Wall clock time and date at job start Tue Mar 31 2020 13:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.24803 * 2 1 4 4 S 1.65599 * 120.00051 * 37.28875 * 3 2 1 5 5 O 1.42103 * 104.27517 * 304.20858 * 4 3 2 6 6 O 1.42092 * 104.27970 * 176.35073 * 4 3 2 7 7 C 1.81402 * 104.44939 * 60.27940 * 4 3 2 8 8 C 1.53003 * 109.47227 * 172.67178 * 7 4 3 9 9 C 1.50696 * 109.47309 * 179.97438 * 8 7 4 10 10 H 1.07999 * 120.00212 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00233 * 180.02562 * 9 8 7 12 12 N 1.31503 * 120.00197 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99579 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47231 * 269.99975 * 13 11 9 15 15 H 1.48499 * 109.46818 * 150.00097 * 13 11 9 16 16 H 1.48497 * 109.47122 * 30.00341 * 13 11 9 17 17 C 1.52729 * 109.22452 * 119.44946 * 2 1 3 18 18 C 1.53334 * 108.39117 * 171.29805 * 17 2 1 19 19 C 1.52739 * 108.36376 * 290.08809 * 18 17 2 20 20 C 1.50635 * 110.57816 * 51.11619 * 19 18 17 21 21 C 1.38902 * 117.74401 * 162.47246 * 20 19 18 22 22 C 1.37940 * 120.54674 * 179.66877 * 21 20 19 23 23 C 1.38263 * 119.76711 * 0.02562 * 22 21 20 24 24 C 1.37935 * 119.77121 * 0.10858 * 23 22 21 25 25 C 1.37662 * 122.56499 * 342.35740 * 20 19 18 26 26 H 1.08999 * 109.47271 * 53.00386 * 1 2 3 27 27 H 1.09008 * 109.46935 * 173.00458 * 1 2 3 28 28 H 1.09000 * 109.46967 * 293.00381 * 1 2 3 29 29 H 0.97004 * 120.00308 * 217.27830 * 3 2 1 30 30 H 1.09000 * 109.47198 * 52.67492 * 7 4 3 31 31 H 1.09004 * 109.47215 * 292.66908 * 7 4 3 32 32 H 1.08997 * 109.47192 * 59.99748 * 8 7 4 33 33 H 1.09005 * 109.46889 * 300.00529 * 8 7 4 34 34 H 0.97010 * 120.00253 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.68136 * 291.02281 * 17 2 1 36 36 H 1.09002 * 109.68227 * 51.56953 * 17 2 1 37 37 H 1.09000 * 109.68328 * 170.37265 * 18 17 2 38 38 H 1.08997 * 109.71768 * 49.82643 * 18 17 2 39 39 H 1.09000 * 109.25707 * 290.82771 * 19 18 17 40 40 H 1.09002 * 109.25118 * 171.39713 * 19 18 17 41 41 H 1.08006 * 119.73194 * 359.68665 * 21 20 19 42 42 H 1.07992 * 120.11799 * 180.02562 * 22 21 20 43 43 H 1.07993 * 120.11498 * 180.12867 * 23 22 21 44 44 H 1.08000 * 119.72645 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0129 1.3831 0.0000 4 16 1.2087 2.5409 0.8688 5 8 -0.1247 2.4819 0.3811 6 8 1.9970 3.7119 0.7062 7 6 1.2857 1.9549 2.5839 8 6 0.7320 3.0337 3.5169 9 6 0.7954 2.5467 4.9415 10 1 1.1914 1.5659 5.1598 11 6 0.3478 3.3531 5.9664 12 7 0.4036 2.9283 7.2097 13 14 -0.3366 5.0498 5.5889 14 1 0.7646 6.0457 5.6192 15 1 -1.3572 5.4093 6.6059 16 1 -0.9612 5.0431 4.2417 17 6 2.0329 -0.7090 1.2558 18 6 3.5502 -0.8925 1.1329 19 6 3.8230 -1.9315 0.0471 20 6 3.0823 -1.5828 -1.2174 21 6 3.4952 -2.1893 -2.3968 22 6 2.8535 -1.9170 -3.5871 23 6 1.7907 -1.0329 -3.6074 24 6 1.3810 -0.4275 -2.4377 25 6 2.0267 -0.6994 -1.2381 26 1 -0.3634 0.6184 -0.8208 27 1 -0.3633 -1.0201 -0.1252 28 1 -0.3633 0.4016 0.9460 29 1 2.8039 1.6207 -0.5088 30 1 2.3213 1.7420 2.8489 31 1 0.6908 1.0471 2.6847 32 1 -0.3036 3.2467 3.2518 33 1 1.3268 3.9416 3.4159 34 1 0.0890 3.4958 7.9308 35 1 1.8061 -0.1048 2.1342 36 1 1.5514 -1.6828 1.3453 37 1 3.9563 -1.2392 2.0832 38 1 4.0142 0.0551 0.8593 39 1 3.4964 -2.9109 0.3966 40 1 4.8927 -1.9627 -0.1599 41 1 4.3255 -2.8799 -2.3818 42 1 3.1801 -2.3928 -4.4999 43 1 1.2829 -0.8173 -4.5358 44 1 0.5510 0.2633 -2.4544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348115248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:50 Heat of formation + Delta-G solvation = -78.097272 kcal Electronic energy + Delta-G solvation = -26292.312020 eV Core-core repulsion = 22721.157994 eV Total energy + Delta-G solvation = -3571.154026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46130 -38.45387 -37.83018 -37.02516 -35.91880 -35.33490 -33.52681 -32.16874 -31.15980 -30.22122 -27.94328 -27.44718 -24.18633 -23.80820 -22.94112 -22.16913 -20.62055 -20.01235 -19.23397 -18.70751 -17.61478 -17.16456 -16.98379 -16.44399 -16.38324 -16.31094 -15.79729 -15.24092 -15.14845 -14.83272 -14.73399 -14.35629 -14.09738 -13.89689 -13.80311 -13.60456 -13.40968 -13.19492 -13.08383 -13.04095 -12.91982 -12.69002 -12.55861 -12.35343 -12.21472 -12.08557 -11.95126 -11.79548 -11.71421 -11.54860 -11.18008 -11.06806 -10.83097 -10.39729 -9.69463 -9.49657 -8.35292 -6.40276 -0.72105 0.42030 0.51269 1.32036 1.34163 1.43608 1.81741 2.30065 2.73028 2.89468 2.98879 3.25960 3.46044 3.69482 3.84314 3.87609 3.98793 4.04955 4.09454 4.19111 4.28773 4.32254 4.50187 4.52965 4.57695 4.64667 4.71282 4.79343 4.90106 4.98443 5.01040 5.07260 5.09360 5.16669 5.18251 5.21966 5.31656 5.38536 5.46346 5.49079 5.64557 5.66516 5.77134 6.09345 6.14760 6.18595 6.65745 7.23940 8.80075 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.003727 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.134205 B = 7511.252456 C = 8155.852936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.224 3.776 3 N -1.097 6.097 4 S 2.615 3.385 5 O -0.981 6.981 6 O -0.998 6.998 7 C -0.591 4.591 8 C -0.015 4.015 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.015 3.985 12 N -0.939 5.939 13 Si 0.921 3.079 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.250 1.250 17 C -0.159 4.159 18 C -0.122 4.122 19 C -0.080 4.080 20 C -0.067 4.067 21 C -0.131 4.131 22 C -0.114 4.114 23 C -0.136 4.136 24 C -0.116 4.116 25 C -0.089 4.089 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.422 0.578 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.269 0.731 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 -12.863 -21.463 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.137 3.863 3 N -0.857 5.857 4 S 2.712 3.288 5 O -0.970 6.970 6 O -0.989 6.989 7 C -0.722 4.722 8 C -0.054 4.054 9 C -0.562 4.562 10 H 0.071 0.929 11 C -0.183 4.183 12 N -0.579 5.579 13 Si 0.744 3.256 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.174 1.174 17 C -0.198 4.198 18 C -0.160 4.160 19 C -0.116 4.116 20 C -0.068 4.068 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.154 4.154 24 C -0.135 4.135 25 C -0.091 4.091 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.258 0.742 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.948 -12.055 -21.565 25.412 hybrid contribution 0.036 0.558 0.677 0.878 sum 5.983 -11.498 -20.889 24.583 Atomic orbital electron populations 1.22707 0.93053 1.04133 1.04011 1.18973 0.93582 0.79774 0.93980 1.55544 1.44664 1.20666 1.64783 1.04630 0.73756 0.73109 0.77328 1.93566 1.38575 1.86579 1.78320 1.93505 1.71062 1.47885 1.86419 1.30563 1.11720 1.10330 1.19627 1.19363 0.96743 0.94079 0.95219 1.21150 1.41865 1.03124 0.90023 0.92887 1.25820 0.95587 1.02153 0.94779 1.69998 1.48555 1.39191 1.00143 0.86082 0.79551 0.80471 0.79477 1.18708 1.19956 1.17408 1.22547 0.98001 1.02461 0.96800 1.21560 0.94907 0.99886 0.99599 1.20553 1.00248 0.99542 0.91291 1.19895 0.94798 0.95751 0.96348 1.21435 1.01030 1.00594 0.91855 1.21432 0.95460 0.97495 0.98828 1.21336 0.98044 0.97776 0.98276 1.21416 0.99825 0.99609 0.92606 1.19378 0.97242 0.98806 0.93700 0.90507 0.89341 0.92120 0.74201 0.83833 0.83771 0.95127 0.95223 0.92170 0.90377 0.88928 0.90182 0.91577 0.89322 0.89195 0.84019 0.83830 0.84548 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.41 6.32 71.98 0.45 -3.96 16 2 C 0.22 5.01 0.67 2.74 0.00 5.01 16 3 N -1.10 -27.15 4.80 -155.64 -0.75 -27.89 16 4 S 2.62 86.67 5.00 -56.49 -0.28 86.38 16 5 O -0.98 -36.10 14.39 -127.65 -1.84 -37.94 16 6 O -1.00 -39.18 18.08 -127.65 -2.31 -41.49 16 7 C -0.59 -20.92 4.17 71.98 0.30 -20.62 16 8 C -0.02 -0.70 4.05 29.85 0.12 -0.58 16 9 C -0.52 -29.06 9.66 25.60 0.25 -28.82 16 10 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 11 C 0.02 0.87 5.47 84.66 0.46 1.34 16 12 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 13 Si 0.92 43.77 27.47 68.60 1.88 45.66 16 14 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 17 C -0.16 -3.28 4.77 30.62 0.15 -3.14 16 18 C -0.12 -2.14 5.96 30.62 0.18 -1.96 16 19 C -0.08 -1.14 5.67 29.74 0.17 -0.97 16 20 C -0.07 -1.16 5.74 -19.86 -0.11 -1.27 16 21 C -0.13 -1.90 9.61 22.36 0.21 -1.68 16 22 C -0.11 -1.60 10.05 22.20 0.22 -1.38 16 23 C -0.14 -2.23 10.05 22.20 0.22 -2.00 16 24 C -0.12 -2.31 9.04 22.36 0.20 -2.11 16 25 C -0.09 -1.81 4.84 -19.86 -0.10 -1.90 16 26 H 0.08 2.01 5.81 -2.39 -0.01 1.99 16 27 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.06 1.62 5.68 -2.39 -0.01 1.61 16 29 H 0.42 9.19 8.66 -96.74 -0.84 8.35 16 30 H 0.14 4.57 7.84 -2.39 -0.02 4.55 16 31 H 0.14 4.63 5.75 -2.39 -0.01 4.62 16 32 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 33 H 0.03 1.37 7.57 -2.38 -0.02 1.35 16 34 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 35 H 0.08 1.80 4.00 -2.39 -0.01 1.79 16 36 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.21 7.59 -2.39 -0.02 1.19 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.03 8.13 -2.39 -0.02 1.01 16 41 H 0.14 1.39 8.05 -2.91 -0.02 1.36 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.12 2.48 6.48 -2.91 -0.02 2.46 16 Total: -1.00 -71.96 348.19 -0.13 -72.09 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.12 Total: 24.21 kcal Atomic # 6 Polarization: -66.77 SS G_CDS: 2.74 Total: -64.04 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -0.45 Total: -84.88 kcal Atomic # 8 Polarization: -75.28 SS G_CDS: -4.14 Total: -79.42 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 16 Polarization: 86.67 SS G_CDS: -0.28 Total: 86.38 kcal Total: -71.96 -0.13 -72.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348115248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.012 kcal (2) G-P(sol) polarization free energy of solvation -71.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds