Wall clock time and date at job start Tue Mar 31 2020 13:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38281 * 120.12061 * 2 1 4 4 C 1.37928 * 120.35483 * 180.17594 * 3 2 1 5 5 C 1.39285 * 120.24283 * 0.05624 * 4 3 2 6 6 C 1.38975 * 118.85863 * 359.60013 * 5 4 3 7 7 C 1.37669 * 120.77266 * 0.54098 * 6 5 4 8 8 C 1.51645 * 106.98479 * 180.57198 * 6 5 4 9 9 H 1.09003 * 110.94194 * 133.88276 * 8 6 5 10 10 N 1.46498 * 110.94435 * 257.54183 * 8 6 5 11 11 C 1.34779 * 120.00353 * 201.98461 * 10 8 6 12 12 O 1.21554 * 119.99515 * 359.97438 * 11 10 8 13 13 C 1.47884 * 120.00422 * 179.97438 * 11 10 8 14 14 C 1.39925 * 120.02369 * 359.97438 * 13 11 10 15 15 C 1.38322 * 120.36078 * 179.70199 * 14 13 11 16 16 C 1.37761 * 120.41157 * 0.04292 * 15 14 13 17 17 C 1.40748 * 120.03704 * 359.95864 * 16 15 14 18 18 C 1.41438 * 120.17906 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99806 * 334.97202 * 18 17 16 20 20 C 1.39930 * 120.00493 * 154.97420 * 18 17 16 21 21 N 1.30832 * 119.99603 * 342.56113 * 20 18 17 22 22 Si 1.86797 * 120.00549 * 162.56127 * 20 18 17 23 23 H 1.48500 * 109.47074 * 59.99418 * 22 20 18 24 24 H 1.48495 * 109.47740 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46772 * 300.00144 * 22 20 18 26 26 C 1.38986 * 120.02711 * 179.72075 * 13 11 10 27 27 C 1.54705 * 101.93926 * 15.71027 * 8 6 5 28 28 O 1.36133 * 129.88196 * 179.57016 * 5 4 3 29 29 H 1.09003 * 109.46609 * 90.00157 * 1 2 3 30 30 H 1.08998 * 109.47227 * 209.99982 * 1 2 3 31 31 H 1.08995 * 109.46971 * 330.00278 * 1 2 3 32 32 H 1.08003 * 119.82427 * 0.19657 * 3 2 1 33 33 H 1.08003 * 119.88094 * 180.02562 * 4 3 2 34 34 H 1.08007 * 119.98091 * 179.62012 * 7 6 5 35 35 H 0.97004 * 120.00265 * 21.97692 * 10 8 6 36 36 H 1.08003 * 119.81716 * 359.72062 * 14 13 11 37 37 H 1.07997 * 119.79828 * 180.02562 * 15 14 13 38 38 H 1.07994 * 119.98266 * 179.97438 * 16 15 14 39 39 H 0.97002 * 119.99411 * 180.02562 * 21 20 18 40 40 H 1.07999 * 120.20456 * 0.27248 * 26 13 11 41 41 H 1.09004 * 110.74941 * 92.94777 * 27 8 6 42 42 H 1.09005 * 110.74996 * 216.11430 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5802 1.2017 -0.0037 5 6 4.2866 0.0013 -0.0086 6 6 3.5779 -1.1941 -0.0012 7 6 2.2012 -1.1967 -0.0004 8 6 4.5995 -2.3147 0.0056 9 1 4.3405 -3.0736 0.7440 10 7 4.7341 -2.9087 -1.3268 11 6 5.2233 -4.1573 -1.4618 12 8 5.5534 -4.7903 -0.4780 13 6 5.3587 -4.7571 -2.8068 14 6 4.9783 -4.0291 -3.9396 15 6 5.1077 -4.5810 -5.2013 16 6 5.6113 -5.8537 -5.3574 17 6 5.9991 -6.6012 -4.2297 18 6 6.5171 -7.9080 -4.3866 19 1 6.2594 -8.4898 -5.2592 20 6 7.3634 -8.4470 -3.4112 21 7 7.9486 -7.6597 -2.5455 22 14 7.6576 -10.2905 -3.3452 23 1 8.2543 -10.7428 -4.6276 24 1 8.5865 -10.6039 -2.2298 25 1 6.3663 -10.9902 -3.1261 26 6 5.8686 -6.0424 -2.9470 27 6 5.8919 -1.5672 0.4107 28 8 5.6296 -0.2211 -0.0205 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6600 2.1309 0.0032 33 1 4.1144 2.1404 -0.0032 34 1 1.6633 -2.1333 -0.0009 35 1 4.4709 -2.4035 -2.1120 36 1 4.5820 -3.0306 -3.8281 37 1 4.8117 -4.0109 -6.0694 38 1 5.7089 -6.2780 -6.3457 39 1 8.5356 -8.0334 -1.8697 40 1 6.1631 -6.6082 -2.0754 41 1 6.0377 -1.6052 1.4903 42 1 6.7563 -1.9806 -0.1090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362217517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:12 Heat of formation + Delta-G solvation = -42.549281 kcal Electronic energy + Delta-G solvation = -25938.739624 eV Core-core repulsion = 22233.683124 eV Total energy + Delta-G solvation = -3705.056500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45060 -40.71766 -38.92446 -38.68922 -35.97584 -35.55160 -32.91486 -32.83019 -31.66803 -31.29914 -29.73483 -27.55672 -27.20219 -25.09624 -23.96042 -22.92866 -22.60808 -21.99549 -21.27678 -19.60600 -18.69403 -17.97215 -17.74857 -17.39306 -16.99356 -16.52523 -16.33942 -15.93633 -15.74750 -15.42872 -15.07187 -14.94512 -14.61652 -14.52546 -14.42023 -14.30259 -13.79761 -13.54672 -13.29229 -13.08027 -12.96422 -12.93260 -12.81971 -12.60607 -12.54789 -12.22586 -12.00695 -11.90582 -11.73433 -11.53875 -11.08297 -10.93868 -10.35597 -9.97792 -9.51813 -9.41814 -9.06898 -8.68049 -6.40074 0.15462 0.31824 0.34478 0.98681 1.36051 1.47024 1.50067 1.99854 2.07401 2.18202 2.20149 2.74098 2.76488 3.19909 3.43044 3.67413 3.76642 3.93805 4.04346 4.06655 4.21874 4.36245 4.38254 4.40988 4.50639 4.55170 4.61550 4.76016 4.87742 4.91203 5.05283 5.06388 5.14583 5.15081 5.24879 5.30958 5.32140 5.36297 5.48842 5.60202 5.65119 5.82197 5.89144 6.02275 6.12891 6.25275 6.42003 6.60245 6.85916 6.91642 7.16767 8.28799 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.002828 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.214531 B = 9899.850397 C =10320.995369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.118 4.118 3 C -0.069 4.069 4 C -0.142 4.142 5 C 0.091 3.909 6 C -0.197 4.197 7 C -0.063 4.063 8 C 0.158 3.842 9 H 0.102 0.898 10 N -0.703 5.703 11 C 0.567 3.433 12 O -0.580 6.580 13 C -0.139 4.139 14 C -0.200 4.200 15 C -0.095 4.095 16 C -0.216 4.216 17 C 0.068 3.932 18 C -0.497 4.497 19 H 0.085 0.915 20 C 0.030 3.970 21 N -0.825 5.825 22 Si 0.983 3.017 23 H -0.253 1.253 24 H -0.272 1.272 25 H -0.260 1.260 26 C -0.126 4.126 27 C 0.043 3.957 28 O -0.314 6.314 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.410 0.590 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.287 0.713 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.877 16.641 5.303 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.160 4.160 5 C 0.046 3.954 6 C -0.198 4.198 7 C -0.081 4.081 8 C 0.053 3.947 9 H 0.120 0.880 10 N -0.355 5.355 11 C 0.357 3.643 12 O -0.461 6.461 13 C -0.142 4.142 14 C -0.219 4.219 15 C -0.113 4.113 16 C -0.236 4.236 17 C 0.066 3.934 18 C -0.526 4.526 19 H 0.103 0.897 20 C -0.185 4.185 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.176 1.176 24 H -0.196 1.196 25 H -0.185 1.185 26 C -0.147 4.147 27 C -0.033 4.033 28 O -0.228 6.228 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.183 0.817 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.248 0.752 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.276 16.351 6.144 20.791 hybrid contribution 0.669 -1.127 -0.132 1.318 sum -10.607 15.224 6.013 19.504 Atomic orbital electron populations 1.20771 0.88621 1.03835 1.03164 1.20142 0.97742 0.92025 1.01948 1.21196 0.92159 0.99129 0.96225 1.20580 0.94232 0.95396 1.05799 1.19950 0.82963 0.95284 0.97249 1.20653 0.95031 0.93183 1.10939 1.20430 0.91152 0.99304 0.97239 1.20919 0.93143 0.94444 0.86183 0.87981 1.45817 1.65649 1.15003 1.09061 1.18748 0.75439 0.80956 0.89135 1.90677 1.51317 1.62959 1.41125 1.19714 1.05942 0.96347 0.92209 1.20798 1.09316 1.00131 0.91691 1.20901 0.98468 0.94912 0.96978 1.21418 1.08955 0.95903 0.97275 1.17946 0.90518 0.93661 0.91301 1.19846 1.26085 0.99745 1.06936 0.89700 1.26859 0.93212 1.05114 0.93352 1.69882 1.21381 1.39285 1.14465 0.85233 0.79083 0.76080 0.79254 1.17646 1.19645 1.18459 1.21435 1.00727 0.94660 0.97876 1.24287 0.98300 0.78922 1.01819 1.86815 1.20627 1.32553 1.82784 0.90450 0.91368 0.89646 0.81714 0.83638 0.85400 0.75210 0.85365 0.84486 0.87214 0.90235 0.88090 0.87541 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.02 71.24 0.71 -0.42 16 2 C -0.12 -1.93 5.89 -19.83 -0.12 -2.05 16 3 C -0.07 -1.01 9.68 22.21 0.21 -0.80 16 4 C -0.14 -2.65 10.06 22.45 0.23 -2.42 16 5 C 0.09 2.25 7.04 22.70 0.16 2.41 16 6 C -0.20 -4.93 5.81 -19.52 -0.11 -5.05 16 7 C -0.06 -1.33 9.69 22.16 0.21 -1.12 16 8 C 0.16 4.67 3.44 45.13 0.16 4.82 16 9 H 0.10 3.22 7.63 -2.39 -0.02 3.20 16 10 N -0.70 -23.67 5.12 -444.71 -2.28 -25.95 16 11 C 0.57 24.97 7.77 86.80 0.67 25.64 16 12 O -0.58 -29.47 16.02 -3.89 -0.06 -29.53 16 13 C -0.14 -6.63 5.87 -20.14 -0.12 -6.75 16 14 C -0.20 -8.06 9.55 22.70 0.22 -7.84 16 15 C -0.09 -3.81 10.01 22.18 0.22 -3.59 16 16 C -0.22 -10.13 9.78 22.77 0.22 -9.90 16 17 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 18 C -0.50 -27.01 9.05 23.47 0.21 -26.80 16 19 H 0.08 4.34 7.90 -2.91 -0.02 4.31 16 20 C 0.03 1.55 5.14 85.25 0.44 1.99 16 21 N -0.82 -45.88 10.97 21.82 0.24 -45.64 16 22 Si 0.98 39.49 29.59 68.60 2.03 41.52 16 23 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 C -0.13 -7.02 8.23 23.01 0.19 -6.83 16 27 C 0.04 1.19 7.73 72.56 0.56 1.75 16 28 O -0.31 -8.77 11.10 -95.06 -1.06 -9.82 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.41 12.33 6.64 -92.71 -0.62 11.71 16 36 H 0.13 4.13 6.38 -2.91 -0.02 4.11 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 39 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 40 H 0.10 6.21 5.77 -2.91 -0.02 6.19 16 41 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.10 3.02 8.10 -2.38 -0.02 3.00 16 Total: -1.00 -68.34 357.93 3.28 -65.07 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: 0.45 Total: 37.74 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 3.95 Total: -33.39 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -2.04 Total: -71.59 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.12 Total: -39.35 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -68.34 3.28 -65.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362217517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.516 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds