6930 7 8 1.5038 4.2588 -0.2372 8 6 3.9378 3.8778 -1.2616 9 6 4.3163 5.3560 -1.3733 10 6 5.8130 5.5002 -1.2723 11 1 6.4323 4.6252 -1.1410 12 6 6.3918 6.7494 -1.3473 13 7 5.6379 7.8149 -1.5077 14 14 8.2471 6.9282 -1.2228 15 1 8.8449 6.8428 -2.5795 16 1 8.5782 8.2433 -0.6178 17 1 8.7932 5.8405 -0.3719 18 6 2.2365 -1.1208 0.7652 19 6 2.2365 -1.1212 -0.7647 20 1 3.1715 -0.8755 -1.2682 21 6 1.3720 -2.1410 -1.4603 22 6 0.4893 -2.9132 -0.7285 23 6 -0.3068 -3.8456 -1.3670 24 6 -0.2134 -4.0125 -2.7362 25 6 0.6728 -3.2436 -3.4672 26 6 1.4659 -2.3083 -2.8293 27 1 -0.3633 0.1935 1.0093 28 1 -0.3633 -0.9708 -0.3370 29 1 -0.3633 0.7773 -0.6722 30 1 1.8187 1.9605 0.8449 31 1 3.2707 1.2665 0.0842 32 1 1.4978 1.5819 -1.9972 33 1 4.2769 3.4871 -0.3021 34 1 4.4116 3.3197 -2.0691 35 1 3.9774 5.7463 -2.3329 36 1 3.8426 5.9145 -0.5661 37 1 6.0451 8.6937 -1.5609 38 1 3.1716 -0.8748 1.2684 39 1 1.6114 -1.8579 1.2691 40 1 0.4195 -2.7859 0.3416 41 1 -0.9994 -4.4461 -0.7959 42 1 -0.8328 -4.7433 -3.2346 43 1 0.7461 -3.3743 -4.5368 44 1 2.1585 -1.7079 -3.4004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339012312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:11 Heat of formation + Delta-G solvation = -60.298062 kcal Electronic energy + Delta-G solvation = -24668.967315 eV Core-core repulsion = 21098.585121 eV Total energy + Delta-G solvation = -3570.382194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98322 -38.76438 -38.11743 -37.00149 -35.88554 -35.33308 -33.11596 -31.88720 -31.51917 -29.38286 -27.58047 -26.92814 -24.66858 -23.58457 -23.27167 -21.55857 -20.28524 -20.13199 -19.05235 -18.21320 -17.75389 -17.44475 -17.04235 -16.53275 -16.35456 -16.10604 -15.76834 -15.30865 -15.12068 -14.89144 -14.51177 -14.39554 -14.16802 -14.03868 -13.71043 -13.58379 -13.20834 -13.18584 -13.08625 -12.95456 -12.92561 -12.83451 -12.76155 -12.31020 -12.22985 -12.12719 -11.81451 -11.74180 -11.71573 -11.28682 -11.12055 -10.82128 -10.64306 -10.32162 -9.73936 -9.35981 -8.25515 -6.39477 -0.66182 0.45283 0.54263 1.41300 1.43083 1.54135 1.85564 2.38371 2.68652 2.83165 3.08018 3.12779 3.29803 3.53156 3.77848 3.92237 3.95843 4.04870 4.07142 4.16628 4.19180 4.24609 4.34352 4.49434 4.64943 4.67403 4.76972 4.77157 4.81086 4.93841 5.02343 5.10340 5.11266 5.16961 5.22587 5.26299 5.28534 5.29697 5.39056 5.64018 5.68281 5.69097 5.77481 6.06640 6.13007 6.16665 6.74523 7.30729 8.86812 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.002617 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.218720 B =10698.312086 C =11014.227253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.124 4.124 3 C 0.141 3.859 4 N -1.105 6.105 5 S 2.621 3.379 6 O -1.002 7.002 7 O -0.998 6.998 8 C -0.586 4.586 9 C 0.019 3.981 10 C -0.537 4.537 11 H 0.077 0.923 12 C -0.005 4.005 13 N -0.935 5.935 14 Si 0.974 3.026 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.256 1.256 18 C -0.144 4.144 19 C -0.114 4.114 20 H 0.119 0.881 21 C -0.057 4.057 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.131 4.131 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.422 0.578 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.005 0.995 36 H 0.007 0.993 37 H 0.267 0.733 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.906 -27.110 2.591 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 C 0.016 3.984 4 N -0.866 5.866 5 S 2.717 3.283 6 O -0.992 6.992 7 O -0.988 6.988 8 C -0.719 4.719 9 C -0.020 4.020 10 C -0.576 4.576 11 H 0.095 0.905 12 C -0.204 4.204 13 N -0.575 5.575 14 Si 0.798 3.202 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.180 1.180 18 C -0.182 4.182 19 C -0.132 4.132 20 H 0.137 0.863 21 C -0.057 4.057 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.147 4.147 26 C -0.149 4.149 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.258 0.742 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.023 0.977 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.546 -26.172 2.628 27.982 hybrid contribution 1.112 0.322 -0.488 1.256 sum -8.434 -25.850 2.140 27.276 Atomic orbital electron populations 1.21509 0.91936 1.02819 1.02338 1.21575 0.95291 0.89351 1.06312 1.21082 1.00274 0.91832 0.85235 1.55241 1.80790 1.27352 1.23254 1.04413 0.78215 0.73066 0.72564 1.93499 1.81308 1.83237 1.41189 1.93497 1.74182 1.77891 1.53197 1.30326 1.22749 1.06293 1.12505 1.18826 0.98518 0.88342 0.96281 1.21525 0.91923 0.93679 1.50516 0.90485 1.26132 1.04190 0.95558 0.94480 1.70104 1.37851 0.99160 1.50360 0.85310 0.78287 0.77889 0.78755 1.19690 1.20925 1.18016 1.23363 1.03006 0.99114 0.92676 1.21341 0.99894 0.97286 0.94651 0.86279 1.19243 0.96757 0.96142 0.93559 1.21264 0.96367 0.96128 1.00702 1.21426 0.99538 0.98446 0.95080 1.21441 0.99122 1.00107 0.94640 1.21400 0.96334 0.96143 1.00791 1.21217 1.00339 0.99056 0.94276 0.91428 0.90644 0.93278 0.90180 0.89311 0.74174 0.83737 0.83865 0.97693 0.97478 0.92425 0.86611 0.86877 0.84668 0.84345 0.84561 0.84867 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.48 71.98 0.68 -1.56 16 2 C -0.12 -2.00 2.15 -52.18 -0.11 -2.12 16 3 C 0.14 2.79 5.97 86.38 0.52 3.31 16 4 N -1.11 -26.76 5.55 -187.47 -1.04 -27.80 16 5 S 2.62 92.37 5.46 -56.49 -0.31 92.06 16 6 O -1.00 -42.22 18.08 -127.65 -2.31 -44.53 16 7 O -1.00 -41.55 17.50 -127.65 -2.23 -43.79 16 8 C -0.59 -21.53 6.01 71.98 0.43 -21.09 16 9 C 0.02 1.00 4.98 29.85 0.15 1.15 16 10 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 11 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 12 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 13 N -0.94 -56.99 13.29 21.45 0.28 -56.71 16 14 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 18 C -0.14 -1.75 9.28 30.59 0.28 -1.47 16 19 C -0.11 -1.69 5.76 -11.54 -0.07 -1.76 16 20 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.06 -0.92 4.90 -19.86 -0.10 -1.02 16 22 C -0.13 -1.81 7.06 22.27 0.16 -1.66 16 23 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 24 C -0.14 -1.85 10.05 22.27 0.22 -1.63 16 25 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 26 C -0.13 -2.19 9.74 22.27 0.22 -1.97 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.07 1.20 4.61 -2.39 -0.01 1.19 16 29 H 0.05 0.99 7.83 -2.39 -0.02 0.98 16 30 H 0.08 1.73 7.70 -2.38 -0.02 1.71 16 31 H 0.09 1.38 8.10 -2.38 -0.02 1.36 16 32 H 0.42 9.04 8.61 -96.75 -0.83 8.21 16 33 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 34 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 35 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.12 6.17 -2.39 -0.01 1.10 16 40 H 0.14 1.52 5.83 -2.91 -0.02 1.50 16 41 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -76.58 374.91 0.11 -76.46 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.17 Total: 21.36 kcal Atomic # 6 Polarization: -65.67 SS G_CDS: 3.53 Total: -62.14 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -0.76 Total: -84.51 kcal Atomic # 8 Polarization: -83.78 SS G_CDS: -4.54 Total: -88.32 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 92.37 SS G_CDS: -0.31 Total: 92.06 kcal Total: -76.58 0.11 -76.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.163 kcal (2) G-P(sol) polarization free energy of solvation -76.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds