Wall clock time and date at job start Tue Mar 31 2020 14:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21254 * 120.00362 * 2 1 4 4 C 1.47187 * 119.99828 * 179.97438 * 2 1 3 5 5 C 1.39610 * 120.10154 * 5.76659 * 4 2 1 6 6 C 1.39258 * 119.67416 * 180.25456 * 5 4 2 7 7 C 1.47817 * 120.06202 * 179.74962 * 6 5 4 8 8 O 1.21560 * 119.99629 * 359.72117 * 7 6 5 9 9 N 1.34781 * 120.00112 * 179.72803 * 7 6 5 10 10 C 1.39008 * 119.99711 * 185.65827 * 9 7 6 11 11 C 1.38685 * 120.29231 * 19.05224 * 10 9 7 12 12 C 1.38203 * 120.02985 * 180.28002 * 11 10 9 13 13 C 1.38878 * 120.61926 * 359.73705 * 12 11 10 14 14 C 1.36455 * 120.58432 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.94886 * 0.02593 * 14 13 12 16 16 C 1.41055 * 120.30271 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99584 * 206.22281 * 16 15 14 18 18 C 1.39963 * 120.00088 * 26.22572 * 16 15 14 19 19 N 1.30844 * 119.99861 * 199.41827 * 18 16 15 20 20 Si 1.86798 * 119.99994 * 19.40920 * 18 16 15 21 21 H 1.48498 * 109.47398 * 270.00147 * 20 18 16 22 22 H 1.48496 * 109.47284 * 30.00783 * 20 18 16 23 23 H 1.48504 * 109.46881 * 150.00140 * 20 18 16 24 24 C 1.39770 * 119.87487 * 359.47520 * 6 5 4 25 25 C 1.38089 * 120.19774 * 0.24869 * 24 6 5 26 26 C 1.38025 * 120.33143 * 0.02940 * 25 24 6 27 27 C 1.50704 * 119.94060 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.46867 * 270.00182 * 1 2 3 29 29 H 1.09002 * 109.47178 * 30.00215 * 1 2 3 30 30 H 1.09002 * 109.47350 * 149.99878 * 1 2 3 31 31 H 1.08000 * 120.16362 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99815 * 5.65305 * 9 7 6 33 33 H 1.07998 * 119.98024 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.68470 * 179.76658 * 12 11 10 35 35 H 1.07998 * 119.70755 * 180.02562 * 13 12 11 36 36 H 1.08004 * 120.02329 * 180.02562 * 14 13 12 37 37 H 0.97003 * 119.99986 * 354.92864 * 19 18 16 38 38 H 1.08000 * 119.90046 * 180.27919 * 24 6 5 39 39 H 1.08002 * 119.83062 * 180.02562 * 25 24 6 40 40 H 1.08997 * 109.46643 * 97.18046 * 27 26 25 41 41 H 1.08997 * 109.47446 * 217.18624 * 27 26 25 42 42 H 1.08999 * 109.46970 * 337.18714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5522 -2.4820 -0.1202 6 6 2.2569 -3.6831 -0.1133 7 6 1.5339 -4.9665 -0.2351 8 8 0.3225 -4.9744 -0.3364 9 7 2.2176 -6.1280 -0.2338 10 6 1.5524 -7.3263 -0.4659 11 6 0.3073 -7.3283 -1.0767 12 6 -0.3518 -8.5225 -1.2996 13 6 0.2232 -9.7290 -0.9222 14 6 1.4497 -9.7567 -0.3248 15 6 2.1423 -8.5551 -0.0861 16 6 3.4104 -8.5750 0.5314 17 1 3.7532 -7.7157 1.0887 18 6 4.2243 -9.7084 0.4219 19 7 5.2006 -9.8973 1.2723 20 14 3.9167 -10.9514 -0.9381 21 1 2.9662 -11.9861 -0.4574 22 1 3.3404 -10.2602 -2.1193 23 1 5.1993 -11.5959 -1.3189 24 6 3.6497 -3.6724 0.0032 25 6 4.3281 -2.4750 0.1167 26 6 3.6375 -1.2799 0.1165 27 6 4.3867 0.0217 0.2413 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 0.4764 -2.4846 -0.2149 32 1 3.1738 -6.1277 -0.0709 33 1 -0.1496 -6.3959 -1.3737 34 1 -1.3229 -8.5172 -1.7722 35 1 -0.3047 -10.6534 -1.1038 36 1 1.8886 -10.7002 -0.0353 37 1 5.4071 -9.2173 1.9326 38 1 4.1970 -4.6034 0.0041 39 1 5.4044 -2.4737 0.2060 40 1 4.5408 0.4486 -0.7496 41 1 3.8088 0.7167 0.8505 42 1 5.3525 -0.1588 0.7134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344335647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:25 Heat of formation + Delta-G solvation = -24.950596 kcal Electronic energy + Delta-G solvation = -26002.487031 eV Core-core repulsion = 22298.193667 eV Total energy + Delta-G solvation = -3704.293364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69482 -39.76923 -38.24851 -37.26933 -34.19688 -33.83655 -33.04084 -32.26640 -30.33178 -29.61721 -28.95583 -27.23242 -24.91659 -23.92207 -23.05345 -21.83393 -20.96656 -20.30287 -19.29069 -18.32095 -17.73791 -16.78806 -15.96164 -15.78412 -15.65449 -15.35877 -15.00518 -14.68147 -14.39764 -14.22344 -14.18471 -13.73822 -13.65835 -13.41833 -12.86716 -12.65202 -12.57960 -12.40881 -12.25023 -12.18018 -12.13796 -11.95444 -11.67164 -11.52733 -11.01620 -10.86483 -10.58735 -9.92197 -9.82397 -9.72227 -9.52509 -9.26147 -9.23628 -8.97777 -8.88098 -7.82395 -7.44666 -7.08865 -4.63314 0.37406 0.83800 2.05947 2.44537 2.64867 3.11918 3.13925 3.29929 3.47727 3.56890 3.82233 3.83274 3.92449 4.46900 4.49072 4.56067 4.75834 4.89526 4.92601 5.06414 5.16963 5.21923 5.32458 5.37710 5.45354 5.53351 5.67801 5.75221 5.87872 6.01473 6.05297 6.08544 6.15737 6.28344 6.32520 6.54306 6.60354 6.73705 6.93749 7.24693 7.27848 7.28549 7.43242 7.58586 7.76911 7.83791 8.11705 8.25473 8.39075 8.58908 8.72411 9.87754 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.003262 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.347795 B = 8582.009896 C = 9927.345942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.399 3.601 3 O -0.458 6.458 4 C -0.189 4.189 5 C -0.012 4.012 6 C -0.142 4.142 7 C 0.538 3.462 8 O -0.534 6.534 9 N -0.626 5.626 10 C 0.019 3.981 11 C -0.090 4.090 12 C -0.230 4.230 13 C -0.085 4.085 14 C -0.235 4.235 15 C 0.088 3.912 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.046 3.954 19 N -0.811 5.811 20 Si 1.076 2.924 21 H -0.276 1.276 22 H -0.262 1.262 23 H -0.291 1.291 24 C -0.051 4.051 25 C -0.141 4.141 26 C -0.007 4.007 27 C -0.124 4.124 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.405 0.595 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.286 0.714 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 14.097 -2.416 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.279 3.721 3 O -0.335 6.335 4 C -0.190 4.190 5 C -0.031 4.031 6 C -0.145 4.145 7 C 0.327 3.673 8 O -0.415 6.415 9 N -0.267 5.267 10 C -0.075 4.075 11 C -0.110 4.110 12 C -0.250 4.250 13 C -0.104 4.104 14 C -0.255 4.255 15 C 0.083 3.917 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.175 4.175 19 N -0.433 5.433 20 Si 0.902 3.098 21 H -0.203 1.203 22 H -0.187 1.187 23 H -0.219 1.219 24 C -0.070 4.070 25 C -0.159 4.159 26 C -0.007 4.007 27 C -0.180 4.180 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.165 0.835 32 H 0.242 0.758 33 H 0.150 0.850 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.505 13.234 -2.998 13.652 hybrid contribution 0.064 1.165 0.993 1.532 sum -1.441 14.399 -2.005 14.609 Atomic orbital electron populations 1.22270 0.93576 1.05180 1.05017 1.22413 0.91682 0.87328 0.70724 1.90483 1.71556 1.34490 1.36940 1.20294 0.93998 0.94808 1.09895 1.21581 1.00797 0.89767 0.90929 1.20015 0.93790 0.94020 1.06706 1.18128 0.87101 0.83509 0.78599 1.90641 1.13369 1.86960 1.50490 1.42852 1.11953 1.04878 1.66982 1.17706 0.96548 0.84438 1.08771 1.21192 0.93933 0.98663 0.97167 1.20360 1.00934 0.92306 1.11385 1.20405 0.95315 0.96606 0.98070 1.20707 0.97059 0.97230 1.10470 1.17476 0.93688 0.89786 0.90704 1.20391 1.00819 1.03436 1.30463 0.90787 1.27272 0.92670 0.98828 0.98686 1.70567 1.27482 1.33423 1.11838 0.83551 0.75236 0.75309 0.75670 1.20280 1.18664 1.21855 1.21689 0.93321 0.98970 0.92979 1.21020 1.00507 0.91234 1.03092 1.20401 0.92479 0.96162 0.91693 1.21143 0.99380 0.94072 1.03429 0.88299 0.89330 0.89150 0.83514 0.75757 0.85024 0.88526 0.88691 0.87332 0.90263 0.84796 0.84679 0.90324 0.88971 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 9.86 36.00 0.36 -1.24 16 2 C 0.40 4.31 7.16 -30.68 -0.22 4.09 16 3 O -0.46 -5.82 14.07 5.58 0.08 -5.74 16 4 C -0.19 -2.22 5.86 -105.11 -0.62 -2.84 16 5 C -0.01 -0.15 8.94 -38.69 -0.35 -0.50 16 6 C -0.14 -2.07 5.87 -105.03 -0.62 -2.68 16 7 C 0.54 9.88 7.62 -12.34 -0.09 9.79 16 8 O -0.53 -11.03 13.20 5.31 0.07 -10.96 16 9 N -0.63 -12.34 5.13 -10.34 -0.05 -12.39 16 10 C 0.02 0.45 6.54 -83.20 -0.54 -0.10 16 11 C -0.09 -2.02 8.78 -39.43 -0.35 -2.37 16 12 C -0.23 -4.94 10.04 -39.36 -0.39 -5.33 16 13 C -0.09 -1.84 9.97 -39.99 -0.40 -2.24 16 14 C -0.24 -5.54 7.26 -39.28 -0.29 -5.82 16 15 C 0.09 2.14 5.20 -106.65 -0.55 1.58 16 16 C -0.52 -12.90 8.77 -37.87 -0.33 -13.23 16 17 H 0.07 1.82 7.18 -52.49 -0.38 1.44 16 18 C 0.05 1.12 5.41 -17.33 -0.09 1.03 16 19 N -0.81 -20.47 13.66 55.55 0.76 -19.71 16 20 Si 1.08 23.21 24.90 -169.99 -4.23 18.98 16 21 H -0.28 -5.71 6.39 56.52 0.36 -5.35 16 22 H -0.26 -5.64 7.04 56.52 0.40 -5.24 16 23 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 24 C -0.05 -0.64 9.54 -39.06 -0.37 -1.01 16 25 C -0.14 -1.54 9.64 -39.71 -0.38 -1.92 16 26 C -0.01 -0.08 5.93 -104.06 -0.62 -0.69 16 27 C -0.12 -1.22 8.71 36.01 0.31 -0.91 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.65 6.27 -51.93 -0.33 0.33 16 31 H 0.15 1.73 5.83 -52.49 -0.31 1.42 16 32 H 0.41 7.28 5.36 -40.82 -0.22 7.06 16 33 H 0.13 2.93 5.37 -52.49 -0.28 2.65 16 34 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.11 2.51 4.16 -52.48 -0.22 2.29 16 37 H 0.29 6.98 8.73 -40.82 -0.36 6.63 16 38 H 0.13 1.56 6.40 -52.49 -0.34 1.22 16 39 H 0.14 1.15 8.05 -52.49 -0.42 0.73 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.00 5.87 -51.93 -0.30 0.69 16 42 H 0.06 0.51 8.03 -51.93 -0.42 0.09 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -29.03 344.37 -8.25 -37.28 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -4.52 Total: 11.74 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -5.55 Total: -24.38 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.71 Total: -32.11 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.15 Total: -16.70 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.23 Total: 18.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.03 -8.25 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.330 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds