Wall clock time and date at job start Tue Mar 31 2020 14:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.56089 * 2 1 4 4 N 1.46499 * 109.47375 * 325.69498 * 3 2 1 5 5 S 1.65599 * 120.00159 * 164.99958 * 4 3 2 6 6 O 1.42098 * 104.27621 * 181.06972 * 5 4 3 7 7 O 1.42104 * 104.27792 * 308.92504 * 5 4 3 8 8 C 1.81397 * 104.45206 * 64.99654 * 5 4 3 9 9 C 1.52996 * 109.47305 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46870 * 179.97438 * 9 8 5 11 11 H 1.08001 * 120.00344 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99478 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99679 * 180.02562 * 12 10 9 14 14 Si 1.86791 * 120.00373 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47203 * 89.99765 * 14 12 10 16 16 H 1.48504 * 109.47113 * 209.99815 * 14 12 10 17 17 H 1.48499 * 109.47159 * 329.99683 * 14 12 10 18 18 C 1.52997 * 117.49537 * 214.31748 * 2 1 3 19 19 C 1.53000 * 117.49776 * 145.69294 * 2 1 3 20 20 H 1.09004 * 117.49237 * 214.97568 * 19 2 1 21 21 C 1.50696 * 117.50175 * 359.97438 * 19 2 1 22 22 C 1.38237 * 119.99839 * 59.73685 * 21 19 2 23 23 C 1.38240 * 119.99721 * 179.81094 * 22 21 19 24 24 C 1.38241 * 119.99694 * 0.42245 * 23 22 21 25 25 C 1.38227 * 120.00098 * 359.81137 * 24 23 22 26 26 C 1.38231 * 120.00408 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46919 * 274.30794 * 1 2 3 28 28 H 1.09000 * 109.47139 * 34.30150 * 1 2 3 29 29 H 1.08994 * 109.47047 * 154.31069 * 1 2 3 30 30 H 1.09004 * 109.46610 * 85.68977 * 3 2 1 31 31 H 1.08996 * 109.47111 * 205.68891 * 3 2 1 32 32 H 0.97003 * 120.00060 * 344.99878 * 4 3 2 33 33 H 1.09001 * 109.47080 * 300.00278 * 8 5 4 34 34 H 1.09005 * 109.46791 * 59.99817 * 8 5 4 35 35 H 1.08993 * 109.47267 * 300.00085 * 9 8 5 36 36 H 1.09003 * 109.46770 * 60.00694 * 9 8 5 37 37 H 0.97002 * 119.99920 * 179.97438 * 13 12 10 38 38 H 1.08999 * 117.49685 * 145.02116 * 18 2 1 39 39 H 1.08999 * 117.52022 * 359.97438 * 18 2 1 40 40 H 1.07995 * 119.99965 * 0.02562 * 22 21 19 41 41 H 1.08002 * 119.99767 * 180.20959 * 23 22 21 42 42 H 1.08004 * 119.99343 * 179.79321 * 24 23 22 43 43 H 1.08004 * 119.99943 * 179.97438 * 25 24 23 44 44 H 1.07994 * 120.00414 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 7 1.3717 2.3131 -0.7784 5 16 1.6279 3.9442 -0.6515 6 8 0.6538 4.5199 -1.5111 7 8 1.6099 4.1941 0.7473 8 6 3.2951 4.1940 -1.3212 9 6 3.6525 5.6804 -1.2587 10 6 5.0378 5.8877 -1.8145 11 1 5.6064 5.0438 -2.1766 12 6 5.5795 7.1548 -1.8608 13 7 6.7883 7.3358 -2.3464 14 14 4.5965 8.6142 -1.2340 15 1 4.8769 8.8164 0.2101 16 1 4.9840 9.8330 -1.9889 17 1 3.1471 8.3536 -1.4251 18 6 2.2364 -1.1209 -0.7651 19 6 2.2365 -1.1210 0.7649 20 1 3.1716 -0.8752 1.2682 21 6 1.3721 -2.1404 1.4612 22 6 0.4810 -2.9049 0.7315 23 6 -0.3091 -3.8427 1.3697 24 6 -0.2143 -4.0098 2.7387 25 6 0.6733 -3.2419 3.4689 26 6 1.4658 -2.3065 2.8303 27 1 -0.3633 0.0772 1.0248 28 1 -0.3633 0.8489 -0.5791 29 1 -0.3633 -0.9260 -0.4455 30 1 2.2773 1.7413 1.0248 31 1 3.1824 1.3085 -0.4455 32 1 0.6796 1.9754 -1.3682 33 1 4.0126 3.6224 -0.7325 34 1 3.3247 3.8568 -2.3574 35 1 2.9351 6.2516 -1.8477 36 1 3.6229 6.0178 -0.2227 37 1 7.1692 8.2273 -2.3793 38 1 3.1715 -0.8750 -1.2684 39 1 1.6115 -1.8587 -1.2683 40 1 0.4047 -2.7720 -0.3375 41 1 -1.0028 -4.4424 0.7992 42 1 -0.8340 -4.7402 3.2377 43 1 0.7470 -3.3721 4.5385 44 1 2.1589 -1.7062 3.4009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339012313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:14 Heat of formation + Delta-G solvation = -29.673047 kcal Electronic energy + Delta-G solvation = -24524.365000 eV Core-core repulsion = 20955.310806 eV Total energy + Delta-G solvation = -3569.054194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33963 -38.16888 -36.70094 -35.57947 -34.55797 -33.95642 -31.49028 -31.29454 -30.85986 -28.65648 -26.23388 -25.96995 -24.13935 -22.69872 -21.31955 -20.88117 -19.47961 -19.03067 -17.66441 -17.22178 -16.99365 -16.32413 -15.61921 -15.49503 -15.25046 -14.87646 -14.61854 -14.34370 -14.26694 -13.88428 -13.67356 -13.55095 -13.28485 -12.88442 -12.80962 -12.55620 -12.22947 -11.91884 -11.82416 -11.73120 -11.64291 -11.62737 -11.26446 -11.26169 -11.19552 -11.08363 -10.67010 -10.46234 -10.25340 -10.10617 -9.76520 -9.48978 -9.19496 -9.16920 -8.77392 -8.66919 -6.17316 -4.18564 0.65923 1.02957 1.11790 2.98093 3.26228 3.28369 3.33650 3.37929 3.72834 4.08898 4.20012 4.35343 4.44502 4.45793 4.57602 4.66526 4.68648 4.71899 4.80925 4.89722 5.14468 5.18072 5.19909 5.30023 5.36082 5.45977 5.51526 5.54398 5.57041 5.66271 5.68326 5.73660 5.80051 5.81559 5.93599 6.04436 6.19928 6.23360 6.27584 6.35653 6.71133 6.81104 6.92103 7.04011 7.54158 8.35695 8.83672 9.42396 10.95029 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002462 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.397436 B =11372.280867 C =11647.415197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.116 4.116 3 C 0.152 3.848 4 N -1.123 6.123 5 S 2.591 3.409 6 O -0.967 6.967 7 O -0.966 6.966 8 C -0.583 4.583 9 C -0.007 4.007 10 C -0.519 4.519 11 H 0.078 0.922 12 C 0.071 3.929 13 N -0.896 5.896 14 Si 0.870 3.130 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.262 1.262 18 C -0.164 4.164 19 C -0.109 4.109 20 H 0.118 0.882 21 C -0.044 4.044 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.113 4.113 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.266 0.734 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 -23.636 7.105 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.117 4.117 3 C 0.025 3.975 4 N -0.882 5.882 5 S 2.688 3.312 6 O -0.957 6.957 7 O -0.956 6.956 8 C -0.716 4.716 9 C -0.047 4.047 10 C -0.558 4.558 11 H 0.096 0.904 12 C -0.132 4.132 13 N -0.534 5.534 14 Si 0.696 3.304 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.186 1.186 18 C -0.201 4.201 19 C -0.128 4.128 20 H 0.136 0.864 21 C -0.044 4.044 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.131 4.131 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.250 0.750 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.098 -22.811 7.556 27.368 hybrid contribution 0.019 0.302 -0.229 0.379 sum -13.079 -22.509 7.327 27.045 Atomic orbital electron populations 1.21399 0.91506 1.02048 1.02632 1.21685 0.95576 0.90038 1.04438 1.20805 0.92931 0.87179 0.96551 1.55801 1.48650 1.25483 1.58287 1.05564 0.78302 0.72299 0.75059 1.93561 1.58057 1.75468 1.68657 1.93549 1.87474 1.83291 1.31274 1.30297 1.19803 1.09043 1.12472 1.19410 1.00175 0.86896 0.98195 1.20847 0.97746 0.95159 1.42067 0.90433 1.24995 0.94824 0.98873 0.94490 1.69884 1.15139 1.22894 1.45439 0.86915 0.81423 0.82426 0.79629 1.19669 1.20766 1.18611 1.23433 1.02890 1.00734 0.93040 1.21258 0.99960 0.97613 0.93989 0.86421 1.19095 0.96192 0.95743 0.93393 1.21098 0.96337 0.96208 1.00017 1.21125 0.99426 0.98382 0.94800 1.21143 0.99112 0.99946 0.94340 1.21140 0.96363 0.96216 0.99895 1.21016 0.99796 0.98433 0.93852 0.91819 0.91517 0.92000 0.89655 0.91162 0.75047 0.85779 0.85480 0.94923 0.95361 0.92383 0.87780 0.88232 0.85889 0.86204 0.86297 0.86093 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.44 37.16 0.31 -0.74 16 2 C -0.12 -1.03 2.52 -154.51 -0.39 -1.41 16 3 C 0.15 1.58 6.27 -4.04 -0.03 1.56 16 4 N -1.12 -13.38 5.38 -10.61 -0.06 -13.44 16 5 S 2.59 42.76 5.46 -107.50 -0.59 42.18 16 6 O -0.97 -18.72 18.08 -57.54 -1.04 -19.76 16 7 O -0.97 -18.63 17.50 -57.54 -1.01 -19.64 16 8 C -0.58 -10.38 6.01 37.16 0.22 -10.16 16 9 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 10 C -0.52 -14.40 9.66 -34.44 -0.33 -14.74 16 11 H 0.08 2.25 7.99 -52.49 -0.42 1.84 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 14 Si 0.87 21.45 27.47 -169.99 -4.67 16.79 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 18 C -0.16 -1.24 9.16 -26.73 -0.24 -1.48 16 19 C -0.11 -0.90 5.76 -91.77 -0.53 -1.43 16 20 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 21 C -0.04 -0.38 5.05 -104.62 -0.53 -0.91 16 22 C -0.12 -0.95 7.77 -39.58 -0.31 -1.26 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.13 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 26 C -0.11 -0.96 9.74 -39.58 -0.39 -1.34 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.59 5.82 -51.93 -0.30 0.29 16 29 H 0.06 0.47 5.89 -51.93 -0.31 0.16 16 30 H 0.09 0.95 7.69 -51.93 -0.40 0.55 16 31 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 32 H 0.41 4.22 6.75 -34.47 -0.23 3.98 16 33 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 34 H 0.13 2.06 8.14 -51.92 -0.42 1.64 16 35 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 36 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.10 0.73 8.05 -51.93 -0.42 0.32 16 39 H 0.10 0.66 6.09 -51.93 -0.32 0.35 16 40 H 0.12 0.84 5.15 -52.49 -0.27 0.56 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -34.97 367.85 -11.04 -46.01 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.39 Total: 2.73 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: -3.61 Total: -34.20 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.72 Total: -39.65 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -2.05 Total: -39.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 42.76 SS G_CDS: -0.59 Total: 42.18 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.97 -11.04 -46.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.336 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds