Wall clock time and date at job start Tue Mar 31 2020 13:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.24803 * 2 1 4 4 S 1.65599 * 120.00051 * 37.28875 * 3 2 1 5 5 O 1.42103 * 104.27517 * 304.20858 * 4 3 2 6 6 O 1.42092 * 104.27970 * 176.35073 * 4 3 2 7 7 C 1.81402 * 104.44939 * 60.27940 * 4 3 2 8 8 C 1.53003 * 109.47227 * 172.67178 * 7 4 3 9 9 C 1.50696 * 109.47309 * 179.97438 * 8 7 4 10 10 H 1.07999 * 120.00212 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00233 * 180.02562 * 9 8 7 12 12 N 1.31503 * 120.00197 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99579 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47231 * 269.99975 * 13 11 9 15 15 H 1.48499 * 109.46818 * 150.00097 * 13 11 9 16 16 H 1.48497 * 109.47122 * 30.00341 * 13 11 9 17 17 C 1.52729 * 109.22452 * 119.44946 * 2 1 3 18 18 C 1.53334 * 108.39117 * 171.29805 * 17 2 1 19 19 C 1.52739 * 108.36376 * 290.08809 * 18 17 2 20 20 C 1.50635 * 110.57816 * 51.11619 * 19 18 17 21 21 C 1.38902 * 117.74401 * 162.47246 * 20 19 18 22 22 C 1.37940 * 120.54674 * 179.66877 * 21 20 19 23 23 C 1.38263 * 119.76711 * 0.02562 * 22 21 20 24 24 C 1.37935 * 119.77121 * 0.10858 * 23 22 21 25 25 C 1.37662 * 122.56499 * 342.35740 * 20 19 18 26 26 H 1.08999 * 109.47271 * 53.00386 * 1 2 3 27 27 H 1.09008 * 109.46935 * 173.00458 * 1 2 3 28 28 H 1.09000 * 109.46967 * 293.00381 * 1 2 3 29 29 H 0.97004 * 120.00308 * 217.27830 * 3 2 1 30 30 H 1.09000 * 109.47198 * 52.67492 * 7 4 3 31 31 H 1.09004 * 109.47215 * 292.66908 * 7 4 3 32 32 H 1.08997 * 109.47192 * 59.99748 * 8 7 4 33 33 H 1.09005 * 109.46889 * 300.00529 * 8 7 4 34 34 H 0.97010 * 120.00253 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.68136 * 291.02281 * 17 2 1 36 36 H 1.09002 * 109.68227 * 51.56953 * 17 2 1 37 37 H 1.09000 * 109.68328 * 170.37265 * 18 17 2 38 38 H 1.08997 * 109.71768 * 49.82643 * 18 17 2 39 39 H 1.09000 * 109.25707 * 290.82771 * 19 18 17 40 40 H 1.09002 * 109.25118 * 171.39713 * 19 18 17 41 41 H 1.08006 * 119.73194 * 359.68665 * 21 20 19 42 42 H 1.07992 * 120.11799 * 180.02562 * 22 21 20 43 43 H 1.07993 * 120.11498 * 180.12867 * 23 22 21 44 44 H 1.08000 * 119.72645 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0129 1.3831 0.0000 4 16 1.2087 2.5409 0.8688 5 8 -0.1247 2.4819 0.3811 6 8 1.9970 3.7119 0.7062 7 6 1.2857 1.9549 2.5839 8 6 0.7320 3.0337 3.5169 9 6 0.7954 2.5467 4.9415 10 1 1.1914 1.5659 5.1598 11 6 0.3478 3.3531 5.9664 12 7 0.4036 2.9283 7.2097 13 14 -0.3366 5.0498 5.5889 14 1 0.7646 6.0457 5.6192 15 1 -1.3572 5.4093 6.6059 16 1 -0.9612 5.0431 4.2417 17 6 2.0329 -0.7090 1.2558 18 6 3.5502 -0.8925 1.1329 19 6 3.8230 -1.9315 0.0471 20 6 3.0823 -1.5828 -1.2174 21 6 3.4952 -2.1893 -2.3968 22 6 2.8535 -1.9170 -3.5871 23 6 1.7907 -1.0329 -3.6074 24 6 1.3810 -0.4275 -2.4377 25 6 2.0267 -0.6994 -1.2381 26 1 -0.3634 0.6184 -0.8208 27 1 -0.3633 -1.0201 -0.1252 28 1 -0.3633 0.4016 0.9460 29 1 2.8039 1.6207 -0.5088 30 1 2.3213 1.7420 2.8489 31 1 0.6908 1.0471 2.6847 32 1 -0.3036 3.2467 3.2518 33 1 1.3268 3.9416 3.4159 34 1 0.0890 3.4958 7.9308 35 1 1.8061 -0.1048 2.1342 36 1 1.5514 -1.6828 1.3453 37 1 3.9563 -1.2392 2.0832 38 1 4.0142 0.0551 0.8593 39 1 3.4964 -2.9109 0.3966 40 1 4.8927 -1.9627 -0.1599 41 1 4.3255 -2.8799 -2.3818 42 1 3.1801 -2.3928 -4.4999 43 1 1.2829 -0.8173 -4.5358 44 1 0.5510 0.2633 -2.4544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348115248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:51 Heat of formation + Delta-G solvation = -56.157576 kcal Electronic energy + Delta-G solvation = -26291.360643 eV Core-core repulsion = 22721.157994 eV Total energy + Delta-G solvation = -3570.202649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67293 -37.40928 -36.59950 -35.56951 -34.53942 -33.99983 -31.58349 -31.25426 -30.39539 -29.34789 -26.67118 -26.03651 -23.30479 -22.98595 -21.50202 -21.10759 -19.64859 -18.76473 -17.70877 -17.21900 -16.50255 -16.03387 -15.86943 -15.41456 -15.31065 -14.88408 -14.39190 -14.25610 -13.90499 -13.65995 -13.60892 -13.25927 -12.97081 -12.76935 -12.73417 -12.44956 -12.07761 -11.87104 -11.85090 -11.71738 -11.63066 -11.50658 -11.25628 -11.20851 -11.09085 -10.95317 -10.64023 -10.49180 -10.23232 -10.13067 -9.74961 -9.46610 -9.22362 -8.95381 -8.80202 -8.66919 -6.17326 -4.18479 0.64240 1.17467 1.20876 3.02472 3.26273 3.33614 3.37660 3.62040 4.11941 4.30393 4.35291 4.42909 4.62735 4.69631 4.76871 4.80048 4.92512 5.00272 5.04431 5.14733 5.20646 5.32773 5.34961 5.45792 5.48056 5.54104 5.65057 5.72057 5.76324 5.78103 5.88513 5.89796 6.04831 6.04965 6.24478 6.28457 6.31530 6.34576 6.42712 6.52301 6.80896 6.82933 6.92175 7.08793 7.54012 8.35574 8.83753 9.42583 10.94984 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.003727 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.134205 B = 7511.252456 C = 8155.852936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.224 3.776 3 N -1.112 6.112 4 S 2.589 3.411 5 O -0.964 6.964 6 O -0.969 6.969 7 C -0.589 4.589 8 C -0.006 4.006 9 C -0.518 4.518 10 H 0.078 0.922 11 C 0.072 3.928 12 N -0.895 5.895 13 Si 0.869 3.131 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.262 1.262 17 C -0.156 4.156 18 C -0.120 4.120 19 C -0.083 4.083 20 C -0.060 4.060 21 C -0.128 4.128 22 C -0.115 4.115 23 C -0.130 4.130 24 C -0.100 4.100 25 C -0.076 4.076 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.413 0.587 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.721 -11.946 -19.357 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.135 3.865 3 N -0.869 5.869 4 S 2.686 3.314 5 O -0.954 6.954 6 O -0.959 6.959 7 C -0.721 4.721 8 C -0.045 4.045 9 C -0.557 4.557 10 H 0.096 0.904 11 C -0.131 4.131 12 N -0.533 5.533 13 Si 0.695 3.305 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.187 1.187 17 C -0.195 4.195 18 C -0.157 4.157 19 C -0.120 4.120 20 C -0.061 4.061 21 C -0.146 4.146 22 C -0.133 4.133 23 C -0.148 4.148 24 C -0.118 4.118 25 C -0.077 4.077 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.247 0.753 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.107 -11.142 -19.459 22.998 hybrid contribution 0.257 0.419 0.098 0.501 sum 5.364 -10.723 -19.361 22.773 Atomic orbital electron populations 1.22676 0.92248 1.03309 1.05220 1.18884 0.94136 0.80676 0.92762 1.55904 1.44569 1.20543 1.65864 1.05617 0.74292 0.73438 0.78017 1.93583 1.37254 1.86205 1.78320 1.93550 1.70431 1.45773 1.86164 1.30559 1.10780 1.11344 1.19443 1.19408 0.96305 0.92436 0.96381 1.20837 1.43038 1.04131 0.87735 0.90365 1.24975 0.94954 0.98215 0.94915 1.69876 1.46865 1.37506 0.99089 0.86938 0.79714 0.84902 0.78968 1.19673 1.20781 1.18670 1.22526 0.96758 1.02248 0.97937 1.21529 0.96059 0.99483 0.98656 1.20541 0.99447 0.99658 0.92359 1.19696 0.95120 0.95995 0.95299 1.21137 1.00596 1.00642 0.92261 1.21093 0.96176 0.98180 0.97832 1.21089 0.97690 0.97885 0.98142 1.21346 0.99562 0.99018 0.91924 1.19459 0.96168 0.97799 0.94307 0.89566 0.91062 0.90749 0.75302 0.85309 0.85210 0.95157 0.95228 0.92386 0.89081 0.90050 0.90786 0.91118 0.90389 0.90723 0.86211 0.86234 0.86099 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 6.32 37.16 0.23 -1.96 16 2 C 0.22 2.61 0.67 -133.15 -0.09 2.52 16 3 N -1.11 -14.23 4.80 -0.55 0.00 -14.24 16 4 S 2.59 43.50 5.00 -107.50 -0.54 42.96 16 5 O -0.96 -17.88 14.39 -57.54 -0.83 -18.70 16 6 O -0.97 -19.27 18.08 -57.54 -1.04 -20.31 16 7 C -0.59 -10.49 4.17 37.16 0.15 -10.33 16 8 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 9 C -0.52 -14.19 9.66 -34.44 -0.33 -14.52 16 10 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 13 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 17 C -0.16 -1.70 4.77 -26.70 -0.13 -1.83 16 18 C -0.12 -1.16 5.96 -26.69 -0.16 -1.32 16 19 C -0.08 -0.71 5.67 -28.05 -0.16 -0.87 16 20 C -0.06 -0.59 5.74 -104.62 -0.60 -1.20 16 21 C -0.13 -1.13 9.61 -39.44 -0.38 -1.51 16 22 C -0.11 -0.98 10.05 -39.68 -0.40 -1.38 16 23 C -0.13 -1.20 10.05 -39.68 -0.40 -1.60 16 24 C -0.10 -1.06 9.04 -39.44 -0.36 -1.42 16 25 C -0.08 -0.83 4.84 -104.62 -0.51 -1.33 16 26 H 0.09 1.13 5.81 -51.93 -0.30 0.83 16 27 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.07 1.00 5.68 -51.93 -0.29 0.71 16 29 H 0.41 4.72 8.66 -34.47 -0.30 4.42 16 30 H 0.13 2.07 7.84 -51.92 -0.41 1.66 16 31 H 0.13 2.08 5.75 -51.92 -0.30 1.79 16 32 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 33 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.09 1.08 4.00 -51.93 -0.21 0.87 16 36 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.70 7.59 -51.93 -0.39 0.31 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 41 H 0.12 0.82 8.05 -52.48 -0.42 0.40 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.13 1.34 6.48 -52.49 -0.34 1.00 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -33.55 348.19 -10.66 -44.21 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.27 Total: 5.19 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: -3.33 Total: -35.04 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.77 Total: -40.25 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.87 Total: -39.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 43.50 SS G_CDS: -0.54 Total: 42.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.55 -10.66 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348115248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.949 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds