Wall clock time and date at job start Tue Mar 31 2020 14:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.56089 * 2 1 4 4 N 1.46499 * 109.47375 * 325.69498 * 3 2 1 5 5 S 1.65599 * 120.00159 * 164.99958 * 4 3 2 6 6 O 1.42098 * 104.27621 * 181.06972 * 5 4 3 7 7 O 1.42104 * 104.27792 * 308.92504 * 5 4 3 8 8 C 1.81397 * 104.45206 * 64.99654 * 5 4 3 9 9 C 1.52996 * 109.47305 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46870 * 179.97438 * 9 8 5 11 11 H 1.08001 * 120.00344 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99478 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99679 * 180.02562 * 12 10 9 14 14 Si 1.86791 * 120.00373 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47203 * 89.99765 * 14 12 10 16 16 H 1.48504 * 109.47113 * 209.99815 * 14 12 10 17 17 H 1.48499 * 109.47159 * 329.99683 * 14 12 10 18 18 C 1.52997 * 117.49537 * 214.31748 * 2 1 3 19 19 C 1.53000 * 117.49776 * 145.69294 * 2 1 3 20 20 H 1.09004 * 117.49237 * 214.97568 * 19 2 1 21 21 C 1.50696 * 117.50175 * 359.97438 * 19 2 1 22 22 C 1.38237 * 119.99839 * 59.73685 * 21 19 2 23 23 C 1.38240 * 119.99721 * 179.81094 * 22 21 19 24 24 C 1.38241 * 119.99694 * 0.42245 * 23 22 21 25 25 C 1.38227 * 120.00098 * 359.81137 * 24 23 22 26 26 C 1.38231 * 120.00408 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46919 * 274.30794 * 1 2 3 28 28 H 1.09000 * 109.47139 * 34.30150 * 1 2 3 29 29 H 1.08994 * 109.47047 * 154.31069 * 1 2 3 30 30 H 1.09004 * 109.46610 * 85.68977 * 3 2 1 31 31 H 1.08996 * 109.47111 * 205.68891 * 3 2 1 32 32 H 0.97003 * 120.00060 * 344.99878 * 4 3 2 33 33 H 1.09001 * 109.47080 * 300.00278 * 8 5 4 34 34 H 1.09005 * 109.46791 * 59.99817 * 8 5 4 35 35 H 1.08993 * 109.47267 * 300.00085 * 9 8 5 36 36 H 1.09003 * 109.46770 * 60.00694 * 9 8 5 37 37 H 0.97002 * 119.99920 * 179.97438 * 13 12 10 38 38 H 1.08999 * 117.49685 * 145.02116 * 18 2 1 39 39 H 1.08999 * 117.52022 * 359.97438 * 18 2 1 40 40 H 1.07995 * 119.99965 * 0.02562 * 22 21 19 41 41 H 1.08002 * 119.99767 * 180.20959 * 23 22 21 42 42 H 1.08004 * 119.99343 * 179.79321 * 24 23 22 43 43 H 1.08004 * 119.99943 * 179.97438 * 25 24 23 44 44 H 1.07994 * 120.00414 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 7 1.3717 2.3131 -0.7784 5 16 1.6279 3.9442 -0.6515 6 8 0.6538 4.5199 -1.5111 7 8 1.6099 4.1941 0.7473 8 6 3.2951 4.1940 -1.3212 9 6 3.6525 5.6804 -1.2587 10 6 5.0378 5.8877 -1.8145 11 1 5.6064 5.0438 -2.1766 12 6 5.5795 7.1548 -1.8608 13 7 6.7883 7.3358 -2.3464 14 14 4.5965 8.6142 -1.2340 15 1 4.8769 8.8164 0.2101 16 1 4.9840 9.8330 -1.9889 17 1 3.1471 8.3536 -1.4251 18 6 2.2364 -1.1209 -0.7651 19 6 2.2365 -1.1210 0.7649 20 1 3.1716 -0.8752 1.2682 21 6 1.3721 -2.1404 1.4612 22 6 0.4810 -2.9049 0.7315 23 6 -0.3091 -3.8427 1.3697 24 6 -0.2143 -4.0098 2.7387 25 6 0.6733 -3.2419 3.4689 26 6 1.4658 -2.3065 2.8303 27 1 -0.3633 0.0772 1.0248 28 1 -0.3633 0.8489 -0.5791 29 1 -0.3633 -0.9260 -0.4455 30 1 2.2773 1.7413 1.0248 31 1 3.1824 1.3085 -0.4455 32 1 0.6796 1.9754 -1.3682 33 1 4.0126 3.6224 -0.7325 34 1 3.3247 3.8568 -2.3574 35 1 2.9351 6.2516 -1.8477 36 1 3.6229 6.0178 -0.2227 37 1 7.1692 8.2273 -2.3793 38 1 3.1715 -0.8750 -1.2684 39 1 1.6115 -1.8587 -1.2683 40 1 0.4047 -2.7720 -0.3375 41 1 -1.0028 -4.4424 0.7992 42 1 -0.8340 -4.7402 3.2377 43 1 0.7470 -3.3721 4.5385 44 1 2.1589 -1.7062 3.4009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339012313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:14 Heat of formation + Delta-G solvation = -52.358007 kcal Electronic energy + Delta-G solvation = -24525.348693 eV Core-core repulsion = 20955.310806 eV Total energy + Delta-G solvation = -3570.037887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94380 -38.81473 -38.13863 -37.02852 -35.88227 -35.47511 -33.46028 -31.85491 -31.46417 -29.32925 -27.86092 -27.08553 -24.70508 -23.27035 -23.17311 -21.48515 -20.38590 -20.12804 -19.37005 -18.46657 -17.81992 -17.40957 -17.04785 -16.40593 -16.37726 -15.90013 -15.80947 -15.42092 -15.21297 -14.90654 -14.82919 -14.61367 -14.17615 -13.96632 -13.79017 -13.54227 -13.35035 -13.22428 -13.12229 -13.06066 -12.94313 -12.85651 -12.77370 -12.32847 -12.22341 -11.94185 -11.81434 -11.73020 -11.70476 -11.34894 -11.29133 -10.83698 -10.80429 -10.28724 -9.76170 -9.37135 -8.35942 -6.41332 -0.69535 0.45090 0.54996 1.32467 1.34474 1.44438 1.81437 2.30075 2.64815 2.78705 2.98143 3.11899 3.25946 3.54600 3.76920 3.88053 3.90933 3.98906 4.05382 4.11838 4.18848 4.26092 4.33982 4.44851 4.58359 4.62075 4.66339 4.74567 4.77055 4.93428 5.02422 5.04224 5.07384 5.09949 5.13932 5.16382 5.22120 5.24438 5.36505 5.48406 5.64144 5.68013 5.77479 6.12811 6.16837 6.17575 6.64857 7.22980 8.79473 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002462 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.397436 B =11372.280867 C =11647.415197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.123 4.123 3 C 0.142 3.858 4 N -1.105 6.105 5 S 2.623 3.377 6 O -0.994 6.994 7 O -0.992 6.992 8 C -0.588 4.588 9 C -0.019 4.019 10 C -0.525 4.525 11 H 0.051 0.949 12 C 0.012 3.988 13 N -0.940 5.940 14 Si 0.925 3.075 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.250 1.250 18 C -0.153 4.153 19 C -0.111 4.111 20 H 0.120 0.880 21 C -0.057 4.057 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.131 4.131 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.425 0.575 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.269 0.731 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.163 -24.929 7.392 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.125 4.125 3 C 0.016 3.984 4 N -0.868 5.868 5 S 2.719 3.281 6 O -0.984 6.984 7 O -0.982 6.982 8 C -0.720 4.720 9 C -0.058 4.058 10 C -0.564 4.564 11 H 0.069 0.931 12 C -0.186 4.186 13 N -0.580 5.580 14 Si 0.748 3.252 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.173 1.173 18 C -0.190 4.190 19 C -0.130 4.130 20 H 0.138 0.862 21 C -0.057 4.057 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.149 4.149 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.264 0.736 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.539 -24.108 7.836 29.223 hybrid contribution 0.479 0.544 -0.307 0.787 sum -14.059 -23.564 7.530 28.454 Atomic orbital electron populations 1.21402 0.91612 1.02680 1.01932 1.21584 0.95493 0.89399 1.05990 1.21051 0.93727 0.87577 0.96063 1.55348 1.49016 1.23871 1.58594 1.04364 0.76901 0.73034 0.73792 1.93519 1.58675 1.77032 1.69219 1.93517 1.87500 1.84409 1.32778 1.30287 1.21832 1.05620 1.14225 1.19381 0.97652 0.90898 0.97841 1.21182 0.99536 0.94371 1.41344 0.93117 1.25880 0.95820 1.02010 0.94938 1.70011 1.16921 1.23764 1.47279 0.86026 0.80550 0.79083 0.79584 1.18561 1.20015 1.17319 1.23524 1.03016 0.99793 0.92618 1.21301 0.99887 0.97119 0.94665 0.86157 1.19228 0.96711 0.96199 0.93609 1.21283 0.96270 0.96255 1.00630 1.21425 0.99556 0.98385 0.95125 1.21445 0.99123 1.00146 0.94605 1.21397 0.96311 0.96094 1.00821 1.21219 1.00398 0.99045 0.94200 0.93078 0.91676 0.90681 0.90455 0.89334 0.73646 0.84014 0.83984 0.95016 0.95055 0.92166 0.87047 0.87138 0.84820 0.84414 0.84518 0.84723 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 8.44 71.98 0.61 -1.30 16 2 C -0.12 -1.94 2.52 -52.18 -0.13 -2.07 16 3 C 0.14 2.68 6.27 86.38 0.54 3.22 16 4 N -1.10 -24.19 5.38 -187.49 -1.01 -25.20 16 5 S 2.62 82.66 5.46 -56.49 -0.31 82.35 16 6 O -0.99 -37.08 18.08 -127.65 -2.31 -39.39 16 7 O -0.99 -37.06 17.50 -127.65 -2.23 -39.29 16 8 C -0.59 -20.15 6.01 71.98 0.43 -19.71 16 9 C -0.02 -0.86 4.05 29.85 0.12 -0.74 16 10 C -0.53 -29.35 9.66 25.60 0.25 -29.11 16 11 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 12 C 0.01 0.69 5.47 84.65 0.46 1.15 16 13 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 14 Si 0.92 43.75 27.47 68.60 1.88 45.63 16 15 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 18 C -0.15 -1.93 9.16 30.60 0.28 -1.65 16 19 C -0.11 -1.65 5.76 -11.54 -0.07 -1.72 16 20 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 21 C -0.06 -0.92 5.05 -19.87 -0.10 -1.02 16 22 C -0.13 -1.80 7.77 22.27 0.17 -1.63 16 23 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 24 C -0.14 -1.78 10.05 22.27 0.22 -1.56 16 25 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 26 C -0.13 -2.11 9.74 22.27 0.22 -1.90 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.03 5.82 -2.39 -0.01 1.02 16 29 H 0.07 0.98 5.89 -2.39 -0.01 0.96 16 30 H 0.08 1.61 7.69 -2.38 -0.02 1.60 16 31 H 0.09 1.37 7.90 -2.39 -0.02 1.35 16 32 H 0.42 7.73 6.75 -96.74 -0.65 7.07 16 33 H 0.14 4.28 8.14 -2.39 -0.02 4.27 16 34 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 35 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 36 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.11 1.26 8.05 -2.39 -0.02 1.24 16 39 H 0.11 1.15 6.09 -2.39 -0.01 1.14 16 40 H 0.13 1.51 5.15 -2.91 -0.02 1.49 16 41 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 42 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 43 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -74.77 367.85 0.08 -74.70 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.30 Total: 19.54 kcal Atomic # 6 Polarization: -64.55 SS G_CDS: 3.46 Total: -61.09 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -0.71 Total: -82.45 kcal Atomic # 8 Polarization: -74.14 SS G_CDS: -4.54 Total: -78.68 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Atomic # 16 Polarization: 82.66 SS G_CDS: -0.31 Total: 82.35 kcal Total: -74.77 0.08 -74.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.338 kcal (2) G-P(sol) polarization free energy of solvation -74.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds