Wall clock time and date at job start Tue Mar 31 2020 13:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47326 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47115 * 299.99368 * 3 2 1 6 6 H 1.48504 * 109.47184 * 59.99694 * 3 2 1 7 7 C 1.39023 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99889 * 194.50711 * 7 2 1 9 9 N 1.36897 * 119.99849 * 14.50779 * 7 2 1 10 10 C 1.34780 * 120.00063 * 200.71886 * 9 7 2 11 11 O 1.21622 * 119.99764 * 354.32690 * 10 9 7 12 12 C 1.47490 * 119.99785 * 174.32346 * 10 9 7 13 13 C 1.39806 * 120.08889 * 144.71174 * 12 10 9 14 14 C 1.37676 * 119.90656 * 179.97438 * 13 12 10 15 15 C 1.39036 * 120.09108 * 0.25013 * 14 13 12 16 16 O 1.35698 * 119.90732 * 179.74583 * 15 14 13 17 17 C 1.35886 * 117.99876 * 77.15148 * 16 15 14 18 18 C 1.38754 * 120.05845 * 5.06949 * 17 16 15 19 19 C 1.38138 * 119.93917 * 179.77024 * 18 17 16 20 20 C 1.38274 * 120.06159 * 0.50484 * 19 18 17 21 21 C 1.38274 * 120.11222 * 359.74342 * 20 19 18 22 22 C 1.38140 * 120.05920 * 0.02562 * 21 20 19 23 23 C 1.39038 * 120.18419 * 359.49245 * 15 14 13 24 24 C 1.37673 * 120.09151 * 0.50844 * 23 15 14 25 25 C 1.46498 * 120.00105 * 20.72589 * 9 7 2 26 26 C 1.53000 * 117.50459 * 129.96270 * 25 9 7 27 27 C 1.53001 * 60.00209 * 252.50917 * 26 25 9 28 28 H 0.97001 * 119.99854 * 4.97487 * 1 2 3 29 29 H 1.07998 * 120.04534 * 359.94649 * 13 12 10 30 30 H 1.07994 * 119.95426 * 179.97438 * 14 13 12 31 31 H 1.08001 * 120.03216 * 0.02562 * 18 17 16 32 32 H 1.07997 * 119.96982 * 180.25143 * 19 18 17 33 33 H 1.07991 * 119.94402 * 179.72888 * 20 19 18 34 34 H 1.07995 * 119.96815 * 179.97438 * 21 20 19 35 35 H 1.07994 * 120.02687 * 179.97438 * 22 21 20 36 36 H 1.07996 * 119.95213 * 180.23659 * 23 15 14 37 37 H 1.08007 * 120.05100 * 179.77065 * 24 23 15 38 38 H 1.09006 * 115.54891 * 275.67309 * 25 9 7 39 39 H 1.09002 * 117.49169 * 359.97438 * 26 25 9 40 40 H 1.08995 * 117.50359 * 145.01968 * 26 25 9 41 41 H 1.08996 * 117.49874 * 252.50476 * 27 26 25 42 42 H 1.08997 * 117.51974 * 107.47788 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7078 1.3465 0.0006 5 1 1.8891 2.3964 -1.2126 6 1 1.8889 2.3966 1.2125 7 6 2.0089 -1.2039 0.0005 8 1 3.0631 -1.2187 0.2348 9 7 1.3572 -2.3707 -0.2959 10 6 1.8772 -3.5512 0.0949 11 8 2.9740 -3.5887 0.6192 12 6 1.1161 -4.7973 -0.1131 13 6 1.7858 -5.9832 -0.4287 14 6 1.0717 -7.1444 -0.6216 15 6 -0.3140 -7.1375 -0.5081 16 8 -1.0146 -8.2830 -0.7040 17 6 -1.0244 -9.2037 0.2953 18 6 -0.4209 -8.9161 1.5112 19 6 -0.4364 -9.8520 2.5271 20 6 -1.0435 -11.0786 2.3296 21 6 -1.6412 -11.3696 1.1172 22 6 -1.6327 -10.4354 0.0996 23 6 -0.9835 -5.9614 -0.1892 24 6 -0.2769 -4.7959 0.0053 25 6 0.0946 -2.3364 -1.0382 26 6 -0.0350 -3.2550 -2.2548 27 6 0.1204 -1.7453 -2.4492 28 1 -0.4850 0.8369 -0.0728 29 1 2.8618 -5.9884 -0.5214 30 1 1.5882 -8.0608 -0.8658 31 1 0.0570 -7.9598 1.6646 32 1 0.0296 -9.6271 3.4750 33 1 -1.0507 -11.8105 3.1236 34 1 -2.1143 -12.3285 0.9654 35 1 -2.0992 -10.6635 -0.8473 36 1 -2.0596 -5.9612 -0.0982 37 1 -0.7980 -3.8819 0.2493 38 1 -0.7992 -2.1667 -0.4378 39 1 0.8194 -3.8846 -2.5032 40 1 -1.0141 -3.6900 -2.4550 41 1 -0.7564 -1.1872 -2.7773 42 1 1.0768 -1.3818 -2.8251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354196320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:53 Heat of formation + Delta-G solvation = 36.739036 kcal Electronic energy + Delta-G solvation = -26485.174489 eV Core-core repulsion = 22783.556188 eV Total energy + Delta-G solvation = -3701.618301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88204 -39.50775 -38.20068 -36.78902 -36.10808 -33.21458 -31.41992 -31.15624 -30.81465 -30.49087 -29.33573 -25.44080 -23.79143 -22.81123 -22.51588 -22.17487 -21.51099 -21.20595 -19.37603 -18.66007 -17.23357 -16.84722 -16.49782 -15.97311 -15.81410 -15.26813 -14.80367 -14.51101 -14.32891 -14.11303 -13.97134 -13.67609 -13.57070 -13.37601 -13.05855 -12.98757 -12.58037 -12.09224 -11.98248 -11.77877 -11.71812 -11.26285 -11.15767 -11.03009 -10.83825 -10.68780 -10.53023 -10.37590 -9.97243 -9.57650 -9.14765 -8.97074 -8.74786 -8.63542 -8.44418 -8.17344 -7.84787 -6.42438 -3.96450 1.05787 1.20081 1.30580 1.59807 3.04444 3.16929 3.21315 3.27424 3.64850 3.66660 4.01812 4.25147 4.60067 4.64513 4.72964 4.79304 5.01282 5.03684 5.06511 5.12606 5.23059 5.27334 5.39383 5.46037 5.61739 5.69604 5.70943 5.82191 5.86192 5.97041 6.06910 6.19032 6.22563 6.24250 6.28045 6.38725 6.47856 6.51726 6.61310 6.68252 6.78729 6.84110 6.97829 7.09321 7.46010 7.63476 7.98660 8.36431 9.05524 9.27851 9.83872 10.60049 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.002938 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.370114 B = 9529.487729 C = 9878.125839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.040 3.960 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.307 4.307 8 H 0.104 0.896 9 N -0.406 5.406 10 C 0.479 3.521 11 O -0.584 6.584 12 C -0.083 4.083 13 C -0.070 4.070 14 C -0.140 4.140 15 C 0.075 3.925 16 O -0.258 6.258 17 C 0.126 3.874 18 C -0.192 4.192 19 C -0.082 4.082 20 C -0.159 4.159 21 C -0.087 4.087 22 C -0.151 4.151 23 C -0.128 4.128 24 C -0.072 4.072 25 C 0.127 3.873 26 C -0.210 4.210 27 C -0.159 4.159 28 H 0.269 0.731 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -15.895 -0.996 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.434 4.434 8 H 0.121 0.879 9 N -0.122 5.122 10 C 0.269 3.731 11 O -0.470 6.470 12 C -0.086 4.086 13 C -0.089 4.089 14 C -0.158 4.158 15 C 0.033 3.967 16 O -0.170 6.170 17 C 0.083 3.917 18 C -0.210 4.210 19 C -0.100 4.100 20 C -0.177 4.177 21 C -0.105 4.105 22 C -0.170 4.170 23 C -0.147 4.147 24 C -0.091 4.091 25 C 0.022 3.978 26 C -0.248 4.248 27 C -0.197 4.197 28 H 0.079 0.921 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.138 0.862 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.977 -15.716 -0.855 16.836 hybrid contribution 0.285 1.033 -0.075 1.074 sum -5.692 -14.683 -0.930 15.775 Atomic orbital electron populations 1.69912 1.05970 1.27998 1.46220 1.25253 0.95372 0.99596 0.96283 0.85949 0.80094 0.81375 0.77865 1.19148 1.20524 1.20662 1.19722 0.94932 0.82939 1.45821 0.87862 1.43083 1.19103 1.05013 1.44993 1.17794 0.87511 0.83090 0.84738 1.90633 1.21212 1.86339 1.48824 1.20396 0.93708 0.95199 0.99314 1.21070 1.00377 0.90686 0.96762 1.21219 0.92738 0.99137 1.02749 1.18709 0.90046 0.84702 1.03232 1.84323 1.67949 1.26053 1.38707 1.19270 0.96012 0.89204 0.87184 1.21448 1.04355 1.01740 0.93479 1.21005 0.97490 0.93101 0.98424 1.21078 1.01248 0.97510 0.97886 1.20933 0.98257 0.98585 0.92690 1.20429 1.04133 0.91512 1.00900 1.21101 1.00472 0.91986 1.01102 1.21529 0.93241 0.97930 0.96394 1.21332 0.89425 1.00444 0.86634 1.23540 1.02116 0.94030 1.05160 1.22921 1.02274 0.93701 1.00817 0.92083 0.84896 0.85552 0.84994 0.85718 0.86008 0.85456 0.85205 0.85261 0.84026 0.86249 0.89649 0.89066 0.89490 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.52 10.71 55.50 0.59 -20.93 16 2 C 0.04 1.01 5.00 -17.46 -0.09 0.92 16 3 Si 0.92 19.99 29.58 -169.99 -5.03 14.96 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.31 -8.23 9.20 -15.00 -0.14 -8.37 16 8 H 0.10 2.94 7.35 -52.49 -0.39 2.55 16 9 N -0.41 -10.01 2.93 -108.91 -0.32 -10.33 16 10 C 0.48 11.64 7.13 -12.49 -0.09 11.56 16 11 O -0.58 -16.17 16.49 5.26 0.09 -16.09 16 12 C -0.08 -1.61 4.17 -104.95 -0.44 -2.04 16 13 C -0.07 -1.20 9.60 -39.20 -0.38 -1.57 16 14 C -0.14 -2.08 9.17 -39.49 -0.36 -2.44 16 15 C 0.08 1.12 4.30 -38.99 -0.17 0.95 16 16 O -0.26 -3.70 9.97 -2.95 -0.03 -3.73 16 17 C 0.13 1.65 6.61 -39.20 -0.26 1.39 16 18 C -0.19 -2.45 8.99 -39.43 -0.35 -2.80 16 19 C -0.08 -0.89 10.04 -39.60 -0.40 -1.28 16 20 C -0.16 -1.50 10.04 -39.55 -0.40 -1.90 16 21 C -0.09 -0.80 10.04 -39.60 -0.40 -1.20 16 22 C -0.15 -1.65 9.99 -39.42 -0.39 -2.05 16 23 C -0.13 -1.90 9.97 -39.49 -0.39 -2.30 16 24 C -0.07 -1.23 6.95 -39.20 -0.27 -1.50 16 25 C 0.13 2.67 1.99 -67.93 -0.14 2.54 16 26 C -0.21 -3.74 7.52 -26.73 -0.20 -3.94 16 27 C -0.16 -3.12 9.56 -26.73 -0.26 -3.37 16 28 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 29 H 0.13 2.26 8.00 -52.49 -0.42 1.84 16 30 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.13 1.81 6.51 -52.49 -0.34 1.47 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.14 2.48 5.59 -52.48 -0.29 2.18 16 38 H 0.12 2.60 6.56 -51.93 -0.34 2.26 16 39 H 0.09 1.58 7.40 -51.93 -0.38 1.20 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -29.41 353.76 -9.59 -38.99 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.11 Total: 9.19 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -5.12 Total: -17.41 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.28 Total: -31.25 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.06 Total: -19.82 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.41 -9.59 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354196320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.732 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds