Wall clock time and date at job start Tue Mar 31 2020 13:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 120.11587 * 2 1 4 4 C 1.37927 * 120.35087 * 179.86896 * 3 2 1 5 5 C 1.39292 * 120.24187 * 359.97438 * 4 3 2 6 6 C 1.38887 * 118.87229 * 0.30011 * 5 4 3 7 7 C 1.37741 * 120.78552 * 359.54645 * 6 5 4 8 8 C 1.51645 * 107.03015 * 179.53072 * 6 5 4 9 9 H 1.08996 * 110.94139 * 226.17500 * 8 6 5 10 10 N 1.46503 * 110.94217 * 102.47931 * 8 6 5 11 11 C 1.34773 * 119.99729 * 161.02569 * 10 8 6 12 12 O 1.21545 * 120.00014 * 0.02562 * 11 10 8 13 13 C 1.47889 * 119.99815 * 179.97438 * 11 10 8 14 14 C 1.39921 * 120.02423 * 0.02562 * 13 11 10 15 15 C 1.38331 * 120.35803 * 180.02562 * 14 13 11 16 16 C 1.37749 * 120.41021 * 359.97438 * 15 14 13 17 17 C 1.40747 * 120.04230 * 0.02562 * 16 15 14 18 18 C 1.41436 * 120.17847 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00566 * 24.35778 * 18 17 16 20 20 C 1.39948 * 120.00073 * 204.35866 * 18 17 16 21 21 N 1.30831 * 119.99775 * 17.73415 * 20 18 17 22 22 Si 1.86800 * 120.00094 * 197.73963 * 20 18 17 23 23 H 1.48499 * 109.47087 * 59.99333 * 22 20 18 24 24 H 1.48498 * 109.46917 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46750 * 299.99685 * 22 20 18 26 26 C 1.38992 * 120.02836 * 179.72698 * 13 11 10 27 27 C 1.54711 * 101.90471 * 344.32726 * 8 6 5 28 28 O 1.36133 * 129.87578 * 180.51546 * 5 4 3 29 29 H 1.08998 * 109.46697 * 90.00465 * 1 2 3 30 30 H 1.09002 * 109.47192 * 210.00428 * 1 2 3 31 31 H 1.09000 * 109.47402 * 330.00701 * 1 2 3 32 32 H 1.07995 * 119.82763 * 359.84054 * 3 2 1 33 33 H 1.08001 * 119.87918 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.00788 * 180.32891 * 7 6 5 35 35 H 0.96998 * 119.99685 * 341.02370 * 10 8 6 36 36 H 1.07994 * 119.82254 * 0.02562 * 14 13 11 37 37 H 1.07997 * 119.79265 * 179.97438 * 15 14 13 38 38 H 1.08003 * 119.97835 * 179.97438 * 16 15 14 39 39 H 0.96995 * 119.99685 * 180.02562 * 21 20 18 40 40 H 1.08010 * 120.19925 * 0.02562 * 26 13 11 41 41 H 1.09004 * 110.74833 * 143.68436 * 27 8 6 42 42 H 1.09000 * 110.74736 * 267.02782 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1962 0.0000 4 6 3.5801 1.2018 0.0027 5 6 4.2866 0.0014 0.0060 6 6 3.5786 -1.1934 0.0002 7 6 2.2012 -1.1967 0.0006 8 6 4.5996 -2.3147 -0.0063 9 1 4.3402 -3.0735 -0.7445 10 7 4.7342 -2.9079 1.3265 11 6 5.2790 -4.1326 1.4670 12 8 5.6590 -4.7446 0.4881 13 6 5.4155 -4.7312 2.8124 14 6 4.9787 -4.0268 3.9397 15 6 5.1035 -4.5799 5.2015 16 6 5.6585 -5.8303 5.3629 17 6 6.1036 -6.5539 4.2407 18 6 6.6734 -7.8382 4.4031 19 1 6.4295 -8.4313 5.2720 20 6 7.5532 -8.3405 3.4376 21 7 8.1203 -7.5278 2.5834 22 14 7.9179 -10.1712 3.3686 23 1 6.6573 -10.9184 3.1286 24 1 8.8727 -10.4444 2.2645 25 1 8.5134 -10.6062 4.6576 26 6 5.9721 -5.9965 2.9575 27 6 5.8919 -1.5672 -0.4120 28 8 5.6296 -0.2209 0.0184 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6600 2.1309 -0.0026 33 1 4.1143 2.1405 0.0023 34 1 1.6633 -2.1332 0.0014 35 1 4.4313 -2.4192 2.1077 36 1 4.5418 -3.0460 3.8242 37 1 4.7637 -4.0280 6.0653 38 1 5.7530 -6.2553 6.3513 39 1 8.7298 -7.8760 1.9140 40 1 6.3066 -6.5457 2.0897 41 1 6.7559 -1.9782 0.1103 42 1 6.0376 -1.6060 -1.4915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362217519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:16 Heat of formation + Delta-G solvation = -42.457221 kcal Electronic energy + Delta-G solvation = -25942.165573 eV Core-core repulsion = 22237.113065 eV Total energy + Delta-G solvation = -3705.052508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.45754 -40.71605 -38.92558 -38.68640 -35.97758 -35.55400 -32.91526 -32.83027 -31.66812 -31.29673 -29.73156 -27.55626 -27.20215 -25.10516 -23.95941 -22.92762 -22.61087 -21.99803 -21.26070 -19.60280 -18.69566 -17.96973 -17.76976 -17.38559 -16.99857 -16.52530 -16.33975 -15.93088 -15.74753 -15.42573 -15.07175 -14.93713 -14.63202 -14.50627 -14.42070 -14.30167 -13.80538 -13.54752 -13.30292 -13.08803 -12.96415 -12.92453 -12.81884 -12.59839 -12.54817 -12.22571 -12.01659 -11.91092 -11.72005 -11.53794 -11.08107 -10.93583 -10.35523 -9.97805 -9.51898 -9.42010 -9.07108 -8.68359 -6.39933 0.15379 0.31949 0.34523 0.98759 1.35989 1.47139 1.50086 2.00055 2.07549 2.18136 2.20455 2.74002 2.76211 3.19014 3.42687 3.67701 3.76819 3.94295 4.04457 4.06458 4.21812 4.36115 4.38254 4.41056 4.50396 4.55384 4.61559 4.75976 4.87817 4.91317 5.05361 5.06434 5.14753 5.15276 5.24931 5.31022 5.32247 5.36219 5.48874 5.60233 5.65198 5.82401 5.89369 6.02400 6.12775 6.25313 6.42174 6.60395 6.85781 6.91758 7.16942 8.28407 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002830 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.329786 B = 9891.604369 C =10352.784650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.118 4.118 3 C -0.069 4.069 4 C -0.142 4.142 5 C 0.091 3.909 6 C -0.197 4.197 7 C -0.062 4.062 8 C 0.159 3.841 9 H 0.102 0.898 10 N -0.703 5.703 11 C 0.566 3.434 12 O -0.580 6.580 13 C -0.139 4.139 14 C -0.200 4.200 15 C -0.094 4.094 16 C -0.216 4.216 17 C 0.068 3.932 18 C -0.497 4.497 19 H 0.085 0.915 20 C 0.030 3.970 21 N -0.824 5.824 22 Si 0.983 3.017 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.252 1.252 26 C -0.127 4.127 27 C 0.043 3.957 28 O -0.314 6.314 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.410 0.590 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.287 0.713 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 16.301 -5.427 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.160 4.160 5 C 0.046 3.954 6 C -0.198 4.198 7 C -0.081 4.081 8 C 0.054 3.946 9 H 0.120 0.880 10 N -0.356 5.356 11 C 0.357 3.643 12 O -0.460 6.460 13 C -0.142 4.142 14 C -0.220 4.220 15 C -0.112 4.112 16 C -0.236 4.236 17 C 0.066 3.934 18 C -0.526 4.526 19 H 0.103 0.897 20 C -0.185 4.185 21 N -0.449 5.449 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.148 4.148 27 C -0.033 4.033 28 O -0.229 6.229 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.183 0.817 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.248 0.752 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.774 16.034 -6.259 20.853 hybrid contribution 0.707 -1.103 0.120 1.316 sum -11.066 14.930 -6.138 19.572 Atomic orbital electron populations 1.20772 0.88593 1.03806 1.03213 1.20146 0.97753 0.92018 1.01929 1.21197 0.92135 0.99157 0.96197 1.20580 0.94251 0.95380 1.05830 1.19936 0.82958 0.95322 0.97233 1.20637 0.95034 0.93109 1.11017 1.20452 0.91084 0.99341 0.97187 1.20912 0.93102 0.94418 0.86141 0.88018 1.45824 1.63185 1.17294 1.09258 1.18743 0.75776 0.80687 0.89089 1.90675 1.50850 1.63057 1.41457 1.19718 1.05496 0.96718 0.92255 1.20796 1.08795 1.00613 0.91813 1.20899 0.98392 0.94991 0.96949 1.21410 1.08469 0.96460 0.97282 1.17943 0.90687 0.93520 0.91272 1.19853 1.24089 1.01170 1.07458 0.89690 1.26869 0.93559 1.04787 0.93322 1.69880 1.21254 1.38853 1.14941 0.85233 0.78956 0.76177 0.79288 1.18458 1.19642 1.17627 1.21443 1.00579 0.94946 0.97833 1.24286 0.98332 0.78911 1.01779 1.86818 1.20679 1.32553 1.82807 0.90247 0.91441 0.89749 0.81721 0.83679 0.85263 0.75203 0.85375 0.84495 0.87224 0.90220 0.88055 0.88489 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.02 71.24 0.71 -0.40 16 2 C -0.12 -1.91 5.89 -19.83 -0.12 -2.03 16 3 C -0.07 -1.01 9.68 22.21 0.21 -0.79 16 4 C -0.14 -2.67 10.06 22.45 0.23 -2.44 16 5 C 0.09 2.26 7.04 22.68 0.16 2.42 16 6 C -0.20 -4.91 5.80 -19.53 -0.11 -5.03 16 7 C -0.06 -1.30 9.70 22.18 0.22 -1.09 16 8 C 0.16 4.70 3.40 45.13 0.15 4.85 16 9 H 0.10 3.18 7.72 -2.39 -0.02 3.16 16 10 N -0.70 -23.71 5.13 -444.71 -2.28 -25.99 16 11 C 0.57 24.97 7.77 86.80 0.67 25.65 16 12 O -0.58 -29.44 16.07 -3.86 -0.06 -29.50 16 13 C -0.14 -6.62 5.87 -20.13 -0.12 -6.74 16 14 C -0.20 -8.10 9.55 22.70 0.22 -7.89 16 15 C -0.09 -3.80 10.01 22.18 0.22 -3.58 16 16 C -0.22 -10.17 9.78 22.77 0.22 -9.95 16 17 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 18 C -0.50 -27.00 9.05 23.47 0.21 -26.78 16 19 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 20 C 0.03 1.56 5.14 85.26 0.44 2.00 16 21 N -0.82 -45.83 10.96 21.83 0.24 -45.60 16 22 Si 0.98 39.47 29.59 68.60 2.03 41.50 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 26 C -0.13 -7.08 8.24 23.01 0.19 -6.89 16 27 C 0.04 1.21 7.73 72.57 0.56 1.77 16 28 O -0.31 -8.90 11.10 -95.07 -1.06 -9.95 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.41 12.34 6.62 -92.71 -0.61 11.72 16 36 H 0.13 4.13 6.38 -2.91 -0.02 4.11 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 39 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 40 H 0.10 6.23 5.75 -2.91 -0.02 6.22 16 41 H 0.10 3.04 8.10 -2.39 -0.02 3.02 16 42 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -68.37 357.98 3.27 -65.10 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.45 Total: 37.76 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 3.95 Total: -33.33 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -2.04 Total: -71.58 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -1.12 Total: -39.45 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -68.37 3.27 -65.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362217519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.646 kcal (2) G-P(sol) polarization free energy of solvation -68.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds