Wall clock time and date at job start Tue Mar 31 2020 14:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21254 * 120.00362 * 2 1 4 4 C 1.47187 * 119.99828 * 179.97438 * 2 1 3 5 5 C 1.39610 * 120.10154 * 5.76659 * 4 2 1 6 6 C 1.39258 * 119.67416 * 180.25456 * 5 4 2 7 7 C 1.47817 * 120.06202 * 179.74962 * 6 5 4 8 8 O 1.21560 * 119.99629 * 359.72117 * 7 6 5 9 9 N 1.34781 * 120.00112 * 179.72803 * 7 6 5 10 10 C 1.39008 * 119.99711 * 185.65827 * 9 7 6 11 11 C 1.38685 * 120.29231 * 19.05224 * 10 9 7 12 12 C 1.38203 * 120.02985 * 180.28002 * 11 10 9 13 13 C 1.38878 * 120.61926 * 359.73705 * 12 11 10 14 14 C 1.36455 * 120.58432 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.94886 * 0.02593 * 14 13 12 16 16 C 1.41055 * 120.30271 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99584 * 206.22281 * 16 15 14 18 18 C 1.39963 * 120.00088 * 26.22572 * 16 15 14 19 19 N 1.30844 * 119.99861 * 199.41827 * 18 16 15 20 20 Si 1.86798 * 119.99994 * 19.40920 * 18 16 15 21 21 H 1.48498 * 109.47398 * 270.00147 * 20 18 16 22 22 H 1.48496 * 109.47284 * 30.00783 * 20 18 16 23 23 H 1.48504 * 109.46881 * 150.00140 * 20 18 16 24 24 C 1.39770 * 119.87487 * 359.47520 * 6 5 4 25 25 C 1.38089 * 120.19774 * 0.24869 * 24 6 5 26 26 C 1.38025 * 120.33143 * 0.02940 * 25 24 6 27 27 C 1.50704 * 119.94060 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.46867 * 270.00182 * 1 2 3 29 29 H 1.09002 * 109.47178 * 30.00215 * 1 2 3 30 30 H 1.09002 * 109.47350 * 149.99878 * 1 2 3 31 31 H 1.08000 * 120.16362 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99815 * 5.65305 * 9 7 6 33 33 H 1.07998 * 119.98024 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.68470 * 179.76658 * 12 11 10 35 35 H 1.07998 * 119.70755 * 180.02562 * 13 12 11 36 36 H 1.08004 * 120.02329 * 180.02562 * 14 13 12 37 37 H 0.97003 * 119.99986 * 354.92864 * 19 18 16 38 38 H 1.08000 * 119.90046 * 180.27919 * 24 6 5 39 39 H 1.08002 * 119.83062 * 180.02562 * 25 24 6 40 40 H 1.08997 * 109.46643 * 97.18046 * 27 26 25 41 41 H 1.08997 * 109.47446 * 217.18624 * 27 26 25 42 42 H 1.08999 * 109.46970 * 337.18714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5522 -2.4820 -0.1202 6 6 2.2569 -3.6831 -0.1133 7 6 1.5339 -4.9665 -0.2351 8 8 0.3225 -4.9744 -0.3364 9 7 2.2176 -6.1280 -0.2338 10 6 1.5524 -7.3263 -0.4659 11 6 0.3073 -7.3283 -1.0767 12 6 -0.3518 -8.5225 -1.2996 13 6 0.2232 -9.7290 -0.9222 14 6 1.4497 -9.7567 -0.3248 15 6 2.1423 -8.5551 -0.0861 16 6 3.4104 -8.5750 0.5314 17 1 3.7532 -7.7157 1.0887 18 6 4.2243 -9.7084 0.4219 19 7 5.2006 -9.8973 1.2723 20 14 3.9167 -10.9514 -0.9381 21 1 2.9662 -11.9861 -0.4574 22 1 3.3404 -10.2602 -2.1193 23 1 5.1993 -11.5959 -1.3189 24 6 3.6497 -3.6724 0.0032 25 6 4.3281 -2.4750 0.1167 26 6 3.6375 -1.2799 0.1165 27 6 4.3867 0.0217 0.2413 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 0.4764 -2.4846 -0.2149 32 1 3.1738 -6.1277 -0.0709 33 1 -0.1496 -6.3959 -1.3737 34 1 -1.3229 -8.5172 -1.7722 35 1 -0.3047 -10.6534 -1.1038 36 1 1.8886 -10.7002 -0.0353 37 1 5.4071 -9.2173 1.9326 38 1 4.1970 -4.6034 0.0041 39 1 5.4044 -2.4737 0.2060 40 1 4.5408 0.4486 -0.7496 41 1 3.8088 0.7167 0.8505 42 1 5.3525 -0.1588 0.7134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344335647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:24 Heat of formation + Delta-G solvation = -39.887831 kcal Electronic energy + Delta-G solvation = -26003.134758 eV Core-core repulsion = 22298.193667 eV Total energy + Delta-G solvation = -3704.941091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87369 -41.01620 -39.50003 -38.70028 -35.78591 -35.63946 -34.02003 -33.22064 -32.12590 -30.57353 -30.35235 -28.28116 -26.65013 -24.96654 -24.36718 -23.34683 -22.15246 -21.75953 -20.55405 -20.11050 -19.07006 -18.23197 -17.14979 -16.84261 -16.72293 -16.49131 -16.34659 -16.14095 -15.95991 -15.43717 -15.20241 -15.06112 -14.95096 -14.52011 -14.42859 -14.37892 -13.93217 -13.55499 -13.31088 -13.10598 -13.03528 -12.95909 -12.87519 -12.72308 -12.60476 -12.41769 -12.27979 -11.66773 -11.49815 -11.23246 -10.97743 -10.65298 -10.48945 -10.21327 -9.95900 -9.64770 -9.29466 -8.81709 -6.50514 -0.59823 -0.19754 0.72933 0.84856 1.20544 1.40649 1.56404 1.77925 1.88707 2.16245 2.18995 2.63035 2.70570 2.99269 3.47527 3.52155 3.59644 3.79806 3.88108 4.05871 4.21555 4.32096 4.38422 4.46692 4.52700 4.57627 4.63181 4.66935 4.75123 4.83508 4.87365 4.97946 4.98021 5.04302 5.14172 5.17190 5.21933 5.40585 5.42877 5.54956 5.62250 5.65568 5.89072 6.01360 6.03609 6.36370 6.44366 6.55756 6.63374 6.83285 7.15509 8.00509 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.003262 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.347795 B = 8582.009896 C = 9927.345942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.400 3.600 3 O -0.478 6.478 4 C -0.195 4.195 5 C -0.007 4.007 6 C -0.164 4.164 7 C 0.541 3.459 8 O -0.560 6.560 9 N -0.632 5.632 10 C 0.016 3.984 11 C -0.108 4.108 12 C -0.220 4.220 13 C -0.091 4.091 14 C -0.249 4.249 15 C 0.063 3.937 16 C -0.541 4.541 17 H 0.061 0.939 18 C 0.019 3.981 19 N -0.837 5.837 20 Si 1.102 2.898 21 H -0.261 1.261 22 H -0.264 1.264 23 H -0.284 1.284 24 C -0.052 4.052 25 C -0.135 4.135 26 C -0.007 4.007 27 C -0.121 4.121 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.154 0.846 32 H 0.411 0.589 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.281 0.719 38 H 0.138 0.862 39 H 0.164 0.836 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 14.906 -3.185 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.281 3.719 3 O -0.357 6.357 4 C -0.196 4.196 5 C -0.026 4.026 6 C -0.167 4.167 7 C 0.332 3.668 8 O -0.442 6.442 9 N -0.273 5.273 10 C -0.079 4.079 11 C -0.128 4.128 12 C -0.240 4.240 13 C -0.109 4.109 14 C -0.268 4.268 15 C 0.059 3.941 16 C -0.570 4.570 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.460 5.460 20 Si 0.925 3.075 21 H -0.187 1.187 22 H -0.188 1.188 23 H -0.211 1.211 24 C -0.071 4.071 25 C -0.153 4.153 26 C -0.007 4.007 27 C -0.177 4.177 28 H 0.132 0.868 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.171 0.829 32 H 0.249 0.751 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.234 14.059 -3.757 14.722 hybrid contribution 0.176 1.104 1.207 1.645 sum -2.059 15.163 -2.549 15.513 Atomic orbital electron populations 1.22301 0.91195 1.06033 1.06184 1.22722 0.92928 0.86472 0.69785 1.90484 1.72240 1.34897 1.38051 1.20495 0.94496 0.94938 1.09702 1.21641 1.01176 0.89459 0.90356 1.19775 0.94565 0.92525 1.09813 1.18672 0.86966 0.84183 0.76983 1.90601 1.14571 1.87471 1.51509 1.42904 1.12295 1.04598 1.67541 1.17966 0.96815 0.85290 1.07857 1.21410 0.94100 0.99464 0.97875 1.20792 1.01741 0.91783 1.09639 1.20763 0.94736 0.98186 0.97260 1.20926 0.97965 0.97025 1.10888 1.17686 0.93926 0.90863 0.91601 1.20369 1.01595 1.03493 1.31544 0.92076 1.28092 0.92213 0.99970 0.99384 1.70625 1.28767 1.33738 1.12874 0.83215 0.75777 0.74491 0.74038 1.18708 1.18837 1.21109 1.21787 0.92600 0.99994 0.92724 1.21294 1.01862 0.90241 1.01863 1.20755 0.92602 0.97058 0.90296 1.21149 1.00039 0.92887 1.03629 0.86833 0.88232 0.88528 0.82866 0.75117 0.84882 0.85553 0.85230 0.87200 0.90855 0.84441 0.81875 0.89971 0.89871 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.75 9.86 71.24 0.70 -2.05 16 2 C 0.40 8.04 7.16 28.04 0.20 8.25 16 3 O -0.48 -11.51 14.07 -2.95 -0.04 -11.55 16 4 C -0.20 -4.32 5.86 -20.18 -0.12 -4.44 16 5 C -0.01 -0.18 8.94 22.85 0.20 0.02 16 6 C -0.16 -4.71 5.87 -20.13 -0.12 -4.83 16 7 C 0.54 20.01 7.62 86.78 0.66 20.68 16 8 O -0.56 -23.16 13.20 -3.91 -0.05 -23.21 16 9 N -0.63 -25.33 5.13 -304.89 -1.56 -26.90 16 10 C 0.02 0.72 6.54 38.91 0.25 0.97 16 11 C -0.11 -4.80 8.78 22.37 0.20 -4.61 16 12 C -0.22 -8.94 10.04 22.41 0.22 -8.71 16 13 C -0.09 -3.71 9.97 22.01 0.22 -3.49 16 14 C -0.25 -11.46 7.26 22.46 0.16 -11.30 16 15 C 0.06 3.10 5.20 -21.18 -0.11 2.99 16 16 C -0.54 -27.37 8.77 23.38 0.21 -27.17 16 17 H 0.06 3.13 7.18 -2.91 -0.02 3.11 16 18 C 0.02 0.94 5.41 85.26 0.46 1.40 16 19 N -0.84 -43.15 13.66 21.83 0.30 -42.85 16 20 Si 1.10 46.50 24.90 68.60 1.71 48.21 16 21 H -0.26 -10.30 6.39 99.48 0.64 -9.67 16 22 H -0.26 -11.08 7.04 99.48 0.70 -10.38 16 23 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 24 C -0.05 -1.27 9.54 22.60 0.22 -1.06 16 25 C -0.14 -2.69 9.64 22.18 0.21 -2.48 16 26 C -0.01 -0.14 5.93 -19.50 -0.12 -0.25 16 27 C -0.12 -2.12 8.71 71.24 0.62 -1.50 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.22 6.27 -2.39 -0.01 1.20 16 31 H 0.15 3.48 5.83 -2.91 -0.02 3.46 16 32 H 0.41 15.21 5.36 -92.71 -0.50 14.71 16 33 H 0.13 5.85 5.37 -2.92 -0.02 5.83 16 34 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 35 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.11 4.96 4.16 -2.91 -0.01 4.95 16 37 H 0.28 14.20 8.73 -92.71 -0.81 13.39 16 38 H 0.14 3.19 6.40 -2.91 -0.02 3.17 16 39 H 0.16 2.30 8.05 -2.91 -0.02 2.28 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.66 5.87 -2.39 -0.01 1.65 16 42 H 0.08 1.11 8.03 -2.39 -0.02 1.09 16 Total: -1.00 -62.38 344.37 4.91 -57.47 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.48 Total: 36.39 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 4.08 Total: -37.57 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.26 Total: -69.75 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.09 Total: -34.76 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.71 Total: 48.21 kcal Total: -62.38 4.91 -57.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.587 kcal (2) G-P(sol) polarization free energy of solvation -62.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds