Wall clock time and date at job start Tue Mar 31 2020 13:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38267 * 120.08433 * 2 1 4 4 C 1.37966 * 119.71630 * 180.26369 * 3 2 1 5 5 C 1.38838 * 120.50089 * 0.33574 * 4 3 2 6 6 C 1.37667 * 119.84863 * 358.92351 * 5 4 3 7 7 C 1.37917 * 120.08905 * 179.97438 * 2 1 3 8 8 C 1.50602 * 122.86076 * 181.29204 * 6 5 4 9 9 C 1.52783 * 110.85498 * 339.92515 * 8 6 5 10 10 N 1.47225 * 107.92499 * 47.48083 * 9 8 6 11 11 S 1.65600 * 121.32577 * 115.81015 * 10 9 8 12 12 O 1.42103 * 104.27889 * 206.07132 * 11 10 9 13 13 O 1.42099 * 104.27813 * 333.93080 * 11 10 9 14 14 C 1.81398 * 104.45051 * 90.00379 * 11 10 9 15 15 C 1.52998 * 109.47270 * 180.02562 * 14 11 10 16 16 C 1.53006 * 109.47087 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47035 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00484 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00177 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99518 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00313 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47015 * 59.99997 * 21 19 17 23 23 H 1.48499 * 109.47181 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46857 * 300.00202 * 21 19 17 25 25 C 1.46676 * 117.34546 * 295.83303 * 10 9 8 26 26 H 1.09005 * 109.47123 * 89.99955 * 1 2 3 27 27 H 1.09000 * 109.47214 * 209.99713 * 1 2 3 28 28 H 1.08996 * 109.47442 * 330.00066 * 1 2 3 29 29 H 1.07992 * 120.14297 * 0.28623 * 3 2 1 30 30 H 1.08002 * 119.74497 * 180.02562 * 4 3 2 31 31 H 1.07992 * 119.70540 * 359.81960 * 7 2 1 32 32 H 1.09001 * 109.20074 * 100.28035 * 8 6 5 33 33 H 1.08998 * 109.19916 * 219.57171 * 8 6 5 34 34 H 1.09001 * 109.77020 * 167.08584 * 9 8 6 35 35 H 1.09000 * 109.77343 * 287.82028 * 9 8 6 36 36 H 1.09011 * 109.46686 * 300.00106 * 14 11 10 37 37 H 1.08999 * 109.47428 * 59.99376 * 14 11 10 38 38 H 1.08997 * 109.47044 * 299.99746 * 15 14 11 39 39 H 1.09007 * 109.47244 * 60.00155 * 15 14 11 40 40 H 1.08997 * 109.47382 * 300.00041 * 16 15 14 41 41 H 1.09002 * 109.46995 * 60.00367 * 16 15 14 42 42 H 0.97003 * 119.99693 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.43525 * 164.50078 * 25 10 9 44 44 H 1.08999 * 109.43947 * 284.36979 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1964 0.0000 4 6 3.5796 1.1875 -0.0055 5 6 4.2766 -0.0132 -0.0181 6 6 3.5881 -1.2052 -0.0027 7 6 2.1984 -1.1933 0.0005 8 6 4.2749 -2.5454 0.0137 9 6 5.7161 -2.4241 -0.4789 10 7 6.3377 -1.2842 0.2152 11 16 7.6119 -1.4978 1.2510 12 8 7.5275 -0.3945 2.1427 13 8 7.4632 -2.8312 1.7192 14 6 9.0812 -1.3533 0.1971 15 6 10.3394 -1.5350 1.0484 16 6 11.5787 -1.4138 0.1593 17 6 12.8180 -1.5922 0.9979 18 1 12.7306 -1.7743 2.0589 19 6 14.0636 -1.5229 0.4108 20 7 14.1702 -1.3006 -0.8810 21 14 15.5998 -1.7447 1.4502 22 1 15.5773 -3.0863 2.0867 23 1 16.8027 -1.6257 0.5875 24 1 15.6406 -0.6980 2.5029 25 6 5.7831 0.0481 -0.0471 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6638 2.1338 0.0047 30 1 4.1215 2.1218 -0.0051 31 1 1.6551 -2.1266 0.0039 32 1 4.2756 -2.9355 1.0315 33 1 3.7318 -3.2344 -0.6331 34 1 6.2627 -3.3386 -0.2485 35 1 5.7246 -2.2507 -1.5550 36 1 9.0513 -2.1220 -0.5753 37 1 9.0976 -0.3689 -0.2706 38 1 10.3695 -0.7667 1.8210 39 1 10.3229 -2.5197 1.5157 40 1 11.5485 -2.1823 -0.6130 41 1 11.5955 -0.4292 -0.3082 42 1 15.0465 -1.2523 -1.2941 43 1 6.1353 0.7440 0.7145 44 1 6.1099 0.3903 -1.0290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360010486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:58 Heat of formation + Delta-G solvation = -68.077810 kcal Electronic energy + Delta-G solvation = -24759.648573 eV Core-core repulsion = 21188.929024 eV Total energy + Delta-G solvation = -3570.719549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.24289 -37.09375 -36.97202 -35.75635 -34.67617 -33.12226 -32.72415 -32.19223 -29.67742 -27.99793 -27.72192 -24.44588 -23.85030 -23.53243 -22.43837 -20.63361 -20.03132 -18.51097 -17.61269 -16.84646 -16.61862 -16.01160 -15.64774 -15.41714 -15.25124 -14.87087 -14.63937 -14.48091 -14.10375 -13.94854 -13.67868 -13.26531 -12.90103 -12.78422 -12.59677 -12.45044 -12.29019 -12.27628 -11.97139 -11.83720 -11.79553 -11.77237 -11.42322 -11.25226 -11.14247 -10.90290 -10.88139 -10.83507 -10.44360 -9.96064 -9.56898 -9.27874 -9.02968 -8.87908 -8.60347 -8.41174 -6.06290 -4.09469 0.38421 1.10759 1.16665 2.68221 3.31795 3.35633 3.38857 3.46870 3.98966 4.21382 4.35525 4.41987 4.45660 4.64409 4.69116 4.77386 4.92920 4.96805 5.09591 5.14566 5.19067 5.22945 5.27147 5.28488 5.30008 5.36232 5.43448 5.50804 5.54229 5.70214 5.80069 5.87348 5.91123 5.95700 6.17520 6.24023 6.35760 6.37237 6.43358 6.51508 6.79956 6.85720 7.55705 7.65690 7.91497 8.31933 8.96485 9.55159 11.04847 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035138 B = 0.002383 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.668236 B =11749.035288 C =11938.605036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.062 4.062 7 C -0.122 4.122 8 C -0.097 4.097 9 C 0.122 3.878 10 N -1.006 6.006 11 S 2.599 3.401 12 O -0.958 6.958 13 O -0.957 6.957 14 C -0.607 4.607 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.157 3.843 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.262 0.738 43 H 0.106 0.894 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.832 2.070 -2.583 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.128 4.128 5 C -0.093 4.093 6 C -0.062 4.062 7 C -0.140 4.140 8 C -0.135 4.135 9 C -0.004 4.004 10 N -0.842 5.842 11 S 2.697 3.303 12 O -0.949 6.949 13 O -0.948 6.948 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C 0.032 3.968 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.790 1.921 -1.784 26.918 hybrid contribution 1.106 0.077 -0.247 1.136 sum -25.684 1.998 -2.032 25.842 Atomic orbital electron populations 1.20772 0.91268 1.02704 1.02210 1.19833 0.95988 0.93247 0.99888 1.20926 0.94017 0.97523 1.01619 1.21059 0.94311 0.97385 1.00094 1.19751 0.95301 0.92929 1.01294 1.19464 0.93215 0.94487 0.99080 1.21037 0.93347 0.97647 1.01974 1.20813 0.95593 0.94036 1.03095 1.21382 0.93240 0.88867 0.96877 1.57945 1.48882 1.12818 1.64570 1.05449 0.75391 0.74247 0.75217 1.93554 1.85828 1.54530 1.60954 1.93558 1.85260 1.37579 1.78360 1.30597 1.16925 1.11323 1.15076 1.21513 0.93023 1.01759 0.98276 1.19057 0.89577 0.97676 0.94403 1.21216 0.90934 1.49469 0.94923 0.92415 1.25025 0.99262 0.95096 0.95011 1.69948 1.24172 1.49398 1.09899 0.86606 0.82133 0.78852 0.80141 1.20110 1.21243 1.20114 1.20259 0.89868 0.84100 1.02602 0.91266 0.91644 0.91603 0.86042 0.85672 0.86181 0.89800 0.89644 0.88333 0.90653 0.85390 0.85394 0.91584 0.91584 0.96116 0.96117 0.92835 0.87572 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.02 36.00 0.36 -0.33 16 2 C -0.09 -0.78 5.87 -104.73 -0.61 -1.40 16 3 C -0.12 -1.08 9.71 -39.67 -0.39 -1.47 16 4 C -0.11 -1.05 9.62 -39.46 -0.38 -1.43 16 5 C -0.09 -0.98 5.82 -104.56 -0.61 -1.59 16 6 C -0.06 -0.65 5.76 -104.60 -0.60 -1.25 16 7 C -0.12 -1.14 9.25 -39.42 -0.36 -1.50 16 8 C -0.10 -0.91 5.87 -28.04 -0.16 -1.08 16 9 C 0.12 1.20 6.35 -3.76 -0.02 1.17 16 10 N -1.01 -11.89 3.19 -115.05 -0.37 -12.26 16 11 S 2.60 38.99 5.47 -107.50 -0.59 38.40 16 12 O -0.96 -16.97 16.63 -57.54 -0.96 -17.92 16 13 O -0.96 -16.67 16.77 -57.54 -0.96 -17.63 16 14 C -0.61 -9.31 6.18 37.16 0.23 -9.08 16 15 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 16 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 17 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 21 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C 0.16 1.67 6.28 -5.05 -0.03 1.64 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 28 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.13 0.96 8.05 -52.49 -0.42 0.54 16 31 H 0.12 0.90 8.05 -52.49 -0.42 0.47 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.10 0.95 7.12 -51.93 -0.37 0.58 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 37 H 0.13 1.75 8.14 -51.92 -0.42 1.32 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.11 1.18 6.87 -51.93 -0.36 0.82 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -34.98 371.52 -11.86 -46.84 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -7.02 Total: -2.20 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -3.27 Total: -31.58 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.37 Total: -38.06 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.92 Total: -35.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 38.99 SS G_CDS: -0.59 Total: 38.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.98 -11.86 -46.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360010486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.242 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds