Wall clock time and date at job start Tue Mar 31 2020 14:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 119.99456 * 2 1 4 4 C 1.38215 * 119.99645 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00291 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99706 * 359.77586 * 5 4 3 7 7 C 1.38211 * 120.00116 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00034 * 359.97438 * 7 2 1 9 9 N 1.46499 * 109.47302 * 183.38960 * 8 7 2 10 10 C 1.46501 * 119.99811 * 274.21456 * 9 8 7 11 11 C 1.53000 * 117.49863 * 11.06497 * 10 9 8 12 12 C 1.53005 * 117.49458 * 302.40384 * 10 9 8 13 13 S 1.65595 * 120.00146 * 94.20481 * 9 8 7 14 14 O 1.42101 * 104.27961 * 333.93449 * 13 9 8 15 15 O 1.42098 * 104.28029 * 206.07503 * 13 9 8 16 16 C 1.81403 * 104.44824 * 90.00258 * 13 9 8 17 17 C 1.53003 * 109.47129 * 179.97438 * 16 13 9 18 18 C 1.50700 * 109.47106 * 180.02562 * 17 16 13 19 19 H 1.07999 * 119.99750 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00384 * 179.97438 * 18 17 16 21 21 N 1.31524 * 119.99788 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00476 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47125 * 89.99859 * 22 20 18 24 24 H 1.48500 * 109.47468 * 210.00000 * 22 20 18 25 25 H 1.48497 * 109.47038 * 330.00482 * 22 20 18 26 26 H 1.08996 * 109.47386 * 263.91995 * 1 2 3 27 27 H 1.08998 * 109.47357 * 23.92075 * 1 2 3 28 28 H 1.09005 * 109.46746 * 143.92464 * 1 2 3 29 29 H 1.07994 * 120.00418 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.00279 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.00443 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.00225 * 180.25815 * 6 5 4 33 33 H 1.09001 * 109.47058 * 63.38314 * 8 7 2 34 34 H 1.09003 * 109.46671 * 303.38481 * 8 7 2 35 35 H 1.08997 * 115.54846 * 156.74040 * 10 9 8 36 36 H 1.08995 * 117.49819 * 359.97438 * 11 10 9 37 37 H 1.08996 * 117.49987 * 145.03109 * 11 10 9 38 38 H 1.08998 * 117.49795 * 214.98255 * 12 10 9 39 39 H 1.09005 * 117.49662 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.46798 * 60.00073 * 16 13 9 41 41 H 1.08996 * 109.47007 * 300.00022 * 16 13 9 42 42 H 1.08996 * 109.47274 * 299.99956 * 17 16 13 43 43 H 1.08998 * 109.47140 * 60.00382 * 17 16 13 44 44 H 0.96991 * 119.99941 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0047 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 7 2.3946 -3.6144 0.0805 10 6 3.0046 -4.1470 -1.1403 11 6 2.8181 -3.3463 -2.4306 12 6 2.0653 -4.6643 -2.2317 13 16 2.7789 -4.2695 1.5520 14 8 2.5559 -3.2125 2.4752 15 8 4.0769 -4.8163 1.3640 16 6 1.5598 -5.5913 1.7913 17 6 1.8130 -6.2818 3.1330 18 6 0.8006 -7.3803 3.3315 19 1 0.0518 -7.5675 2.5761 20 6 0.8309 -8.1471 4.4770 21 7 1.7431 -7.9194 5.3967 22 14 -0.4244 -9.5082 4.7234 23 1 0.1032 -10.7763 4.1585 24 1 -0.6859 -9.6838 6.1746 25 1 -1.6883 -9.1469 4.0327 26 1 -0.3634 -0.1088 1.0218 27 1 -0.3634 0.9394 -0.4167 28 1 -0.3633 -0.8307 -0.6052 29 1 1.6582 2.1326 -0.0004 30 1 4.1203 2.1327 0.0001 31 1 5.3517 0.0001 0.0005 32 1 4.1207 -2.1322 0.0089 33 1 0.8639 -2.5863 -0.9191 34 1 0.7736 -2.5341 0.8579 35 1 3.9524 -4.6678 -1.0036 36 1 2.2412 -2.4235 -2.3713 37 1 3.6430 -3.3406 -3.1431 38 1 2.3953 -5.5250 -2.8133 39 1 0.9935 -4.6086 -2.0411 40 1 1.6507 -6.3196 0.9854 41 1 0.5564 -5.1656 1.7850 42 1 2.8163 -6.7075 3.1389 43 1 1.7224 -5.5538 3.9391 44 1 1.7642 -8.4585 6.2027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348105425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:45 Heat of formation + Delta-G solvation = -45.294471 kcal Electronic energy + Delta-G solvation = -25807.955859 eV Core-core repulsion = 22238.224269 eV Total energy + Delta-G solvation = -3569.731589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75370 -38.87123 -38.22090 -37.04727 -35.91918 -34.84509 -33.65130 -33.14973 -31.59465 -28.07182 -27.60387 -26.98932 -23.76975 -23.26471 -23.02412 -22.24267 -21.67383 -19.80273 -19.26850 -18.47210 -17.70097 -17.50817 -16.84887 -16.57893 -16.52860 -15.91010 -15.65804 -15.54025 -15.15697 -14.88485 -14.55290 -14.42743 -13.90834 -13.75887 -13.72755 -13.43148 -13.23359 -13.16794 -13.04022 -12.94637 -12.92895 -12.80264 -12.62486 -12.49269 -12.27971 -12.23961 -12.12938 -11.88602 -11.76975 -11.71806 -11.29158 -11.10144 -10.66034 -9.75854 -9.64069 -9.42408 -8.27040 -6.41739 -0.78447 0.46963 0.52652 1.40595 1.42705 1.53864 1.62403 2.37483 2.77795 2.86604 2.96277 3.06173 3.11875 3.64130 3.84332 3.86146 3.99223 4.04442 4.06429 4.09929 4.15516 4.19872 4.23512 4.42071 4.51503 4.59246 4.69783 4.72185 4.85876 4.89578 4.90474 4.99976 5.06606 5.19267 5.21485 5.23393 5.25475 5.31751 5.38138 5.54384 5.64301 5.66038 5.66667 5.82537 6.03931 6.17373 6.71800 7.28720 8.85390 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.003487 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.856236 B = 8027.955086 C = 8322.153808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.142 4.142 6 C -0.122 4.122 7 C -0.108 4.108 8 C 0.156 3.844 9 N -0.963 5.963 10 C 0.046 3.954 11 C -0.160 4.160 12 C -0.179 4.179 13 S 2.608 3.392 14 O -0.986 6.986 15 O -0.994 6.994 16 C -0.586 4.586 17 C 0.021 3.979 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.256 1.256 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.003 0.997 43 H 0.005 0.995 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 15.738 -18.952 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.141 4.141 7 C -0.110 4.110 8 C 0.032 3.968 9 N -0.797 5.797 10 C -0.060 4.060 11 C -0.199 4.199 12 C -0.218 4.218 13 S 2.707 3.293 14 O -0.976 6.976 15 O -0.984 6.984 16 C -0.718 4.718 17 C -0.018 4.018 18 C -0.577 4.577 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.799 3.201 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.180 1.180 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.022 0.978 43 H 0.023 0.977 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.988 15.998 -18.217 24.326 hybrid contribution -0.311 -1.149 0.654 1.358 sum -2.299 14.849 -17.563 23.114 Atomic orbital electron populations 1.20911 0.89296 1.04332 1.02979 1.20008 0.97472 0.92078 0.99567 1.21338 0.94363 0.98094 1.00555 1.21409 0.94855 0.98242 0.99834 1.21353 1.00550 0.92806 1.01298 1.21069 0.94539 0.98181 1.00286 1.20226 0.94119 0.95407 1.01236 1.20399 0.89995 0.81342 1.05062 1.56928 1.57585 1.43940 1.21238 1.21713 0.98910 1.04590 0.80803 1.23340 1.03743 0.96125 0.96690 1.23564 0.99242 0.98262 1.00775 1.04951 0.75899 0.75543 0.72899 1.93521 1.87043 1.54118 1.62907 1.93471 1.38245 1.81424 1.85250 1.30379 1.17289 1.16662 1.07443 1.18817 0.97465 0.95954 0.89537 1.21501 1.15128 1.16195 1.04916 0.90460 1.26148 0.98153 1.00511 0.95469 1.70111 1.36140 1.41548 1.09669 0.85290 0.78970 0.78402 0.77473 1.19542 1.20827 1.17962 0.91045 0.89701 0.90109 0.83673 0.84004 0.85477 0.87801 0.85717 0.88703 0.85245 0.87851 0.86956 0.86698 0.87305 0.84007 0.83947 0.97819 0.97698 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.45 71.24 0.67 -1.07 16 2 C -0.09 -1.91 5.88 -19.87 -0.12 -2.02 16 3 C -0.13 -2.43 9.68 22.27 0.22 -2.22 16 4 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 5 C -0.14 -3.48 10.05 22.27 0.22 -3.26 16 6 C -0.12 -3.42 8.85 22.27 0.20 -3.22 16 7 C -0.11 -2.70 5.16 -19.87 -0.10 -2.80 16 8 C 0.16 3.54 3.65 85.63 0.31 3.85 16 9 N -0.96 -25.83 1.84 -497.40 -0.92 -26.75 16 10 C 0.05 1.04 5.36 44.99 0.24 1.28 16 11 C -0.16 -2.61 9.33 30.62 0.29 -2.33 16 12 C -0.18 -2.86 10.07 30.62 0.31 -2.55 16 13 S 2.61 98.38 5.32 -56.49 -0.30 98.08 16 14 O -0.99 -42.91 17.00 -127.65 -2.17 -45.08 16 15 O -0.99 -43.19 16.74 -127.65 -2.14 -45.33 16 16 C -0.59 -22.72 6.12 71.98 0.44 -22.28 16 17 C 0.02 1.13 4.98 29.85 0.15 1.28 16 18 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 19 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 22 Si 0.98 43.24 29.54 68.60 2.03 45.26 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 0.91 8.04 -2.39 -0.02 0.89 16 28 H 0.08 0.95 6.98 -2.38 -0.02 0.93 16 29 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.10 3.18 6.21 -2.91 -0.02 3.16 16 33 H 0.13 1.92 6.02 -2.39 -0.01 1.90 16 34 H 0.09 2.17 7.56 -2.39 -0.02 2.16 16 35 H 0.13 3.25 7.25 -2.39 -0.02 3.23 16 36 H 0.10 1.65 6.16 -2.39 -0.01 1.64 16 37 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 1.54 7.92 -2.38 -0.02 1.52 16 40 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 41 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -77.22 371.60 1.52 -75.71 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.98 Total: 22.51 kcal Atomic # 6 Polarization: -71.04 SS G_CDS: 3.75 Total: -67.30 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -0.63 Total: -83.85 kcal Atomic # 8 Polarization: -86.10 SS G_CDS: -4.31 Total: -90.41 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 98.38 SS G_CDS: -0.30 Total: 98.08 kcal Total: -77.22 1.52 -75.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348105425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.412 kcal (2) G-P(sol) polarization free energy of solvation -77.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds