Wall clock time and date at job start Tue Mar 31 2020 13:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38267 * 120.08433 * 2 1 4 4 C 1.37966 * 119.71630 * 180.26369 * 3 2 1 5 5 C 1.38838 * 120.50089 * 0.33574 * 4 3 2 6 6 C 1.37667 * 119.84863 * 358.92351 * 5 4 3 7 7 C 1.37917 * 120.08905 * 179.97438 * 2 1 3 8 8 C 1.50602 * 122.86076 * 181.29204 * 6 5 4 9 9 C 1.52783 * 110.85498 * 339.92515 * 8 6 5 10 10 N 1.47225 * 107.92499 * 47.48083 * 9 8 6 11 11 S 1.65600 * 121.32577 * 115.81015 * 10 9 8 12 12 O 1.42103 * 104.27889 * 206.07132 * 11 10 9 13 13 O 1.42099 * 104.27813 * 333.93080 * 11 10 9 14 14 C 1.81398 * 104.45051 * 90.00379 * 11 10 9 15 15 C 1.52998 * 109.47270 * 180.02562 * 14 11 10 16 16 C 1.53006 * 109.47087 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47035 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00484 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00177 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99518 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00313 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47015 * 59.99997 * 21 19 17 23 23 H 1.48499 * 109.47181 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46857 * 300.00202 * 21 19 17 25 25 C 1.46676 * 117.34546 * 295.83303 * 10 9 8 26 26 H 1.09005 * 109.47123 * 89.99955 * 1 2 3 27 27 H 1.09000 * 109.47214 * 209.99713 * 1 2 3 28 28 H 1.08996 * 109.47442 * 330.00066 * 1 2 3 29 29 H 1.07992 * 120.14297 * 0.28623 * 3 2 1 30 30 H 1.08002 * 119.74497 * 180.02562 * 4 3 2 31 31 H 1.07992 * 119.70540 * 359.81960 * 7 2 1 32 32 H 1.09001 * 109.20074 * 100.28035 * 8 6 5 33 33 H 1.08998 * 109.19916 * 219.57171 * 8 6 5 34 34 H 1.09001 * 109.77020 * 167.08584 * 9 8 6 35 35 H 1.09000 * 109.77343 * 287.82028 * 9 8 6 36 36 H 1.09011 * 109.46686 * 300.00106 * 14 11 10 37 37 H 1.08999 * 109.47428 * 59.99376 * 14 11 10 38 38 H 1.08997 * 109.47044 * 299.99746 * 15 14 11 39 39 H 1.09007 * 109.47244 * 60.00155 * 15 14 11 40 40 H 1.08997 * 109.47382 * 300.00041 * 16 15 14 41 41 H 1.09002 * 109.46995 * 60.00367 * 16 15 14 42 42 H 0.97003 * 119.99693 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.43525 * 164.50078 * 25 10 9 44 44 H 1.08999 * 109.43947 * 284.36979 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1964 0.0000 4 6 3.5796 1.1875 -0.0055 5 6 4.2766 -0.0132 -0.0181 6 6 3.5881 -1.2052 -0.0027 7 6 2.1984 -1.1933 0.0005 8 6 4.2749 -2.5454 0.0137 9 6 5.7161 -2.4241 -0.4789 10 7 6.3377 -1.2842 0.2152 11 16 7.6119 -1.4978 1.2510 12 8 7.5275 -0.3945 2.1427 13 8 7.4632 -2.8312 1.7192 14 6 9.0812 -1.3533 0.1971 15 6 10.3394 -1.5350 1.0484 16 6 11.5787 -1.4138 0.1593 17 6 12.8180 -1.5922 0.9979 18 1 12.7306 -1.7743 2.0589 19 6 14.0636 -1.5229 0.4108 20 7 14.1702 -1.3006 -0.8810 21 14 15.5998 -1.7447 1.4502 22 1 15.5773 -3.0863 2.0867 23 1 16.8027 -1.6257 0.5875 24 1 15.6406 -0.6980 2.5029 25 6 5.7831 0.0481 -0.0471 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6638 2.1338 0.0047 30 1 4.1215 2.1218 -0.0051 31 1 1.6551 -2.1266 0.0039 32 1 4.2756 -2.9355 1.0315 33 1 3.7318 -3.2344 -0.6331 34 1 6.2627 -3.3386 -0.2485 35 1 5.7246 -2.2507 -1.5550 36 1 9.0513 -2.1220 -0.5753 37 1 9.0976 -0.3689 -0.2706 38 1 10.3695 -0.7667 1.8210 39 1 10.3229 -2.5197 1.5157 40 1 11.5485 -2.1823 -0.6130 41 1 11.5955 -0.4292 -0.3082 42 1 15.0465 -1.2523 -1.2941 43 1 6.1353 0.7440 0.7145 44 1 6.1099 0.3903 -1.0290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360010486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:57 Heat of formation + Delta-G solvation = -89.347207 kcal Electronic energy + Delta-G solvation = -24760.570883 eV Core-core repulsion = 21188.929024 eV Total energy + Delta-G solvation = -3571.641859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94354 -38.30796 -37.84409 -37.06866 -36.47496 -34.17236 -33.82334 -33.44071 -30.38284 -29.67378 -28.56209 -25.64724 -25.13642 -24.44047 -23.14492 -22.33858 -20.90034 -19.59288 -18.65929 -18.56735 -17.72648 -17.30557 -16.71782 -16.51670 -16.34615 -16.04879 -15.81145 -15.52026 -15.22093 -14.55679 -14.50759 -14.40744 -14.09682 -13.90775 -13.64746 -13.56218 -13.50926 -13.35393 -13.22711 -13.01825 -12.93569 -12.80016 -12.73839 -12.68191 -12.62683 -12.16598 -12.10627 -11.85550 -11.76273 -11.56964 -11.39783 -11.12038 -10.57658 -10.08866 -9.59156 -9.29451 -8.23130 -6.34248 -0.83361 0.41401 0.48104 1.39915 1.42483 1.50444 1.60947 2.39458 2.77048 2.79054 3.08378 3.10289 3.52968 3.74437 3.75604 3.88448 4.01027 4.04352 4.08559 4.25028 4.35112 4.37676 4.45706 4.55710 4.58360 4.62344 4.63865 4.74133 4.83850 4.86221 4.93138 4.97108 5.02717 5.05779 5.10804 5.23091 5.33152 5.44201 5.45263 5.56982 5.61876 5.72255 5.76762 5.78493 6.14493 6.18863 6.80980 7.34911 8.88049 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035138 B = 0.002383 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.668236 B =11749.035288 C =11938.605036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.130 4.130 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.079 4.079 7 C -0.132 4.132 8 C -0.097 4.097 9 C 0.113 3.887 10 N -1.000 6.000 11 S 2.624 3.376 12 O -0.987 6.987 13 O -0.983 6.983 14 C -0.605 4.605 15 C -0.107 4.107 16 C 0.032 3.968 17 C -0.554 4.554 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.268 1.268 25 C 0.152 3.848 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.004 0.996 41 H 0.003 0.997 42 H 0.265 0.735 43 H 0.098 0.902 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.137 2.111 -2.828 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.114 4.114 6 C -0.080 4.080 7 C -0.150 4.150 8 C -0.135 4.135 9 C -0.012 4.012 10 N -0.838 5.838 11 S 2.722 3.278 12 O -0.978 6.978 13 O -0.973 6.973 14 C -0.736 4.736 15 C -0.146 4.146 16 C -0.006 4.006 17 C -0.592 4.592 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.787 3.213 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.193 1.193 25 C 0.027 3.973 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -28.095 1.959 -2.021 28.235 hybrid contribution 1.400 0.089 -0.219 1.420 sum -26.695 2.048 -2.240 26.867 Atomic orbital electron populations 1.20811 0.89446 1.03463 1.03052 1.20209 0.97464 0.93063 0.98898 1.21234 0.93943 0.98538 1.01120 1.21301 0.94935 0.97642 0.99990 1.19882 0.95231 0.93665 1.02589 1.19680 0.93955 0.94722 0.99614 1.21284 0.93132 0.98682 1.01866 1.20843 0.95527 0.94255 1.02869 1.21673 0.93320 0.88089 0.98072 1.57635 1.47661 1.14179 1.64335 1.04458 0.75441 0.72981 0.74946 1.93511 1.86363 1.55432 1.62460 1.93519 1.85746 1.38844 1.79182 1.30538 1.14915 1.13178 1.15004 1.21327 0.93278 1.01870 0.98135 1.18954 0.91305 0.95938 0.94451 1.21710 0.92473 1.49506 0.95500 0.92192 1.25945 1.02723 0.94657 0.96281 1.70063 1.25100 1.50181 1.11527 0.85529 0.77980 0.79194 0.78550 1.19220 1.20584 1.19263 1.20439 0.90175 0.83095 1.03577 0.90275 0.91016 0.90765 0.84164 0.84374 0.84668 0.91194 0.87115 0.88282 0.88218 0.83498 0.83619 0.91655 0.91556 0.97783 0.97847 0.92610 0.88432 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.02 71.23 0.71 -0.40 16 2 C -0.10 -1.51 5.87 -19.94 -0.12 -1.63 16 3 C -0.13 -2.08 9.71 22.21 0.22 -1.87 16 4 C -0.12 -2.16 9.62 22.35 0.22 -1.94 16 5 C -0.11 -2.30 5.82 -19.82 -0.12 -2.41 16 6 C -0.08 -1.56 5.76 -19.85 -0.11 -1.68 16 7 C -0.13 -2.25 9.25 22.37 0.21 -2.04 16 8 C -0.10 -1.68 5.87 29.75 0.17 -1.51 16 9 C 0.11 2.04 6.35 86.17 0.55 2.58 16 10 N -1.00 -22.54 3.19 -517.90 -1.65 -24.19 16 11 S 2.62 77.60 5.47 -56.49 -0.31 77.29 16 12 O -0.99 -34.98 16.63 -127.65 -2.12 -37.10 16 13 O -0.98 -34.00 16.77 -127.65 -2.14 -36.14 16 14 C -0.61 -18.16 6.18 71.98 0.44 -17.72 16 15 C -0.11 -4.36 5.16 30.60 0.16 -4.20 16 16 C 0.03 1.64 4.97 29.85 0.15 1.79 16 17 C -0.55 -31.59 9.11 25.60 0.23 -31.35 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.00 0.13 5.46 84.66 0.46 0.59 16 20 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 21 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.15 3.07 6.28 85.63 0.54 3.61 16 26 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 28 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 29 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.14 1.96 8.05 -2.91 -0.02 1.93 16 31 H 0.14 1.76 8.05 -2.91 -0.02 1.74 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.10 1.78 7.12 -2.39 -0.02 1.76 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.15 3.82 8.14 -2.38 -0.02 3.80 16 37 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.10 2.12 6.87 -2.38 -0.02 2.11 16 44 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -75.21 371.52 0.77 -74.44 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.97 Total: 13.02 kcal Atomic # 6 Polarization: -61.88 SS G_CDS: 3.71 Total: -58.17 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.37 Total: -79.58 kcal Atomic # 8 Polarization: -68.98 SS G_CDS: -4.26 Total: -73.24 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 77.60 SS G_CDS: -0.31 Total: 77.29 kcal Total: -75.21 0.77 -74.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360010486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.906 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds