Wall clock time and date at job start Tue Mar 31 2020 14:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 115.56235 * 2 1 4 4 N 1.46496 * 109.46833 * 325.69019 * 3 2 1 5 5 S 1.65603 * 119.99752 * 164.99943 * 4 3 2 6 6 O 1.42094 * 104.27653 * 181.07112 * 5 4 3 7 7 O 1.42100 * 104.27604 * 308.92703 * 5 4 3 8 8 C 1.81395 * 104.45135 * 64.99936 * 5 4 3 9 9 C 1.52999 * 109.47533 * 180.02562 * 8 5 4 10 10 C 1.50700 * 109.47420 * 179.97438 * 9 8 5 11 11 H 1.07991 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99641 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00219 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99455 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47077 * 60.00741 * 14 12 10 16 16 H 1.48500 * 109.47035 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47523 * 300.00211 * 14 12 10 18 18 C 1.53005 * 117.50230 * 214.31108 * 2 1 3 19 19 C 1.53003 * 59.99976 * 252.50935 * 18 2 1 20 20 H 1.08998 * 117.49642 * 107.51337 * 19 18 2 21 21 C 1.50699 * 117.49557 * 252.50678 * 19 18 2 22 22 C 1.38229 * 120.00230 * 8.88687 * 21 19 18 23 23 C 1.38238 * 120.00124 * 180.28369 * 22 21 19 24 24 C 1.38234 * 119.99675 * 359.45911 * 23 22 21 25 25 C 1.38234 * 120.00240 * 0.26327 * 24 23 22 26 26 C 1.38234 * 119.99755 * 188.61053 * 21 19 18 27 27 H 1.09000 * 109.47294 * 274.30468 * 1 2 3 28 28 H 1.08994 * 109.47481 * 34.31349 * 1 2 3 29 29 H 1.09005 * 109.47151 * 154.31134 * 1 2 3 30 30 H 1.09004 * 109.46758 * 85.69257 * 3 2 1 31 31 H 1.09003 * 109.47390 * 205.68937 * 3 2 1 32 32 H 0.96998 * 120.00082 * 344.99888 * 4 3 2 33 33 H 1.09008 * 109.47259 * 299.99842 * 8 5 4 34 34 H 1.08999 * 109.47569 * 59.99855 * 8 5 4 35 35 H 1.09000 * 109.46843 * 300.00282 * 9 8 5 36 36 H 1.09007 * 109.46933 * 59.99641 * 9 8 5 37 37 H 0.97002 * 120.00429 * 179.97438 * 13 12 10 38 38 H 1.08996 * 117.49894 * 145.02057 * 18 2 1 39 39 H 1.08998 * 117.51452 * 359.97438 * 18 2 1 40 40 H 1.08004 * 120.00244 * 0.02562 * 22 21 19 41 41 H 1.08002 * 120.00519 * 179.74530 * 23 22 21 42 42 H 1.07999 * 120.00009 * 180.28390 * 24 23 22 43 43 H 1.07997 * 120.00460 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00274 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 7 1.3716 2.3130 -0.7785 5 16 1.6279 3.9442 -0.6517 6 8 0.6538 4.5198 -1.5113 7 8 1.6098 4.1940 0.7471 8 6 3.2951 4.1939 -1.3214 9 6 3.6530 5.6801 -1.2577 10 6 5.0383 5.8875 -1.8135 11 1 5.6068 5.0437 -2.1755 12 6 5.5799 7.1546 -1.8599 13 7 4.8878 8.1821 -1.4186 14 14 7.2974 7.4115 -2.5481 15 1 7.3389 6.9519 -3.9597 16 1 7.6447 8.8540 -2.4865 17 1 8.2742 6.6329 -1.7451 18 6 2.2365 -1.1210 -0.7650 19 6 2.2365 -1.1210 0.7650 20 1 1.6115 -1.8588 1.2683 21 6 3.5293 -0.7811 1.4608 22 6 4.6033 -0.3075 0.7308 23 6 5.7911 -0.0013 1.3683 24 6 5.9012 -0.1581 2.7373 25 6 4.8253 -0.6262 3.4681 26 6 3.6392 -0.9375 2.8299 27 1 -0.3634 0.0771 1.0248 28 1 -0.3634 0.8487 -0.5793 29 1 -0.3634 -0.9261 -0.4455 30 1 2.2772 1.7413 1.0248 31 1 3.1824 1.3085 -0.4455 32 1 0.6796 1.9752 -1.3683 33 1 4.0126 3.6223 -0.7326 34 1 3.3248 3.8567 -2.3575 35 1 2.9356 6.2521 -1.8462 36 1 3.6234 6.0169 -0.2214 37 1 5.2690 9.0735 -1.4508 38 1 3.1715 -0.8751 -1.2682 39 1 1.6116 -1.8589 -1.2680 40 1 4.5159 -0.1807 -0.3382 41 1 6.6317 0.3648 0.7974 42 1 6.8277 0.0855 3.2359 43 1 4.9111 -0.7483 4.5377 44 1 2.7987 -1.3037 3.4008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339012314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:17 Heat of formation + Delta-G solvation = -33.609670 kcal Electronic energy + Delta-G solvation = -25199.915195 eV Core-core repulsion = 21630.690296 eV Total energy + Delta-G solvation = -3569.224898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.25549 -38.02112 -36.54526 -35.42087 -34.37986 -33.88016 -31.17889 -31.12806 -31.01846 -28.23809 -26.26416 -25.58191 -24.02657 -22.54473 -21.65588 -20.78516 -19.44385 -18.90743 -17.60463 -17.19697 -16.41017 -15.96154 -15.51086 -15.43926 -15.13234 -14.74196 -14.54643 -14.47051 -14.13062 -13.75259 -13.51056 -13.34893 -13.10746 -12.94453 -12.65110 -12.49153 -12.00555 -11.79950 -11.72414 -11.56646 -11.47195 -11.42421 -11.15563 -11.08530 -11.05759 -10.95672 -10.59101 -10.44529 -10.36416 -10.14624 -9.74576 -9.44437 -9.04412 -8.97204 -8.62249 -8.49255 -6.11403 -4.16986 0.81707 1.18923 1.29843 3.11939 3.27334 3.32232 3.33855 3.39975 3.84069 4.20608 4.26497 4.38475 4.49765 4.54251 4.70655 4.75406 4.79816 4.88938 4.99380 5.01598 5.23685 5.26734 5.35479 5.40402 5.46494 5.50401 5.57140 5.65506 5.67584 5.74395 5.78953 5.85042 5.91347 5.92816 5.99030 6.09146 6.36994 6.43429 6.48224 6.50064 6.88722 7.12851 7.31254 7.37821 7.81158 8.18610 8.86003 9.47538 10.99659 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.003948 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.876474 B = 7089.711253 C = 8793.751678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.117 4.117 3 C 0.152 3.848 4 N -1.125 6.125 5 S 2.592 3.408 6 O -0.968 6.968 7 O -0.966 6.966 8 C -0.590 4.590 9 C 0.028 3.972 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.166 4.166 19 C -0.104 4.104 20 H 0.115 0.885 21 C -0.054 4.054 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.114 4.114 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.266 0.734 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -22.509 5.006 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.119 4.119 3 C 0.026 3.974 4 N -0.884 5.884 5 S 2.689 3.311 6 O -0.958 6.958 7 O -0.956 6.956 8 C -0.723 4.723 9 C -0.011 4.011 10 C -0.560 4.560 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.202 4.202 19 C -0.123 4.123 20 H 0.133 0.867 21 C -0.054 4.054 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.132 4.132 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.239 -21.628 5.530 22.723 hybrid contribution 1.306 -0.233 -0.860 1.581 sum -2.933 -21.861 4.670 22.546 Atomic orbital electron populations 1.21367 0.91295 1.02210 1.02648 1.21694 0.95318 0.90356 1.04507 1.20827 0.92812 0.87249 0.96540 1.55886 1.48623 1.25699 1.58231 1.05554 0.78367 0.72103 0.75054 1.93550 1.58195 1.75397 1.68707 1.93542 1.87494 1.83188 1.31337 1.30449 1.19615 1.10629 1.11652 1.18956 0.99062 0.84004 0.99043 1.20955 0.99529 0.93359 1.42125 0.92132 1.25058 0.98105 0.95982 0.95273 1.69940 1.37577 0.99413 1.45909 0.86539 0.84011 0.77230 0.79538 1.20091 1.21066 1.20096 1.23425 1.02728 1.00883 0.93190 1.21228 0.96067 1.01185 0.93795 0.86677 1.19103 0.93627 0.99131 0.93524 1.21138 0.93001 0.99763 1.00146 1.21200 0.97771 0.99251 0.94893 1.21184 0.98937 0.99658 0.94347 1.21133 0.93296 0.99307 0.99825 1.20932 0.97779 1.00753 0.93721 0.91721 0.91271 0.92140 0.89789 0.91428 0.75247 0.86396 0.86108 0.94850 0.94837 0.92476 0.88024 0.88152 0.85744 0.85774 0.86095 0.86107 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.68 37.15 0.36 -0.65 16 2 C -0.12 -1.11 2.52 -154.51 -0.39 -1.50 16 3 C 0.15 1.83 5.03 -4.04 -0.02 1.81 16 4 N -1.13 -14.81 5.38 -10.61 -0.06 -14.87 16 5 S 2.59 46.99 5.46 -107.50 -0.59 46.40 16 6 O -0.97 -20.26 18.08 -57.54 -1.04 -21.30 16 7 O -0.97 -20.48 17.50 -57.54 -1.01 -21.48 16 8 C -0.59 -11.36 6.01 37.16 0.22 -11.13 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 14 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.17 -1.31 9.16 -26.73 -0.24 -1.56 16 19 C -0.10 -0.90 5.76 -91.77 -0.53 -1.43 16 20 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.05 -0.54 5.05 -104.63 -0.53 -1.07 16 22 C -0.12 -1.28 7.77 -39.58 -0.31 -1.59 16 23 C -0.11 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.11 -1.12 9.74 -39.58 -0.39 -1.50 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.62 5.82 -51.93 -0.30 0.31 16 29 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 30 H 0.08 1.15 7.69 -51.93 -0.40 0.75 16 31 H 0.07 0.74 5.89 -51.93 -0.31 0.44 16 32 H 0.41 4.57 6.75 -34.47 -0.23 4.33 16 33 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 34 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 38 H 0.10 0.79 6.09 -51.93 -0.32 0.48 16 39 H 0.10 0.66 8.05 -51.93 -0.42 0.24 16 40 H 0.12 1.15 5.15 -52.48 -0.27 0.88 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -35.15 371.44 -11.37 -46.52 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.42 Total: 4.74 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: -3.56 Total: -35.95 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.68 Total: -40.69 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -2.05 Total: -42.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 46.99 SS G_CDS: -0.59 Total: 46.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.15 -11.37 -46.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.906 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds