Wall clock time and date at job start Tue Mar 31 2020 13:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00541 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99489 * 180.02562 * 13 12 11 16 16 C 1.46978 * 127.03344 * 0.02638 * 15 13 12 17 17 C 1.50771 * 106.56799 * 180.02562 * 16 15 13 18 18 O 1.21275 * 125.43159 * 179.97438 * 17 16 15 19 19 N 1.34308 * 109.14537 * 0.02562 * 17 16 15 20 20 C 1.46502 * 124.85309 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47083 * 90.01905 * 20 19 17 22 22 F 1.39899 * 109.46790 * 60.00337 * 21 20 19 23 23 F 1.39902 * 109.46955 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47191 * 300.00198 * 21 20 19 25 25 C 1.46224 * 110.29406 * 359.72741 * 19 17 16 26 26 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 28 28 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 29 29 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 30 30 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 31 31 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 33 33 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 34 34 H 1.09000 * 110.03883 * 299.27577 * 16 15 13 35 35 H 1.09002 * 110.03806 * 60.72635 * 16 15 13 36 36 H 1.08993 * 109.47231 * 210.02373 * 20 19 17 37 37 H 1.09005 * 109.46671 * 330.02454 * 20 19 17 38 38 H 1.08997 * 109.88452 * 240.71412 * 25 19 17 39 39 H 1.08997 * 109.62112 * 120.01718 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 1.9832 -7.3712 0.0015 14 8 0.7878 -7.5935 0.0024 15 7 2.8591 -8.3956 0.0014 16 6 4.3261 -8.3059 0.0010 17 6 4.8434 -9.7221 0.0005 18 8 6.0128 -10.0435 -0.0004 19 7 3.8028 -10.5712 0.0001 20 6 3.9141 -12.0320 -0.0010 21 6 3.9526 -12.5416 1.4411 22 9 2.7781 -12.1640 2.1006 23 9 4.0584 -13.9366 1.4400 24 9 5.0560 -11.9903 2.1012 25 6 2.5428 -9.8292 0.0068 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6042 -0.8894 31 1 0.8534 -5.0451 -0.8886 32 1 0.8541 -5.0445 0.8914 33 1 3.3861 -5.9233 0.0002 34 1 4.6681 -7.7835 -0.8924 35 1 4.6686 -7.7832 0.8940 36 1 3.0545 -12.4615 -0.5154 37 1 4.8293 -12.3262 -0.5149 38 1 1.9715 -10.0768 0.9014 39 1 1.9642 -10.0824 -0.8816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362843531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:09 Heat of formation + Delta-G solvation = -202.470363 kcal Electronic energy + Delta-G solvation = -27032.662868 eV Core-core repulsion = 22367.965666 eV Total energy + Delta-G solvation = -4664.697202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.57046 -48.11278 -48.03284 -41.52187 -39.61021 -37.28765 -35.53557 -35.06815 -33.35477 -31.39901 -30.30976 -28.95411 -27.04559 -25.42629 -24.01797 -23.01544 -21.01286 -20.83900 -20.33796 -19.10838 -18.99710 -18.66552 -18.05303 -17.09197 -16.54207 -16.46045 -16.32007 -15.88869 -15.40947 -14.97314 -14.93274 -14.63552 -14.50778 -14.44230 -14.37413 -14.21117 -14.19294 -14.08081 -13.92130 -13.37685 -13.28511 -13.19836 -12.67792 -12.32655 -11.87375 -11.81697 -10.93691 -10.91695 -10.76352 -10.62797 -10.37087 -10.05522 -9.92694 -9.51555 -9.23502 -9.16976 -8.79465 -8.40248 -6.04953 -4.08191 1.50105 1.68054 2.23714 2.31519 2.99760 3.21862 3.28912 3.32826 3.35628 3.38137 3.59729 3.67717 3.75158 4.21871 4.41869 4.44411 4.62524 4.72928 4.78490 4.87301 5.16204 5.31019 5.32797 5.59722 5.71123 6.08387 6.15721 6.32814 6.53263 6.58322 6.80848 6.93999 7.24642 7.59526 7.71409 7.74068 7.93412 8.33365 8.39394 8.98397 9.56262 11.06261 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.002017 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.377274 B =13876.387025 C =14315.154656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.134 3.866 12 N -0.732 5.732 13 C 0.735 3.265 14 O -0.574 6.574 15 N -0.648 5.648 16 C 0.070 3.930 17 C 0.527 3.473 18 O -0.494 6.494 19 N -0.631 5.631 20 C 0.097 3.903 21 C 0.432 3.568 22 F -0.179 7.179 23 F -0.178 7.178 24 F -0.174 7.174 25 C 0.354 3.646 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.396 0.604 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.088 0.912 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 -27.375 -0.629 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.011 3.989 12 N -0.386 5.386 13 C 0.437 3.563 14 O -0.450 6.450 15 N -0.392 5.392 16 C -0.057 4.057 17 C 0.314 3.686 18 O -0.366 6.366 19 N -0.367 5.367 20 C -0.028 4.028 21 C 0.376 3.624 22 F -0.161 7.161 23 F -0.160 7.160 24 F -0.156 7.156 25 C 0.146 3.854 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.230 0.770 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.105 0.895 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.230 -27.524 -0.602 28.734 hybrid contribution 0.915 0.872 0.313 1.302 sum 9.144 -26.652 -0.289 28.179 Atomic orbital electron populations 1.69962 1.06052 1.26738 1.50467 1.25031 0.94866 0.99327 0.95249 0.86578 0.79800 0.83410 0.78102 1.20658 1.21205 1.19893 1.21189 0.92992 0.90901 1.51050 0.92631 1.19026 0.93822 0.90747 0.97754 1.21908 0.99870 0.93126 1.01000 1.21639 0.91172 0.83793 1.02293 1.45407 1.10937 1.03819 1.78414 1.15125 0.83574 0.79624 0.78011 1.90983 1.12949 1.83296 1.57801 1.47190 1.05519 1.05298 1.81185 1.21902 0.81903 0.95791 1.06085 1.20650 0.85336 0.87785 0.74835 1.90838 1.16230 1.81388 1.48161 1.48184 1.08688 1.04968 1.74845 1.22489 1.09336 0.79839 0.91140 1.21238 0.74140 0.75776 0.91261 1.93221 1.48293 1.90987 1.83579 1.93215 1.95875 1.29931 1.96955 1.93254 1.53800 1.85205 1.83330 1.21153 0.83249 0.77227 1.03813 0.92895 0.96200 0.96176 0.92631 0.92631 0.91533 0.91528 0.77016 0.86833 0.86912 0.84823 0.84712 0.89461 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.21 5.27 -26.74 -0.14 -2.35 16 11 C 0.13 2.16 5.67 -4.04 -0.02 2.14 16 12 N -0.73 -9.40 5.53 -65.22 -0.36 -9.76 16 13 C 0.73 9.84 8.53 -86.92 -0.74 9.09 16 14 O -0.57 -9.94 16.74 5.29 0.09 -9.85 16 15 N -0.65 -6.22 3.36 -184.00 -0.62 -6.84 16 16 C 0.07 0.52 6.36 -4.90 -0.03 0.48 16 17 C 0.53 4.55 7.86 -11.16 -0.09 4.47 16 18 O -0.49 -5.72 17.67 5.56 0.10 -5.62 16 19 N -0.63 -4.27 2.80 -177.57 -0.50 -4.77 16 20 C 0.10 0.42 5.96 -4.04 -0.02 0.40 16 21 C 0.43 2.98 3.29 37.16 0.12 3.10 16 22 F -0.18 -1.44 16.61 2.25 0.04 -1.40 16 23 F -0.18 -1.22 17.32 2.25 0.04 -1.18 16 24 F -0.17 -1.69 16.98 2.25 0.04 -1.65 16 25 C 0.35 2.68 7.47 -63.72 -0.48 2.21 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.40 4.01 7.56 -40.82 -0.31 3.70 16 34 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.13 0.48 7.98 -51.93 -0.41 0.06 16 38 H 0.09 0.70 7.60 -51.93 -0.39 0.30 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -34.51 351.70 -7.00 -41.51 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.89 Total: -3.21 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -1.95 Total: 6.95 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.74 Total: -46.96 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.19 Total: -15.47 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.11 Total: -4.23 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.51 -7.00 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362843531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.963 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds