Wall clock time and date at job start Tue Mar 31 2020 13:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47326 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47115 * 299.99368 * 3 2 1 6 6 H 1.48504 * 109.47184 * 59.99694 * 3 2 1 7 7 C 1.39023 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99889 * 194.50711 * 7 2 1 9 9 N 1.36897 * 119.99849 * 14.50779 * 7 2 1 10 10 C 1.34780 * 120.00063 * 200.71886 * 9 7 2 11 11 O 1.21622 * 119.99764 * 354.32690 * 10 9 7 12 12 C 1.47490 * 119.99785 * 174.32346 * 10 9 7 13 13 C 1.39806 * 120.08889 * 144.71174 * 12 10 9 14 14 C 1.37676 * 119.90656 * 179.97438 * 13 12 10 15 15 C 1.39036 * 120.09108 * 0.25013 * 14 13 12 16 16 O 1.35698 * 119.90732 * 179.74583 * 15 14 13 17 17 C 1.35886 * 117.99876 * 77.15148 * 16 15 14 18 18 C 1.38754 * 120.05845 * 5.06949 * 17 16 15 19 19 C 1.38138 * 119.93917 * 179.77024 * 18 17 16 20 20 C 1.38274 * 120.06159 * 0.50484 * 19 18 17 21 21 C 1.38274 * 120.11222 * 359.74342 * 20 19 18 22 22 C 1.38140 * 120.05920 * 0.02562 * 21 20 19 23 23 C 1.39038 * 120.18419 * 359.49245 * 15 14 13 24 24 C 1.37673 * 120.09151 * 0.50844 * 23 15 14 25 25 C 1.46498 * 120.00105 * 20.72589 * 9 7 2 26 26 C 1.53000 * 117.50459 * 129.96270 * 25 9 7 27 27 C 1.53001 * 60.00209 * 252.50917 * 26 25 9 28 28 H 0.97001 * 119.99854 * 4.97487 * 1 2 3 29 29 H 1.07998 * 120.04534 * 359.94649 * 13 12 10 30 30 H 1.07994 * 119.95426 * 179.97438 * 14 13 12 31 31 H 1.08001 * 120.03216 * 0.02562 * 18 17 16 32 32 H 1.07997 * 119.96982 * 180.25143 * 19 18 17 33 33 H 1.07991 * 119.94402 * 179.72888 * 20 19 18 34 34 H 1.07995 * 119.96815 * 179.97438 * 21 20 19 35 35 H 1.07994 * 120.02687 * 179.97438 * 22 21 20 36 36 H 1.07996 * 119.95213 * 180.23659 * 23 15 14 37 37 H 1.08007 * 120.05100 * 179.77065 * 24 23 15 38 38 H 1.09006 * 115.54891 * 275.67309 * 25 9 7 39 39 H 1.09002 * 117.49169 * 359.97438 * 26 25 9 40 40 H 1.08995 * 117.50359 * 145.01968 * 26 25 9 41 41 H 1.08996 * 117.49874 * 252.50476 * 27 26 25 42 42 H 1.08997 * 117.51974 * 107.47788 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7078 1.3465 0.0006 5 1 1.8891 2.3964 -1.2126 6 1 1.8889 2.3966 1.2125 7 6 2.0089 -1.2039 0.0005 8 1 3.0631 -1.2187 0.2348 9 7 1.3572 -2.3707 -0.2959 10 6 1.8772 -3.5512 0.0949 11 8 2.9740 -3.5887 0.6192 12 6 1.1161 -4.7973 -0.1131 13 6 1.7858 -5.9832 -0.4287 14 6 1.0717 -7.1444 -0.6216 15 6 -0.3140 -7.1375 -0.5081 16 8 -1.0146 -8.2830 -0.7040 17 6 -1.0244 -9.2037 0.2953 18 6 -0.4209 -8.9161 1.5112 19 6 -0.4364 -9.8520 2.5271 20 6 -1.0435 -11.0786 2.3296 21 6 -1.6412 -11.3696 1.1172 22 6 -1.6327 -10.4354 0.0996 23 6 -0.9835 -5.9614 -0.1892 24 6 -0.2769 -4.7959 0.0053 25 6 0.0946 -2.3364 -1.0382 26 6 -0.0350 -3.2550 -2.2548 27 6 0.1204 -1.7453 -2.4492 28 1 -0.4850 0.8369 -0.0728 29 1 2.8618 -5.9884 -0.5214 30 1 1.5882 -8.0608 -0.8658 31 1 0.0570 -7.9598 1.6646 32 1 0.0296 -9.6271 3.4750 33 1 -1.0507 -11.8105 3.1236 34 1 -2.1143 -12.3285 0.9654 35 1 -2.0992 -10.6635 -0.8473 36 1 -2.0596 -5.9612 -0.0982 37 1 -0.7980 -3.8819 0.2493 38 1 -0.7992 -2.1667 -0.4378 39 1 0.8194 -3.8846 -2.5032 40 1 -1.0141 -3.6900 -2.4550 41 1 -0.7564 -1.1872 -2.7773 42 1 1.0768 -1.3818 -2.8251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354196320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:52 Heat of formation + Delta-G solvation = 22.577723 kcal Electronic energy + Delta-G solvation = -26485.788570 eV Core-core repulsion = 22783.556188 eV Total energy + Delta-G solvation = -3702.232381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00956 -41.04569 -39.31033 -38.07545 -37.85091 -35.05310 -33.18769 -32.14555 -32.12811 -31.55816 -30.45853 -27.24900 -25.12293 -23.99848 -23.61277 -23.49713 -22.93951 -22.58277 -20.99921 -19.70451 -19.01171 -18.20245 -17.77527 -17.14671 -17.12123 -16.82256 -16.29430 -15.91532 -15.68813 -15.42764 -15.17019 -15.11782 -14.70185 -14.48613 -14.42720 -14.33061 -14.13131 -13.63041 -13.23715 -13.01512 -12.97139 -12.85144 -12.53106 -12.49563 -12.32086 -12.14102 -11.93516 -11.88327 -11.69335 -11.20429 -10.76191 -10.43890 -10.05976 -9.94175 -9.78833 -9.67266 -9.21262 -8.34594 -5.98722 -0.25944 0.30012 0.40275 0.45519 1.34073 1.40761 1.52778 1.80515 2.23296 2.23987 2.74502 2.83561 2.86843 3.05047 3.18111 3.77929 3.83725 3.84656 3.92342 4.00599 4.14349 4.24089 4.27603 4.30182 4.35506 4.41868 4.50000 4.50794 4.59979 4.78580 4.85574 4.95005 5.03589 5.08977 5.14600 5.23909 5.32514 5.36001 5.38227 5.43060 5.47198 5.49682 5.59513 5.60599 5.96720 6.03281 6.45907 6.56475 7.10810 7.38343 7.94878 8.66015 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.002938 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.370114 B = 9529.487729 C = 9878.125839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.017 3.983 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.275 1.275 7 C -0.348 4.348 8 H 0.070 0.930 9 N -0.416 5.416 10 C 0.468 3.532 11 O -0.635 6.635 12 C -0.107 4.107 13 C -0.071 4.071 14 C -0.130 4.130 15 C 0.093 3.907 16 O -0.264 6.264 17 C 0.101 3.899 18 C -0.210 4.210 19 C -0.093 4.093 20 C -0.154 4.154 21 C -0.082 4.082 22 C -0.154 4.154 23 C -0.119 4.119 24 C -0.066 4.066 25 C 0.108 3.892 26 C -0.173 4.173 27 C -0.161 4.161 28 H 0.276 0.724 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -18.315 -1.537 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.188 4.188 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.088 0.912 9 N -0.131 5.131 10 C 0.259 3.741 11 O -0.525 6.525 12 C -0.110 4.110 13 C -0.090 4.090 14 C -0.148 4.148 15 C 0.051 3.949 16 O -0.177 6.177 17 C 0.059 3.941 18 C -0.228 4.228 19 C -0.111 4.111 20 C -0.172 4.172 21 C -0.099 4.099 22 C -0.173 4.173 23 C -0.137 4.137 24 C -0.085 4.085 25 C 0.004 3.996 26 C -0.211 4.211 27 C -0.199 4.199 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.165 0.835 31 H 0.132 0.868 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.154 0.846 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.516 -18.144 -1.413 20.093 hybrid contribution 0.985 1.564 0.168 1.856 sum -7.531 -16.581 -1.245 18.253 Atomic orbital electron populations 1.69956 1.06415 1.29012 1.45260 1.25855 0.96238 1.01506 0.95216 0.85112 0.78284 0.77893 0.78489 1.20321 1.18832 1.20012 1.19565 0.94137 0.84910 1.48975 0.91248 1.43234 1.20041 1.04554 1.45278 1.18605 0.87243 0.84618 0.83619 1.90567 1.23566 1.87436 1.50929 1.20035 0.94503 0.93554 1.02916 1.21031 1.00230 0.90780 0.96989 1.21324 0.92974 0.98822 1.01712 1.18764 0.89965 0.85249 1.00934 1.84277 1.68020 1.25919 1.39468 1.19488 0.97855 0.89790 0.86995 1.21424 1.05314 1.01725 0.94368 1.21259 0.97794 0.93475 0.98524 1.21473 0.99686 0.97230 0.98777 1.21368 0.97273 0.99409 0.91881 1.20743 1.03575 0.90834 1.02114 1.21252 1.01582 0.90958 0.99949 1.21387 0.92032 0.98628 0.96413 1.21311 0.87600 1.03653 0.87025 1.23511 1.03433 0.92791 1.01332 1.22928 1.01987 0.95441 0.99545 0.91389 0.85610 0.83453 0.86779 0.84506 0.83197 0.82125 0.83774 0.82704 0.84638 0.86983 0.90432 0.85704 0.87783 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.68 10.71 21.68 0.23 -43.45 16 2 C 0.02 0.86 5.00 84.95 0.42 1.28 16 3 Si 0.98 41.81 29.58 68.60 2.03 43.83 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.35 -19.79 9.20 84.09 0.77 -19.01 16 8 H 0.07 4.30 7.35 -2.91 -0.02 4.28 16 9 N -0.42 -21.60 2.93 -616.73 -1.81 -23.41 16 10 C 0.47 24.18 7.13 86.68 0.62 24.79 16 11 O -0.64 -37.90 16.49 -4.10 -0.07 -37.97 16 12 C -0.11 -4.29 4.17 -20.08 -0.08 -4.37 16 13 C -0.07 -2.49 9.60 22.52 0.22 -2.27 16 14 C -0.13 -3.74 9.17 22.33 0.20 -3.53 16 15 C 0.09 2.61 4.30 22.65 0.10 2.70 16 16 O -0.26 -6.97 9.97 -33.46 -0.33 -7.31 16 17 C 0.10 2.42 6.61 22.52 0.15 2.57 16 18 C -0.21 -5.07 8.99 22.37 0.20 -4.87 16 19 C -0.09 -1.80 10.04 22.25 0.22 -1.58 16 20 C -0.15 -2.34 10.04 22.29 0.22 -2.11 16 21 C -0.08 -1.18 10.04 22.26 0.22 -0.96 16 22 C -0.15 -2.88 9.99 22.37 0.22 -2.66 16 23 C -0.12 -3.33 9.97 22.33 0.22 -3.11 16 24 C -0.07 -2.23 6.95 22.52 0.16 -2.07 16 25 C 0.11 4.65 1.99 44.99 0.09 4.74 16 26 C -0.17 -5.99 7.52 30.59 0.23 -5.76 16 27 C -0.16 -6.29 9.56 30.60 0.29 -6.00 16 28 H 0.28 12.89 8.31 -92.71 -0.77 12.12 16 29 H 0.13 4.51 8.00 -2.91 -0.02 4.49 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.11 3.10 6.51 -2.91 -0.02 3.09 16 32 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.15 1.43 8.06 -2.92 -0.02 1.40 16 34 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.14 4.76 5.59 -2.91 -0.02 4.75 16 38 H 0.11 4.95 6.56 -2.38 -0.02 4.93 16 39 H 0.08 2.85 7.40 -2.39 -0.02 2.83 16 40 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 42 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -67.67 353.76 5.58 -62.09 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 1.04 Total: 28.41 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.49 Total: -22.21 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.57 Total: -66.86 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.40 Total: -45.28 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -67.67 5.58 -62.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354196320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.670 kcal (2) G-P(sol) polarization free energy of solvation -67.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds