Wall clock time and date at job start Tue Mar 31 2020 14:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 115.56235 * 2 1 4 4 N 1.46496 * 109.46833 * 325.69019 * 3 2 1 5 5 S 1.65603 * 119.99752 * 164.99943 * 4 3 2 6 6 O 1.42094 * 104.27653 * 181.07112 * 5 4 3 7 7 O 1.42100 * 104.27604 * 308.92703 * 5 4 3 8 8 C 1.81395 * 104.45135 * 64.99936 * 5 4 3 9 9 C 1.52999 * 109.47533 * 180.02562 * 8 5 4 10 10 C 1.50700 * 109.47420 * 179.97438 * 9 8 5 11 11 H 1.07991 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99641 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00219 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99455 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47077 * 60.00741 * 14 12 10 16 16 H 1.48500 * 109.47035 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47523 * 300.00211 * 14 12 10 18 18 C 1.53005 * 117.50230 * 214.31108 * 2 1 3 19 19 C 1.53003 * 59.99976 * 252.50935 * 18 2 1 20 20 H 1.08998 * 117.49642 * 107.51337 * 19 18 2 21 21 C 1.50699 * 117.49557 * 252.50678 * 19 18 2 22 22 C 1.38229 * 120.00230 * 8.88687 * 21 19 18 23 23 C 1.38238 * 120.00124 * 180.28369 * 22 21 19 24 24 C 1.38234 * 119.99675 * 359.45911 * 23 22 21 25 25 C 1.38234 * 120.00240 * 0.26327 * 24 23 22 26 26 C 1.38234 * 119.99755 * 188.61053 * 21 19 18 27 27 H 1.09000 * 109.47294 * 274.30468 * 1 2 3 28 28 H 1.08994 * 109.47481 * 34.31349 * 1 2 3 29 29 H 1.09005 * 109.47151 * 154.31134 * 1 2 3 30 30 H 1.09004 * 109.46758 * 85.69257 * 3 2 1 31 31 H 1.09003 * 109.47390 * 205.68937 * 3 2 1 32 32 H 0.96998 * 120.00082 * 344.99888 * 4 3 2 33 33 H 1.09008 * 109.47259 * 299.99842 * 8 5 4 34 34 H 1.08999 * 109.47569 * 59.99855 * 8 5 4 35 35 H 1.09000 * 109.46843 * 300.00282 * 9 8 5 36 36 H 1.09007 * 109.46933 * 59.99641 * 9 8 5 37 37 H 0.97002 * 120.00429 * 179.97438 * 13 12 10 38 38 H 1.08996 * 117.49894 * 145.02057 * 18 2 1 39 39 H 1.08998 * 117.51452 * 359.97438 * 18 2 1 40 40 H 1.08004 * 120.00244 * 0.02562 * 22 21 19 41 41 H 1.08002 * 120.00519 * 179.74530 * 23 22 21 42 42 H 1.07999 * 120.00009 * 180.28390 * 24 23 22 43 43 H 1.07997 * 120.00460 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00274 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 7 1.3716 2.3130 -0.7785 5 16 1.6279 3.9442 -0.6517 6 8 0.6538 4.5198 -1.5113 7 8 1.6098 4.1940 0.7471 8 6 3.2951 4.1939 -1.3214 9 6 3.6530 5.6801 -1.2577 10 6 5.0383 5.8875 -1.8135 11 1 5.6068 5.0437 -2.1755 12 6 5.5799 7.1546 -1.8599 13 7 4.8878 8.1821 -1.4186 14 14 7.2974 7.4115 -2.5481 15 1 7.3389 6.9519 -3.9597 16 1 7.6447 8.8540 -2.4865 17 1 8.2742 6.6329 -1.7451 18 6 2.2365 -1.1210 -0.7650 19 6 2.2365 -1.1210 0.7650 20 1 1.6115 -1.8588 1.2683 21 6 3.5293 -0.7811 1.4608 22 6 4.6033 -0.3075 0.7308 23 6 5.7911 -0.0013 1.3683 24 6 5.9012 -0.1581 2.7373 25 6 4.8253 -0.6262 3.4681 26 6 3.6392 -0.9375 2.8299 27 1 -0.3634 0.0771 1.0248 28 1 -0.3634 0.8487 -0.5793 29 1 -0.3634 -0.9261 -0.4455 30 1 2.2772 1.7413 1.0248 31 1 3.1824 1.3085 -0.4455 32 1 0.6796 1.9752 -1.3683 33 1 4.0126 3.6223 -0.7326 34 1 3.3248 3.8567 -2.3575 35 1 2.9356 6.2521 -1.8462 36 1 3.6234 6.0169 -0.2214 37 1 5.2690 9.0735 -1.4508 38 1 3.1715 -0.8751 -1.2682 39 1 1.6116 -1.8589 -1.2680 40 1 4.5159 -0.1807 -0.3382 41 1 6.6317 0.3648 0.7974 42 1 6.8277 0.0855 3.2359 43 1 4.9111 -0.7483 4.5377 44 1 2.7987 -1.3037 3.4008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339012314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:17 Heat of formation + Delta-G solvation = -56.289567 kcal Electronic energy + Delta-G solvation = -25200.898669 eV Core-core repulsion = 21630.690296 eV Total energy + Delta-G solvation = -3570.208372 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97225 -38.77811 -38.15209 -37.03597 -35.89617 -35.42813 -33.13185 -31.88336 -31.75054 -28.90905 -27.58671 -27.24331 -24.70513 -23.60074 -23.27603 -21.47419 -20.40586 -20.17382 -19.10350 -18.43694 -17.91692 -17.08322 -17.06691 -16.53711 -16.38541 -15.94994 -15.83180 -15.38294 -15.14650 -14.88273 -14.61021 -14.42841 -14.20748 -13.88140 -13.73400 -13.66208 -13.45499 -13.22308 -13.13077 -12.90893 -12.88443 -12.79045 -12.62983 -12.28689 -12.21569 -12.16033 -11.88691 -11.80836 -11.74209 -11.29652 -11.24931 -10.79404 -10.63592 -10.30321 -9.76142 -9.35859 -8.25402 -6.39567 -0.69365 0.44515 0.54816 1.40928 1.44451 1.52571 1.82515 2.38340 2.65304 2.79388 3.08021 3.12973 3.24060 3.52409 3.81363 3.84896 3.92997 4.03518 4.06149 4.12859 4.17643 4.29565 4.32249 4.42567 4.58845 4.65570 4.74089 4.75325 4.79164 4.94993 5.01132 5.04498 5.11986 5.15436 5.22038 5.25894 5.26769 5.27628 5.38754 5.63714 5.68317 5.69167 5.74855 6.06145 6.13397 6.16903 6.73638 7.30549 8.86799 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.003948 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.876474 B = 7089.711253 C = 8793.751678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.127 4.127 3 C 0.144 3.856 4 N -1.103 6.103 5 S 2.618 3.382 6 O -0.997 6.997 7 O -0.999 6.999 8 C -0.588 4.588 9 C 0.021 3.979 10 C -0.539 4.539 11 H 0.076 0.924 12 C -0.003 4.003 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.263 1.263 16 H -0.285 1.285 17 H -0.263 1.263 18 C -0.152 4.152 19 C -0.102 4.102 20 H 0.131 0.869 21 C -0.064 4.064 22 C -0.136 4.136 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.125 4.125 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.425 0.575 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.007 0.993 36 H 0.005 0.995 37 H 0.267 0.733 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -25.020 4.200 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.129 4.129 3 C 0.018 3.982 4 N -0.867 5.867 5 S 2.715 3.285 6 O -0.988 6.988 7 O -0.988 6.988 8 C -0.720 4.720 9 C -0.018 4.018 10 C -0.578 4.578 11 H 0.094 0.906 12 C -0.201 4.201 13 N -0.574 5.574 14 Si 0.797 3.203 15 H -0.187 1.187 16 H -0.210 1.210 17 H -0.188 1.188 18 C -0.188 4.188 19 C -0.121 4.121 20 H 0.149 0.851 21 C -0.064 4.064 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.156 4.156 25 C -0.145 4.145 26 C -0.143 4.143 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.025 0.975 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.139 0.861 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.583 -24.153 4.712 24.867 hybrid contribution 1.066 0.484 -0.555 1.296 sum -2.517 -23.668 4.157 24.162 Atomic orbital electron populations 1.21405 0.90622 1.03089 1.02564 1.21610 0.95765 0.89076 1.06415 1.21011 0.93536 0.88333 0.95317 1.55349 1.49046 1.23752 1.58538 1.04471 0.77259 0.73048 0.73743 1.93502 1.58980 1.77072 1.69212 1.93500 1.87655 1.84453 1.33238 1.30337 1.21290 1.06463 1.13913 1.18818 0.98281 0.88036 0.96697 1.21472 1.00431 0.94070 1.41806 0.90562 1.26110 1.02780 0.95720 0.95528 1.70094 1.39839 0.99996 1.47469 0.85375 0.78429 0.77187 0.79326 1.18713 1.21004 1.18758 1.23535 1.02686 0.99891 0.92710 1.21303 0.95391 1.00807 0.94551 0.85119 1.19343 0.94219 0.98988 0.93852 1.21339 0.93163 1.00032 1.00789 1.21435 0.98326 0.99762 0.95396 1.21449 0.99768 0.99844 0.94512 1.21433 0.93234 0.98965 1.00875 1.21237 0.98386 1.00672 0.94026 0.92117 0.91958 0.89919 0.91715 0.90225 0.73562 0.84304 0.83676 0.97493 0.97654 0.92400 0.87851 0.86130 0.84821 0.85166 0.84918 0.84391 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.68 71.98 0.70 -1.05 16 2 C -0.13 -2.09 2.52 -52.18 -0.13 -2.22 16 3 C 0.14 3.24 5.03 86.38 0.43 3.67 16 4 N -1.10 -27.56 5.38 -187.49 -1.01 -28.57 16 5 S 2.62 95.04 5.46 -56.49 -0.31 94.73 16 6 O -1.00 -42.04 18.08 -127.65 -2.31 -44.35 16 7 O -1.00 -43.15 17.50 -127.65 -2.23 -45.38 16 8 C -0.59 -22.37 6.01 71.98 0.43 -21.94 16 9 C 0.02 1.08 4.98 29.85 0.15 1.23 16 10 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 11 H 0.08 3.87 7.74 -2.92 -0.02 3.85 16 12 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 13 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 14 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 18 C -0.15 -1.90 9.16 30.60 0.28 -1.62 16 19 C -0.10 -1.50 5.76 -11.54 -0.07 -1.57 16 20 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.06 -1.19 5.05 -19.87 -0.10 -1.29 16 22 C -0.14 -2.65 7.77 22.27 0.17 -2.48 16 23 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 24 C -0.14 -2.69 10.05 22.27 0.22 -2.47 16 25 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 26 C -0.13 -2.29 9.74 22.27 0.22 -2.07 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.98 5.82 -2.39 -0.01 0.97 16 29 H 0.08 0.84 7.90 -2.38 -0.02 0.82 16 30 H 0.06 1.73 7.69 -2.38 -0.02 1.71 16 31 H 0.08 1.60 5.89 -2.39 -0.01 1.59 16 32 H 0.43 8.64 6.75 -96.74 -0.65 7.98 16 33 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 34 H 0.15 4.77 8.14 -2.39 -0.02 4.75 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.01 0.29 8.14 -2.38 -0.02 0.28 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.10 1.28 6.09 -2.39 -0.01 1.27 16 39 H 0.12 1.06 8.05 -2.39 -0.02 1.04 16 40 H 0.13 2.22 5.15 -2.91 -0.01 2.21 16 41 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -76.98 371.44 0.25 -76.73 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.35 Total: 24.21 kcal Atomic # 6 Polarization: -69.19 SS G_CDS: 3.45 Total: -65.73 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -0.72 Total: -85.42 kcal Atomic # 8 Polarization: -85.19 SS G_CDS: -4.54 Total: -89.73 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 95.04 SS G_CDS: -0.31 Total: 94.73 kcal Total: -76.98 0.25 -76.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.440 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds