Wall clock time and date at job start Tue Mar 31 2020 13:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 120.11587 * 2 1 4 4 C 1.37927 * 120.35087 * 179.86896 * 3 2 1 5 5 C 1.39292 * 120.24187 * 359.97438 * 4 3 2 6 6 C 1.38887 * 118.87229 * 0.30011 * 5 4 3 7 7 C 1.37741 * 120.78552 * 359.54645 * 6 5 4 8 8 C 1.51645 * 107.03015 * 179.53072 * 6 5 4 9 9 H 1.08996 * 110.94139 * 226.17500 * 8 6 5 10 10 N 1.46503 * 110.94217 * 102.47931 * 8 6 5 11 11 C 1.34773 * 119.99729 * 161.02569 * 10 8 6 12 12 O 1.21545 * 120.00014 * 0.02562 * 11 10 8 13 13 C 1.47889 * 119.99815 * 179.97438 * 11 10 8 14 14 C 1.39921 * 120.02423 * 0.02562 * 13 11 10 15 15 C 1.38331 * 120.35803 * 180.02562 * 14 13 11 16 16 C 1.37749 * 120.41021 * 359.97438 * 15 14 13 17 17 C 1.40747 * 120.04230 * 0.02562 * 16 15 14 18 18 C 1.41436 * 120.17847 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00566 * 24.35778 * 18 17 16 20 20 C 1.39948 * 120.00073 * 204.35866 * 18 17 16 21 21 N 1.30831 * 119.99775 * 17.73415 * 20 18 17 22 22 Si 1.86800 * 120.00094 * 197.73963 * 20 18 17 23 23 H 1.48499 * 109.47087 * 59.99333 * 22 20 18 24 24 H 1.48498 * 109.46917 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46750 * 299.99685 * 22 20 18 26 26 C 1.38992 * 120.02836 * 179.72698 * 13 11 10 27 27 C 1.54711 * 101.90471 * 344.32726 * 8 6 5 28 28 O 1.36133 * 129.87578 * 180.51546 * 5 4 3 29 29 H 1.08998 * 109.46697 * 90.00465 * 1 2 3 30 30 H 1.09002 * 109.47192 * 210.00428 * 1 2 3 31 31 H 1.09000 * 109.47402 * 330.00701 * 1 2 3 32 32 H 1.07995 * 119.82763 * 359.84054 * 3 2 1 33 33 H 1.08001 * 119.87918 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.00788 * 180.32891 * 7 6 5 35 35 H 0.96998 * 119.99685 * 341.02370 * 10 8 6 36 36 H 1.07994 * 119.82254 * 0.02562 * 14 13 11 37 37 H 1.07997 * 119.79265 * 179.97438 * 15 14 13 38 38 H 1.08003 * 119.97835 * 179.97438 * 16 15 14 39 39 H 0.96995 * 119.99685 * 180.02562 * 21 20 18 40 40 H 1.08010 * 120.19925 * 0.02562 * 26 13 11 41 41 H 1.09004 * 110.74833 * 143.68436 * 27 8 6 42 42 H 1.09000 * 110.74736 * 267.02782 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1962 0.0000 4 6 3.5801 1.2018 0.0027 5 6 4.2866 0.0014 0.0060 6 6 3.5786 -1.1934 0.0002 7 6 2.2012 -1.1967 0.0006 8 6 4.5996 -2.3147 -0.0063 9 1 4.3402 -3.0735 -0.7445 10 7 4.7342 -2.9079 1.3265 11 6 5.2790 -4.1326 1.4670 12 8 5.6590 -4.7446 0.4881 13 6 5.4155 -4.7312 2.8124 14 6 4.9787 -4.0268 3.9397 15 6 5.1035 -4.5799 5.2015 16 6 5.6585 -5.8303 5.3629 17 6 6.1036 -6.5539 4.2407 18 6 6.6734 -7.8382 4.4031 19 1 6.4295 -8.4313 5.2720 20 6 7.5532 -8.3405 3.4376 21 7 8.1203 -7.5278 2.5834 22 14 7.9179 -10.1712 3.3686 23 1 6.6573 -10.9184 3.1286 24 1 8.8727 -10.4444 2.2645 25 1 8.5134 -10.6062 4.6576 26 6 5.9721 -5.9965 2.9575 27 6 5.8919 -1.5672 -0.4120 28 8 5.6296 -0.2209 0.0184 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6600 2.1309 -0.0026 33 1 4.1143 2.1405 0.0023 34 1 1.6633 -2.1332 0.0014 35 1 4.4313 -2.4192 2.1077 36 1 4.5418 -3.0460 3.8242 37 1 4.7637 -4.0280 6.0653 38 1 5.7530 -6.2553 6.3513 39 1 8.7298 -7.8760 1.9140 40 1 6.3066 -6.5457 2.0897 41 1 6.7559 -1.9782 0.1103 42 1 6.0376 -1.6060 -1.4915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362217519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:17 Heat of formation + Delta-G solvation = -26.202323 kcal Electronic energy + Delta-G solvation = -25941.460708 eV Core-core repulsion = 22237.113065 eV Total energy + Delta-G solvation = -3704.347643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40839 -39.08560 -37.91103 -37.01811 -34.51135 -33.74543 -32.11630 -31.54868 -30.13644 -29.47676 -28.54126 -26.78802 -25.34024 -23.78321 -22.75527 -21.61167 -21.15384 -20.81454 -19.61397 -17.89744 -17.53889 -16.75484 -16.51270 -16.01155 -15.37143 -15.10669 -14.95860 -14.64165 -14.24244 -14.13217 -13.82858 -13.73827 -13.70027 -13.24843 -12.92793 -12.65991 -12.52126 -12.36169 -12.30679 -11.98239 -11.80219 -11.65554 -11.18842 -11.11733 -11.07354 -10.83931 -10.76353 -10.53143 -10.09091 -9.72723 -9.35714 -9.23451 -9.02149 -8.81644 -8.17998 -7.67428 -7.55353 -6.82926 -4.44178 1.03207 1.18914 2.14207 2.79422 3.05812 3.07463 3.14331 3.16360 3.31857 3.74854 3.79853 3.89730 4.22420 4.48793 4.62958 4.67917 4.74565 5.00343 5.11112 5.18323 5.19550 5.39597 5.44163 5.53508 5.57075 5.58590 5.71116 5.83212 5.87029 6.05821 6.07933 6.23895 6.25308 6.36608 6.46193 6.68428 6.69390 6.95095 6.97701 7.04773 7.18107 7.34534 7.65987 7.71501 7.88458 8.01598 8.14759 8.46872 8.76430 8.79595 8.83757 10.11872 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002830 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.329786 B = 9891.604369 C =10352.784650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.077 4.077 4 C -0.142 4.142 5 C 0.116 3.884 6 C -0.186 4.186 7 C -0.050 4.050 8 C 0.163 3.837 9 H 0.111 0.889 10 N -0.724 5.724 11 C 0.567 3.433 12 O -0.544 6.544 13 C -0.129 4.129 14 C -0.217 4.217 15 C -0.097 4.097 16 C -0.211 4.211 17 C 0.099 3.901 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.911 3.089 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.091 4.091 27 C 0.040 3.960 28 O -0.301 6.301 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.403 0.597 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.134 0.866 41 H 0.114 0.886 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 13.876 -6.112 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C -0.095 4.095 4 C -0.160 4.160 5 C 0.070 3.930 6 C -0.187 4.187 7 C -0.069 4.069 8 C 0.058 3.942 9 H 0.129 0.871 10 N -0.378 5.378 11 C 0.358 3.642 12 O -0.422 6.422 13 C -0.132 4.132 14 C -0.237 4.237 15 C -0.115 4.115 16 C -0.231 4.231 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.408 5.408 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.189 1.189 26 C -0.111 4.111 27 C -0.036 4.036 28 O -0.215 6.215 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.239 0.761 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.488 13.556 -6.963 17.952 hybrid contribution 0.187 -0.612 0.316 0.713 sum -9.301 12.945 -6.647 17.270 Atomic orbital electron populations 1.20698 0.90706 1.02830 1.02191 1.19774 0.96245 0.92579 1.03776 1.20767 0.92709 0.97875 0.98186 1.20227 0.93461 0.95558 1.06776 1.19648 0.83601 0.94356 0.95413 1.20780 0.94651 0.94190 1.09119 1.20253 0.91663 0.98172 0.96793 1.20799 0.91524 0.94022 0.87885 0.87110 1.46020 1.65072 1.18979 1.07696 1.18938 0.75520 0.79573 0.90167 1.90699 1.49073 1.61740 1.40670 1.19414 1.06182 0.97322 0.90263 1.20345 1.11060 0.99636 0.92692 1.20434 0.99868 0.95795 0.95401 1.21108 1.08983 0.95540 0.97448 1.17590 0.89703 0.92625 0.90460 1.19565 1.22713 1.00289 1.06298 0.90075 1.25973 0.94244 1.00236 0.94140 1.69780 1.20221 1.36799 1.13950 0.86316 0.79126 0.82233 0.78809 1.18709 1.20207 1.18940 1.21634 0.97624 0.93255 0.98587 1.24374 0.99553 0.78851 1.00849 1.86855 1.19508 1.32899 1.82207 0.91385 0.91491 0.91573 0.85196 0.85361 0.85584 0.76102 0.89294 0.88864 0.88569 0.90360 0.84808 0.86776 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.02 36.01 0.36 -0.40 16 2 C -0.12 -1.20 5.89 -104.56 -0.62 -1.81 16 3 C -0.08 -0.71 9.68 -39.68 -0.38 -1.10 16 4 C -0.14 -1.53 10.06 -39.30 -0.40 -1.92 16 5 C 0.12 1.52 7.04 -38.95 -0.27 1.25 16 6 C -0.19 -2.42 5.80 -104.10 -0.60 -3.02 16 7 C -0.05 -0.57 9.70 -39.72 -0.39 -0.96 16 8 C 0.16 2.39 3.40 -67.71 -0.23 2.16 16 9 H 0.11 1.67 7.72 -51.93 -0.40 1.27 16 10 N -0.72 -12.23 5.13 -54.53 -0.28 -12.51 16 11 C 0.57 12.13 7.77 -12.31 -0.10 12.03 16 12 O -0.54 -13.08 16.07 5.33 0.09 -13.00 16 13 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 14 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 15 C -0.10 -2.07 10.01 -39.73 -0.40 -2.46 16 16 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 17 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 18 C -0.46 -11.98 9.05 -37.72 -0.34 -12.33 16 19 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 20 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 21 N -0.78 -20.55 10.96 55.55 0.61 -19.94 16 22 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 C -0.09 -2.40 8.24 -38.44 -0.32 -2.71 16 27 C 0.04 0.55 7.73 38.06 0.29 0.85 16 28 O -0.30 -4.33 11.10 -20.16 -0.22 -4.55 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.40 6.34 6.62 -40.82 -0.27 6.07 16 36 H 0.09 1.59 6.38 -52.49 -0.33 1.26 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 39 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 40 H 0.13 3.80 5.75 -52.48 -0.30 3.50 16 41 H 0.11 1.71 8.10 -51.93 -0.42 1.29 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -29.49 357.98 -9.96 -39.45 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.08 Total: 12.19 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -5.44 Total: -20.63 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.33 Total: -32.45 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.14 Total: -17.55 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.49 -9.96 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362217519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.249 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds