Wall clock time and date at job start Tue Mar 31 2020 14:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 119.99456 * 2 1 4 4 C 1.38215 * 119.99645 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00291 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99706 * 359.77586 * 5 4 3 7 7 C 1.38211 * 120.00116 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00034 * 359.97438 * 7 2 1 9 9 N 1.46499 * 109.47302 * 183.38960 * 8 7 2 10 10 C 1.46501 * 119.99811 * 274.21456 * 9 8 7 11 11 C 1.53000 * 117.49863 * 11.06497 * 10 9 8 12 12 C 1.53005 * 117.49458 * 302.40384 * 10 9 8 13 13 S 1.65595 * 120.00146 * 94.20481 * 9 8 7 14 14 O 1.42101 * 104.27961 * 333.93449 * 13 9 8 15 15 O 1.42098 * 104.28029 * 206.07503 * 13 9 8 16 16 C 1.81403 * 104.44824 * 90.00258 * 13 9 8 17 17 C 1.53003 * 109.47129 * 179.97438 * 16 13 9 18 18 C 1.50700 * 109.47106 * 180.02562 * 17 16 13 19 19 H 1.07999 * 119.99750 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00384 * 179.97438 * 18 17 16 21 21 N 1.31524 * 119.99788 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00476 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47125 * 89.99859 * 22 20 18 24 24 H 1.48500 * 109.47468 * 210.00000 * 22 20 18 25 25 H 1.48497 * 109.47038 * 330.00482 * 22 20 18 26 26 H 1.08996 * 109.47386 * 263.91995 * 1 2 3 27 27 H 1.08998 * 109.47357 * 23.92075 * 1 2 3 28 28 H 1.09005 * 109.46746 * 143.92464 * 1 2 3 29 29 H 1.07994 * 120.00418 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.00279 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.00443 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.00225 * 180.25815 * 6 5 4 33 33 H 1.09001 * 109.47058 * 63.38314 * 8 7 2 34 34 H 1.09003 * 109.46671 * 303.38481 * 8 7 2 35 35 H 1.08997 * 115.54846 * 156.74040 * 10 9 8 36 36 H 1.08995 * 117.49819 * 359.97438 * 11 10 9 37 37 H 1.08996 * 117.49987 * 145.03109 * 11 10 9 38 38 H 1.08998 * 117.49795 * 214.98255 * 12 10 9 39 39 H 1.09005 * 117.49662 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.46798 * 60.00073 * 16 13 9 41 41 H 1.08996 * 109.47007 * 300.00022 * 16 13 9 42 42 H 1.08996 * 109.47274 * 299.99956 * 17 16 13 43 43 H 1.08998 * 109.47140 * 60.00382 * 17 16 13 44 44 H 0.96991 * 119.99941 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0047 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 7 2.3946 -3.6144 0.0805 10 6 3.0046 -4.1470 -1.1403 11 6 2.8181 -3.3463 -2.4306 12 6 2.0653 -4.6643 -2.2317 13 16 2.7789 -4.2695 1.5520 14 8 2.5559 -3.2125 2.4752 15 8 4.0769 -4.8163 1.3640 16 6 1.5598 -5.5913 1.7913 17 6 1.8130 -6.2818 3.1330 18 6 0.8006 -7.3803 3.3315 19 1 0.0518 -7.5675 2.5761 20 6 0.8309 -8.1471 4.4770 21 7 1.7431 -7.9194 5.3967 22 14 -0.4244 -9.5082 4.7234 23 1 0.1032 -10.7763 4.1585 24 1 -0.6859 -9.6838 6.1746 25 1 -1.6883 -9.1469 4.0327 26 1 -0.3634 -0.1088 1.0218 27 1 -0.3634 0.9394 -0.4167 28 1 -0.3633 -0.8307 -0.6052 29 1 1.6582 2.1326 -0.0004 30 1 4.1203 2.1327 0.0001 31 1 5.3517 0.0001 0.0005 32 1 4.1207 -2.1322 0.0089 33 1 0.8639 -2.5863 -0.9191 34 1 0.7736 -2.5341 0.8579 35 1 3.9524 -4.6678 -1.0036 36 1 2.2412 -2.4235 -2.3713 37 1 3.6430 -3.3406 -3.1431 38 1 2.3953 -5.5250 -2.8133 39 1 0.9935 -4.6086 -2.0411 40 1 1.6507 -6.3196 0.9854 41 1 0.5564 -5.1656 1.7850 42 1 2.8163 -6.7075 3.1389 43 1 1.7224 -5.5538 3.9391 44 1 1.7642 -8.4585 6.2027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348105425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:46 Heat of formation + Delta-G solvation = -24.571356 kcal Electronic energy + Delta-G solvation = -25807.057237 eV Core-core repulsion = 22238.224269 eV Total energy + Delta-G solvation = -3568.832968 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86607 -37.97673 -36.66071 -35.46121 -33.96139 -33.87454 -32.81768 -31.17739 -30.63961 -27.25030 -26.11059 -25.60740 -22.57166 -22.23254 -21.84060 -21.15186 -20.68607 -18.59398 -17.79317 -16.79430 -16.46940 -16.41543 -15.41398 -15.25066 -14.93230 -14.75375 -14.62934 -14.51421 -14.07248 -13.57995 -13.41563 -13.07852 -12.75830 -12.60921 -12.51248 -12.39036 -11.95945 -11.79367 -11.69598 -11.63997 -11.61244 -11.52969 -11.33480 -11.09087 -11.03782 -10.97262 -10.89109 -10.44076 -10.40237 -10.38122 -9.75746 -9.29612 -8.75777 -8.68118 -8.55673 -8.51217 -6.13224 -4.18988 0.69434 1.34830 1.42923 2.89054 3.25430 3.31663 3.34346 3.73569 3.76041 4.26907 4.37285 4.42541 4.66340 4.70984 4.80102 4.84001 4.90094 4.93436 4.99336 5.08114 5.20779 5.21884 5.35079 5.40390 5.50995 5.56200 5.57643 5.62861 5.68962 5.73421 5.75317 5.83343 6.01750 6.04225 6.07736 6.20541 6.46723 6.47879 6.52096 6.54908 6.76182 7.02977 7.28408 7.34305 7.79648 8.16326 8.84366 9.45820 10.97843 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.003487 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.856236 B = 8027.955086 C = 8322.153808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 C -0.122 4.122 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.096 4.096 7 C -0.092 4.092 8 C 0.163 3.837 9 N -0.977 5.977 10 C 0.080 3.920 11 C -0.179 4.179 12 C -0.196 4.196 13 S 2.587 3.413 14 O -0.954 6.954 15 O -0.962 6.962 16 C -0.588 4.588 17 C 0.028 3.972 18 C -0.520 4.520 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 15.052 -16.572 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.143 4.143 6 C -0.114 4.114 7 C -0.094 4.094 8 C 0.037 3.963 9 N -0.809 5.809 10 C -0.027 4.027 11 C -0.218 4.218 12 C -0.235 4.235 13 S 2.686 3.314 14 O -0.944 6.944 15 O -0.953 6.953 16 C -0.721 4.721 17 C -0.011 4.011 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.161 0.839 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.383 15.318 -15.829 22.030 hybrid contribution -1.108 -1.047 -0.018 1.524 sum -0.725 14.271 -15.847 21.338 Atomic orbital electron populations 1.20839 0.91292 1.02612 1.02761 1.19643 0.95895 0.92445 1.00374 1.20938 0.94234 0.97133 1.01676 1.21081 0.94332 0.97848 1.00766 1.21128 0.99824 0.92529 1.00844 1.21029 0.93742 0.98269 0.98352 1.20070 0.94350 0.94449 1.00546 1.20111 0.90332 0.82362 1.03467 1.57474 1.57075 1.44000 1.22301 1.21553 0.98249 1.02051 0.80816 1.23284 1.03572 0.96011 0.98903 1.23448 0.99137 0.97791 1.03149 1.05936 0.76852 0.76367 0.72237 1.93573 1.86835 1.53342 1.60688 1.93523 1.36494 1.80836 1.84421 1.30485 1.15332 1.15803 1.10511 1.18968 0.99119 0.96285 0.86726 1.20992 1.14652 1.15854 1.04442 0.92026 1.25072 0.95982 0.97641 0.95793 1.69957 1.33938 1.40009 1.08927 0.86466 0.81397 0.81933 0.77471 1.20442 1.20983 1.19747 0.90687 0.91632 0.91457 0.86296 0.86406 0.86285 0.86039 0.89131 0.88542 0.83859 0.88209 0.88231 0.88015 0.88377 0.86068 0.86334 0.94890 0.94886 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.45 36.01 0.34 -0.69 16 2 C -0.08 -0.95 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.32 9.68 -39.58 -0.38 -1.70 16 4 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 5 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 6 C -0.10 -1.32 8.85 -39.58 -0.35 -1.67 16 7 C -0.09 -1.20 5.16 -104.62 -0.54 -1.74 16 8 C 0.16 1.96 3.65 -5.19 -0.02 1.94 16 9 N -0.98 -13.33 1.84 -108.57 -0.20 -13.53 16 10 C 0.08 0.94 5.36 -67.93 -0.36 0.58 16 11 C -0.18 -1.66 9.33 -26.69 -0.25 -1.91 16 12 C -0.20 -1.84 10.07 -26.69 -0.27 -2.10 16 13 S 2.59 47.29 5.32 -107.50 -0.57 46.71 16 14 O -0.95 -19.96 17.00 -57.54 -0.98 -20.94 16 15 O -0.96 -19.89 16.74 -57.54 -0.96 -20.86 16 16 C -0.59 -11.34 6.12 37.16 0.23 -11.11 16 17 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 18 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 22 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 28 H 0.07 0.51 6.98 -51.93 -0.36 0.14 16 29 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.77 6.21 -52.49 -0.33 1.44 16 33 H 0.09 0.84 6.02 -51.93 -0.31 0.52 16 34 H 0.10 1.16 7.56 -51.93 -0.39 0.77 16 35 H 0.14 1.75 7.25 -51.93 -0.38 1.38 16 36 H 0.10 0.94 6.16 -51.93 -0.32 0.62 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 0.88 7.92 -51.93 -0.41 0.47 16 40 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 41 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -34.36 371.60 -11.65 -46.01 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.69 Total: 2.88 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: -3.57 Total: -36.24 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.54 Total: -39.30 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.94 Total: -41.79 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.57 Total: 46.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.36 -11.65 -46.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348105425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.437 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds