Wall clock time and date at job start Tue Mar 31 2020 13:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38281 * 120.12061 * 2 1 4 4 C 1.37928 * 120.35483 * 180.17594 * 3 2 1 5 5 C 1.39285 * 120.24283 * 0.05624 * 4 3 2 6 6 C 1.38975 * 118.85863 * 359.60013 * 5 4 3 7 7 C 1.37669 * 120.77266 * 0.54098 * 6 5 4 8 8 C 1.51645 * 106.98479 * 180.57198 * 6 5 4 9 9 H 1.09003 * 110.94194 * 133.88276 * 8 6 5 10 10 N 1.46498 * 110.94435 * 257.54183 * 8 6 5 11 11 C 1.34779 * 120.00353 * 201.98461 * 10 8 6 12 12 O 1.21554 * 119.99515 * 359.97438 * 11 10 8 13 13 C 1.47884 * 120.00422 * 179.97438 * 11 10 8 14 14 C 1.39925 * 120.02369 * 359.97438 * 13 11 10 15 15 C 1.38322 * 120.36078 * 179.70199 * 14 13 11 16 16 C 1.37761 * 120.41157 * 0.04292 * 15 14 13 17 17 C 1.40748 * 120.03704 * 359.95864 * 16 15 14 18 18 C 1.41438 * 120.17906 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99806 * 334.97202 * 18 17 16 20 20 C 1.39930 * 120.00493 * 154.97420 * 18 17 16 21 21 N 1.30832 * 119.99603 * 342.56113 * 20 18 17 22 22 Si 1.86797 * 120.00549 * 162.56127 * 20 18 17 23 23 H 1.48500 * 109.47074 * 59.99418 * 22 20 18 24 24 H 1.48495 * 109.47740 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46772 * 300.00144 * 22 20 18 26 26 C 1.38986 * 120.02711 * 179.72075 * 13 11 10 27 27 C 1.54705 * 101.93926 * 15.71027 * 8 6 5 28 28 O 1.36133 * 129.88196 * 179.57016 * 5 4 3 29 29 H 1.09003 * 109.46609 * 90.00157 * 1 2 3 30 30 H 1.08998 * 109.47227 * 209.99982 * 1 2 3 31 31 H 1.08995 * 109.46971 * 330.00278 * 1 2 3 32 32 H 1.08003 * 119.82427 * 0.19657 * 3 2 1 33 33 H 1.08003 * 119.88094 * 180.02562 * 4 3 2 34 34 H 1.08007 * 119.98091 * 179.62012 * 7 6 5 35 35 H 0.97004 * 120.00265 * 21.97692 * 10 8 6 36 36 H 1.08003 * 119.81716 * 359.72062 * 14 13 11 37 37 H 1.07997 * 119.79828 * 180.02562 * 15 14 13 38 38 H 1.07994 * 119.98266 * 179.97438 * 16 15 14 39 39 H 0.97002 * 119.99411 * 180.02562 * 21 20 18 40 40 H 1.07999 * 120.20456 * 0.27248 * 26 13 11 41 41 H 1.09004 * 110.74941 * 92.94777 * 27 8 6 42 42 H 1.09005 * 110.74996 * 216.11430 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5802 1.2017 -0.0037 5 6 4.2866 0.0013 -0.0086 6 6 3.5779 -1.1941 -0.0012 7 6 2.2012 -1.1967 -0.0004 8 6 4.5995 -2.3147 0.0056 9 1 4.3405 -3.0736 0.7440 10 7 4.7341 -2.9087 -1.3268 11 6 5.2233 -4.1573 -1.4618 12 8 5.5534 -4.7903 -0.4780 13 6 5.3587 -4.7571 -2.8068 14 6 4.9783 -4.0291 -3.9396 15 6 5.1077 -4.5810 -5.2013 16 6 5.6113 -5.8537 -5.3574 17 6 5.9991 -6.6012 -4.2297 18 6 6.5171 -7.9080 -4.3866 19 1 6.2594 -8.4898 -5.2592 20 6 7.3634 -8.4470 -3.4112 21 7 7.9486 -7.6597 -2.5455 22 14 7.6576 -10.2905 -3.3452 23 1 8.2543 -10.7428 -4.6276 24 1 8.5865 -10.6039 -2.2298 25 1 6.3663 -10.9902 -3.1261 26 6 5.8686 -6.0424 -2.9470 27 6 5.8919 -1.5672 0.4107 28 8 5.6296 -0.2211 -0.0205 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6600 2.1309 0.0032 33 1 4.1144 2.1404 -0.0032 34 1 1.6633 -2.1333 -0.0009 35 1 4.4709 -2.4035 -2.1120 36 1 4.5820 -3.0306 -3.8281 37 1 4.8117 -4.0109 -6.0694 38 1 5.7089 -6.2780 -6.3457 39 1 8.5356 -8.0334 -1.8697 40 1 6.1631 -6.6082 -2.0754 41 1 6.0377 -1.6052 1.4903 42 1 6.7563 -1.9806 -0.1090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362217517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:13 Heat of formation + Delta-G solvation = -26.309331 kcal Electronic energy + Delta-G solvation = -25938.035407 eV Core-core repulsion = 22233.683124 eV Total energy + Delta-G solvation = -3704.352283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40415 -39.08656 -37.91195 -37.02057 -34.51095 -33.74338 -32.11324 -31.55015 -30.13627 -29.47924 -28.54833 -26.78540 -25.34044 -23.77732 -22.75453 -21.61378 -21.15246 -20.81534 -19.62809 -17.90231 -17.53936 -16.74789 -16.50282 -16.01891 -15.37365 -15.10437 -14.96127 -14.64537 -14.22174 -14.16101 -13.82916 -13.73817 -13.69203 -13.24867 -12.91817 -12.65974 -12.52484 -12.36828 -12.31395 -11.96785 -11.80488 -11.65464 -11.18869 -11.11768 -11.06659 -10.84779 -10.76499 -10.53160 -10.09111 -9.72840 -9.35734 -9.23716 -9.02446 -8.81739 -8.17723 -7.67561 -7.55122 -6.82614 -4.44312 1.03548 1.19175 2.13863 2.79354 3.05926 3.07508 3.14102 3.15674 3.32083 3.74421 3.79954 3.89897 4.22970 4.48992 4.63209 4.68050 4.74759 5.00096 5.11107 5.17761 5.19526 5.40308 5.44595 5.53146 5.56320 5.57962 5.71376 5.83482 5.87240 6.05665 6.08152 6.24036 6.25075 6.36944 6.46282 6.68267 6.69234 6.94962 6.97462 7.04670 7.18040 7.34437 7.65705 7.71216 7.88168 8.01417 8.14667 8.46769 8.76471 8.79420 8.83568 10.12281 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.002828 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.214531 B = 9899.850397 C =10320.995369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.077 4.077 4 C -0.141 4.141 5 C 0.115 3.885 6 C -0.185 4.185 7 C -0.050 4.050 8 C 0.162 3.838 9 H 0.113 0.887 10 N -0.724 5.724 11 C 0.567 3.433 12 O -0.544 6.544 13 C -0.129 4.129 14 C -0.217 4.217 15 C -0.097 4.097 16 C -0.210 4.210 17 C 0.099 3.901 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.784 5.784 22 Si 0.911 3.089 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.090 4.090 27 C 0.039 3.961 28 O -0.301 6.301 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.403 0.597 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 14.135 6.005 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.123 4.123 3 C -0.096 4.096 4 C -0.160 4.160 5 C 0.069 3.931 6 C -0.187 4.187 7 C -0.069 4.069 8 C 0.057 3.943 9 H 0.131 0.869 10 N -0.377 5.377 11 C 0.358 3.642 12 O -0.422 6.422 13 C -0.132 4.132 14 C -0.237 4.237 15 C -0.115 4.115 16 C -0.230 4.230 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.408 5.408 22 Si 0.735 3.265 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.110 4.110 27 C -0.037 4.037 28 O -0.215 6.215 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.239 0.761 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.152 0.848 41 H 0.105 0.895 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.128 13.790 6.865 17.906 hybrid contribution 0.182 -0.614 -0.330 0.720 sum -8.946 13.176 6.535 17.215 Atomic orbital electron populations 1.20698 0.90707 1.02672 1.02344 1.19774 0.96245 0.92579 1.03748 1.20765 0.92708 0.97869 0.98226 1.20224 0.93458 0.95550 1.06782 1.19668 0.83576 0.94363 0.95491 1.20795 0.94665 0.94206 1.09027 1.20235 0.91687 0.98170 0.96781 1.20805 0.91491 0.94083 0.87954 0.86940 1.46014 1.67551 1.16683 1.07493 1.18943 0.75217 0.79804 0.90220 1.90701 1.49509 1.61654 1.40329 1.19412 1.06653 0.96941 0.90213 1.20347 1.11727 0.99020 0.92574 1.20437 1.00031 0.95656 0.95403 1.21116 1.09510 0.94941 0.97453 1.17595 0.89542 0.92765 0.90479 1.19558 1.24669 0.98886 1.05793 0.90081 1.25964 0.93985 1.00479 0.94164 1.69781 1.20307 1.37262 1.13483 0.86314 0.79179 0.82196 0.78780 1.18952 1.20212 1.18710 1.21628 0.97672 0.93052 0.98654 1.24369 0.99539 0.78911 1.00853 1.86850 1.19526 1.32885 1.82207 0.91238 0.91572 0.91637 0.85199 0.85370 0.85598 0.76108 0.89286 0.88856 0.88558 0.90373 0.84827 0.89475 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.02 36.01 0.36 -0.41 16 2 C -0.12 -1.20 5.89 -104.57 -0.62 -1.82 16 3 C -0.08 -0.72 9.68 -39.68 -0.38 -1.10 16 4 C -0.14 -1.53 10.06 -39.31 -0.40 -1.92 16 5 C 0.12 1.51 7.04 -38.92 -0.27 1.23 16 6 C -0.19 -2.42 5.81 -104.09 -0.61 -3.02 16 7 C -0.05 -0.58 9.69 -39.75 -0.39 -0.96 16 8 C 0.16 2.38 3.44 -67.72 -0.23 2.14 16 9 H 0.11 1.70 7.63 -51.93 -0.40 1.31 16 10 N -0.72 -12.21 5.12 -54.53 -0.28 -12.49 16 11 C 0.57 12.13 7.77 -12.31 -0.10 12.03 16 12 O -0.54 -13.09 16.02 5.32 0.09 -13.01 16 13 C -0.13 -3.02 5.87 -105.04 -0.62 -3.63 16 14 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 15 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 16 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 17 C 0.10 2.59 5.57 -106.87 -0.59 2.00 16 18 C -0.46 -11.99 9.05 -37.73 -0.34 -12.33 16 19 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 20 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 21 N -0.78 -20.58 10.97 55.55 0.61 -19.97 16 22 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 26 C -0.09 -2.37 8.23 -38.44 -0.32 -2.69 16 27 C 0.04 0.54 7.73 38.05 0.29 0.83 16 28 O -0.30 -4.29 11.10 -20.16 -0.22 -4.52 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.40 6.34 6.64 -40.82 -0.27 6.06 16 36 H 0.09 1.59 6.38 -52.48 -0.33 1.26 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 40 H 0.13 3.80 5.77 -52.49 -0.30 3.50 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.11 1.68 8.10 -51.93 -0.42 1.25 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -29.49 357.93 -9.96 -39.45 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.07 Total: 12.19 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -5.44 Total: -20.66 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.33 Total: -32.46 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.14 Total: -17.53 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.49 -9.96 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362217517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.143 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds