Wall clock time and date at job start Tue Mar 31 2020 14:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38258 * 120.00486 * 2 1 4 4 C 1.38209 * 120.00369 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99820 * 0.03016 * 4 3 2 6 6 C 1.38212 * 120.00037 * 359.69428 * 5 4 3 7 7 C 1.38211 * 120.00050 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99577 * 0.02562 * 7 2 1 9 9 S 1.81397 * 109.47332 * 90.00116 * 8 7 2 10 10 O 1.42098 * 110.54172 * 68.37240 * 9 8 7 11 11 O 1.42097 * 110.54166 * 291.62029 * 9 8 7 12 12 N 1.65605 * 104.45020 * 179.97438 * 9 8 7 13 13 C 1.46502 * 119.99873 * 269.99839 * 12 9 8 14 14 C 1.50697 * 109.47079 * 265.00173 * 13 12 9 15 15 H 1.08000 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99754 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00085 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46900 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47397 * 119.99414 * 18 16 14 21 21 H 1.48500 * 109.47374 * 239.99779 * 18 16 14 22 22 C 1.46499 * 119.99782 * 89.99811 * 12 9 8 23 23 C 1.53000 * 109.46840 * 95.00317 * 22 12 9 24 24 C 1.53003 * 117.49371 * 243.61805 * 23 22 12 25 25 C 1.53001 * 117.49608 * 174.99880 * 23 22 12 26 26 H 1.09002 * 109.46725 * 270.01977 * 1 2 3 27 27 H 1.09004 * 109.46896 * 30.01379 * 1 2 3 28 28 H 1.08994 * 109.47550 * 150.02419 * 1 2 3 29 29 H 1.08000 * 119.99263 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.00010 * 179.97438 * 4 3 2 31 31 H 1.08000 * 120.00017 * 179.97438 * 5 4 3 32 32 H 1.08005 * 120.00150 * 180.30534 * 6 5 4 33 33 H 1.08996 * 109.47244 * 329.99587 * 8 7 2 34 34 H 1.09007 * 109.46837 * 210.00183 * 8 7 2 35 35 H 1.08998 * 109.47222 * 25.00345 * 13 12 9 36 36 H 1.09000 * 109.46517 * 144.99933 * 13 12 9 37 37 H 0.97003 * 120.00108 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.47391 * 334.99987 * 22 12 9 39 39 H 1.09001 * 109.46813 * 215.00043 * 22 12 9 40 40 H 1.08995 * 115.55630 * 29.32490 * 23 22 12 41 41 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 42 42 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 43 43 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 44 44 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0004 6 6 3.5806 -1.1970 0.0062 7 6 2.1980 -1.1969 0.0005 8 6 1.4444 -2.5020 0.0005 9 16 1.1427 -3.0261 -1.7097 10 8 2.3623 -3.3883 -2.3427 11 8 0.2198 -2.1514 -2.3438 12 7 0.3184 -4.4551 -1.5647 13 6 1.0527 -5.7211 -1.5002 14 6 1.1360 -6.3243 -2.8786 15 1 0.6864 -5.8157 -3.7187 16 6 1.7851 -7.5260 -3.0672 17 7 2.3321 -8.1455 -2.0442 18 14 1.8878 -8.2741 -4.7757 19 1 1.1976 -7.3873 -5.7466 20 1 3.3128 -8.4225 -5.1665 21 1 1.2340 -9.6074 -4.7724 22 6 -1.1452 -4.4531 -1.5009 23 6 -1.7170 -4.6870 -2.9007 24 6 -2.5473 -3.5619 -3.5216 25 6 -3.2343 -4.8368 -3.0280 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5134 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1325 0.0001 31 1 5.3517 -0.0001 0.0004 32 1 4.1205 -2.1324 0.0111 33 1 0.4919 -2.3716 0.5140 34 1 2.0333 -3.2616 0.5148 35 1 2.0586 -5.5388 -1.1220 36 1 0.5329 -6.4089 -0.8333 37 1 2.7885 -8.9911 -2.1767 38 1 -1.4912 -3.4909 -1.1232 39 1 -1.4809 -5.2472 -0.8339 40 1 -1.0947 -5.2817 -3.5694 41 1 -2.6859 -2.6549 -2.9332 42 1 -2.4713 -3.4161 -4.5992 43 1 -3.6102 -5.5297 -3.7808 44 1 -3.8252 -4.7690 -2.1146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348101304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:12 Heat of formation + Delta-G solvation = -43.548159 kcal Electronic energy + Delta-G solvation = -26090.328276 eV Core-core repulsion = 22520.672412 eV Total energy + Delta-G solvation = -3569.655864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.52569 -38.84414 -38.05443 -36.83394 -36.31615 -34.48734 -34.36578 -33.18719 -29.60472 -28.86514 -27.53422 -27.05396 -24.30380 -23.17703 -23.06008 -21.90053 -21.55020 -19.73101 -18.64786 -18.57510 -17.73369 -17.29841 -16.95696 -16.72634 -16.25381 -16.10598 -15.86128 -15.22139 -15.06063 -14.64817 -14.35386 -14.27108 -14.03641 -13.95007 -13.76425 -13.47647 -13.29348 -13.19840 -13.03449 -12.91034 -12.89813 -12.79478 -12.58477 -12.40051 -12.24687 -12.10999 -11.98303 -11.95046 -11.87823 -11.48597 -11.13153 -10.63595 -10.55788 -9.92849 -9.71815 -9.48132 -8.17842 -6.25829 -0.78293 0.36963 0.38895 1.35480 1.38330 1.49044 1.84513 2.41245 2.72085 3.00686 3.04911 3.13975 3.20728 3.40372 3.76403 3.95482 3.96835 4.01779 4.04373 4.18454 4.20101 4.38991 4.40543 4.42181 4.53404 4.57918 4.78203 4.80416 4.85526 4.88740 4.89613 5.04171 5.05325 5.12804 5.21992 5.29603 5.36863 5.42812 5.45344 5.51987 5.56637 5.61746 5.74390 5.98266 6.01820 6.16697 6.81410 7.41076 8.90228 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.004705 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.548509 B = 5949.315016 C = 7345.905342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.108 4.108 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.115 4.115 8 C -0.573 4.573 9 S 2.596 3.404 10 O -0.993 6.993 11 O -0.968 6.968 12 N -0.989 5.989 13 C 0.268 3.732 14 C -0.530 4.530 15 H 0.051 0.949 16 C 0.012 3.988 17 N -0.926 5.926 18 Si 0.947 3.053 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.270 1.270 22 C 0.161 3.839 23 C -0.196 4.196 24 C -0.174 4.174 25 C -0.159 4.159 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.017 0.983 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 17.119 8.275 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.127 4.127 5 C -0.152 4.152 6 C -0.147 4.147 7 C -0.117 4.117 8 C -0.702 4.702 9 S 2.693 3.307 10 O -0.983 6.983 11 O -0.958 6.958 12 N -0.826 5.826 13 C 0.145 3.855 14 C -0.569 4.569 15 H 0.070 0.930 16 C -0.186 4.186 17 N -0.567 5.567 18 Si 0.772 3.228 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.195 1.195 22 C 0.036 3.964 23 C -0.216 4.216 24 C -0.211 4.211 25 C -0.196 4.196 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.165 0.835 32 H 0.142 0.858 33 H 0.185 0.815 34 H 0.165 0.835 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.349 17.311 7.503 19.610 hybrid contribution 0.605 -1.257 -0.451 1.466 sum -4.744 16.054 7.051 18.165 Atomic orbital electron populations 1.21108 0.89640 1.04404 1.03827 1.20201 0.97600 0.92478 0.98154 1.21454 0.94826 0.97889 1.00284 1.21652 0.94486 0.99016 0.97505 1.21484 1.01441 0.91947 1.00279 1.21438 0.93600 1.00063 0.99563 1.19054 0.93967 0.92304 1.06392 1.29584 1.11360 1.04513 1.24741 1.05359 0.73488 0.73248 0.78570 1.93544 1.48610 1.82340 1.73819 1.93489 1.62863 1.66173 1.73276 1.57367 1.14755 1.21271 1.89168 1.18676 0.90384 0.80350 0.96136 1.21836 1.34438 1.05368 0.95265 0.93045 1.25635 0.95134 0.97570 1.00299 1.69996 1.37715 1.17395 1.31546 0.85678 0.77912 0.78546 0.80618 1.19880 1.20660 1.19515 1.20880 0.77810 1.02819 0.94922 1.22926 0.94707 1.04161 0.99838 1.22996 1.04095 0.93370 1.00608 1.23005 0.93145 0.99663 1.03800 0.88575 0.89442 0.91702 0.82681 0.82428 0.83466 0.85828 0.81529 0.83461 0.96531 0.94931 0.92568 0.88618 0.89322 0.89847 0.87609 0.90130 0.88871 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.19 71.24 0.65 -2.02 16 2 C -0.08 -2.02 5.88 -19.87 -0.12 -2.14 16 3 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 4 C -0.11 -2.05 10.05 22.27 0.22 -1.82 16 5 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 6 C -0.13 -3.60 9.70 22.27 0.22 -3.39 16 7 C -0.12 -3.29 5.14 -19.87 -0.10 -3.39 16 8 C -0.57 -16.34 5.57 71.24 0.40 -15.95 16 9 S 2.60 102.14 5.28 -56.49 -0.30 101.85 16 10 O -0.99 -49.88 16.98 -127.65 -2.17 -52.05 16 11 O -0.97 -38.03 15.34 -127.65 -1.96 -39.99 16 12 N -0.99 -40.30 2.73 -519.85 -1.42 -41.72 16 13 C 0.27 13.50 5.03 85.63 0.43 13.94 16 14 C -0.53 -30.23 8.70 25.60 0.22 -30.00 16 15 H 0.05 3.00 6.16 -2.91 -0.02 2.99 16 16 C 0.01 0.71 5.46 84.65 0.46 1.17 16 17 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 18 Si 0.95 45.78 29.54 68.60 2.03 47.80 16 19 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.16 5.36 5.56 86.38 0.48 5.84 16 23 C -0.20 -7.03 5.90 -10.79 -0.06 -7.10 16 24 C -0.17 -5.26 10.18 30.60 0.31 -4.95 16 25 C -0.16 -4.28 10.25 30.60 0.31 -3.97 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.06 1.48 4.95 -2.39 -0.01 1.47 16 29 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.17 3.58 6.70 -2.39 -0.02 3.56 16 34 H 0.15 3.98 8.08 -2.39 -0.02 3.96 16 35 H 0.02 0.90 7.61 -2.39 -0.02 0.88 16 36 H 0.03 1.65 8.00 -2.39 -0.02 1.63 16 37 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.10 2.51 7.34 -2.39 -0.02 2.49 16 39 H 0.09 2.68 8.00 -2.39 -0.02 2.67 16 40 H 0.08 3.72 5.77 -2.39 -0.01 3.70 16 41 H 0.11 2.90 8.03 -2.39 -0.02 2.88 16 42 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -75.20 372.67 1.33 -73.88 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.99 Total: 23.50 kcal Atomic # 6 Polarization: -62.75 SS G_CDS: 3.87 Total: -58.88 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -1.13 Total: -96.11 kcal Atomic # 8 Polarization: -87.92 SS G_CDS: -4.13 Total: -92.04 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 102.14 SS G_CDS: -0.30 Total: 101.85 kcal Total: -75.20 1.33 -73.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348101304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.328 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds