Wall clock time and date at job start Tue Mar 31 2020 13:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00541 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99489 * 180.02562 * 13 12 11 16 16 C 1.46978 * 127.03344 * 0.02638 * 15 13 12 17 17 C 1.50771 * 106.56799 * 180.02562 * 16 15 13 18 18 O 1.21275 * 125.43159 * 179.97438 * 17 16 15 19 19 N 1.34308 * 109.14537 * 0.02562 * 17 16 15 20 20 C 1.46502 * 124.85309 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47083 * 90.01905 * 20 19 17 22 22 F 1.39899 * 109.46790 * 60.00337 * 21 20 19 23 23 F 1.39902 * 109.46955 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47191 * 300.00198 * 21 20 19 25 25 C 1.46224 * 110.29406 * 359.72741 * 19 17 16 26 26 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 28 28 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 29 29 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 30 30 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 31 31 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 33 33 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 34 34 H 1.09000 * 110.03883 * 299.27577 * 16 15 13 35 35 H 1.09002 * 110.03806 * 60.72635 * 16 15 13 36 36 H 1.08993 * 109.47231 * 210.02373 * 20 19 17 37 37 H 1.09005 * 109.46671 * 330.02454 * 20 19 17 38 38 H 1.08997 * 109.88452 * 240.71412 * 25 19 17 39 39 H 1.08997 * 109.62112 * 120.01718 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 1.9832 -7.3712 0.0015 14 8 0.7878 -7.5935 0.0024 15 7 2.8591 -8.3956 0.0014 16 6 4.3261 -8.3059 0.0010 17 6 4.8434 -9.7221 0.0005 18 8 6.0128 -10.0435 -0.0004 19 7 3.8028 -10.5712 0.0001 20 6 3.9141 -12.0320 -0.0010 21 6 3.9526 -12.5416 1.4411 22 9 2.7781 -12.1640 2.1006 23 9 4.0584 -13.9366 1.4400 24 9 5.0560 -11.9903 2.1012 25 6 2.5428 -9.8292 0.0068 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6042 -0.8894 31 1 0.8534 -5.0451 -0.8886 32 1 0.8541 -5.0445 0.8914 33 1 3.3861 -5.9233 0.0002 34 1 4.6681 -7.7835 -0.8924 35 1 4.6686 -7.7832 0.8940 36 1 3.0545 -12.4615 -0.5154 37 1 4.8293 -12.3262 -0.5149 38 1 1.9715 -10.0768 0.9014 39 1 1.9642 -10.0824 -0.8816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362843531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:08 Heat of formation + Delta-G solvation = -225.924004 kcal Electronic energy + Delta-G solvation = -27033.679895 eV Core-core repulsion = 22367.965666 eV Total energy + Delta-G solvation = -4665.714228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.15200 -48.67487 -48.66565 -42.24724 -40.59206 -38.08101 -36.92783 -35.79514 -35.12272 -32.98881 -31.07860 -29.59509 -28.60204 -26.44365 -24.69960 -24.49686 -22.29148 -21.67320 -21.44877 -19.75596 -19.59942 -19.42198 -18.78810 -18.44441 -17.80270 -17.33692 -16.99430 -16.83870 -16.51175 -16.43055 -15.65648 -15.56676 -15.53302 -15.30872 -15.25574 -15.08799 -14.84660 -14.80234 -14.60358 -14.24924 -14.14480 -13.99901 -13.66674 -13.64060 -13.43978 -13.22875 -12.73574 -12.52373 -12.34712 -11.85527 -11.63663 -11.46276 -11.28976 -11.14614 -10.75262 -10.52415 -10.24960 -9.68030 -8.17125 -6.27837 0.84323 1.02980 1.43801 1.44557 1.51763 1.55544 1.78476 1.95434 2.43408 2.72917 2.75002 2.85191 3.02463 3.15829 3.17000 3.72253 4.07789 4.14220 4.19078 4.22254 4.24883 4.26329 4.30230 4.54751 4.61018 4.74518 5.00348 5.00442 5.21320 5.42663 5.52886 5.56333 5.75879 5.77415 5.88347 6.25688 6.60109 6.76805 6.90354 7.36559 7.41665 8.94793 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.002017 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.377274 B =13876.387025 C =14315.154656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.149 3.851 12 N -0.722 5.722 13 C 0.738 3.262 14 O -0.617 6.617 15 N -0.644 5.644 16 C 0.068 3.932 17 C 0.527 3.473 18 O -0.526 6.526 19 N -0.624 5.624 20 C 0.098 3.902 21 C 0.428 3.572 22 F -0.188 7.188 23 F -0.178 7.178 24 F -0.194 7.194 25 C 0.352 3.648 26 H 0.262 0.738 27 H -0.006 1.006 28 H -0.007 1.007 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.412 0.588 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.173 0.827 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 -27.939 -1.213 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.025 3.975 12 N -0.377 5.377 13 C 0.439 3.561 14 O -0.497 6.497 15 N -0.385 5.385 16 C -0.057 4.057 17 C 0.315 3.685 18 O -0.401 6.401 19 N -0.359 5.359 20 C -0.026 4.026 21 C 0.372 3.628 22 F -0.169 7.169 23 F -0.160 7.160 24 F -0.176 7.176 25 C 0.144 3.856 26 H 0.071 0.929 27 H 0.013 0.987 28 H 0.012 0.988 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.249 0.751 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.190 0.810 37 H 0.165 0.835 38 H 0.103 0.897 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.986 -28.137 -1.185 29.880 hybrid contribution 0.370 0.948 0.524 1.145 sum 10.356 -27.189 -0.661 29.102 Atomic orbital electron populations 1.70106 1.07857 1.27706 1.51817 1.25997 0.95730 1.03450 0.94954 0.85453 0.78699 0.78518 0.78395 1.19887 1.21229 1.18497 1.21692 0.93757 0.92049 1.50185 0.91544 1.18943 0.94480 0.92815 0.95243 1.21597 0.98475 0.91670 1.02242 1.21170 0.91146 0.84042 1.01114 1.45021 1.11202 1.03084 1.78427 1.15062 0.83291 0.80027 0.77685 1.90960 1.15025 1.84011 1.59663 1.46956 1.06228 1.05460 1.79886 1.22091 0.80184 0.95671 1.07759 1.20748 0.85085 0.88385 0.74256 1.90832 1.17452 1.81881 1.49898 1.48214 1.07860 1.05874 1.73915 1.22819 1.11816 0.78375 0.89560 1.21648 0.73221 0.75743 0.92150 1.93205 1.48667 1.91067 1.83987 1.93212 1.95821 1.29953 1.96985 1.93216 1.54851 1.85529 1.83968 1.21290 0.83575 0.76111 1.04597 0.92882 0.98736 0.98835 0.91390 0.91190 0.92737 0.92968 0.75116 0.84778 0.85637 0.80961 0.83520 0.89727 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 3 Si 0.96 43.05 29.54 68.60 2.03 45.07 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.54 -29.18 9.11 25.60 0.23 -28.95 16 8 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.14 4.97 29.84 0.15 1.29 16 10 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 11 C 0.15 4.77 5.67 86.38 0.49 5.26 16 12 N -0.72 -17.35 5.53 -478.53 -2.64 -19.99 16 13 C 0.74 18.73 8.53 179.05 1.53 20.26 16 14 O -0.62 -21.09 16.74 -3.98 -0.07 -21.15 16 15 N -0.64 -11.03 3.36 -854.31 -2.87 -13.90 16 16 C 0.07 0.84 6.36 85.56 0.54 1.39 16 17 C 0.53 8.08 7.86 87.75 0.69 8.77 16 18 O -0.53 -11.43 17.67 -3.01 -0.05 -11.48 16 19 N -0.62 -7.05 2.80 -834.37 -2.34 -9.38 16 20 C 0.10 0.62 5.96 86.38 0.51 1.14 16 21 C 0.43 5.32 3.29 71.98 0.24 5.56 16 22 F -0.19 -2.80 16.61 44.97 0.75 -2.06 16 23 F -0.18 -2.21 17.32 44.97 0.78 -1.43 16 24 F -0.19 -3.62 16.98 44.97 0.76 -2.86 16 25 C 0.35 4.59 7.47 170.95 1.28 5.86 16 26 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 27 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 7.23 7.56 -92.71 -0.70 6.53 16 34 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.17 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.15 0.68 7.98 -2.38 -0.02 0.66 16 38 H 0.08 1.21 7.60 -2.39 -0.02 1.19 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -75.82 351.70 3.31 -72.51 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.40 Total: 3.12 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.29 Total: 17.37 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -7.57 Total: -99.09 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.12 Total: -32.63 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 2.29 Total: -6.35 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.82 3.31 -72.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362843531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.410 kcal (2) G-P(sol) polarization free energy of solvation -75.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds