Wall clock time and date at job start Tue Mar 31 2020 13:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 120.11903 * 2 1 4 4 C 1.37936 * 120.35037 * 179.88024 * 3 2 1 5 5 C 1.39280 * 120.23754 * 359.95919 * 4 3 2 6 6 C 1.38884 * 118.88253 * 0.35234 * 5 4 3 7 7 C 1.37740 * 120.78029 * 359.48469 * 6 5 4 8 8 C 1.51639 * 107.04226 * 179.47399 * 6 5 4 9 9 H 1.08998 * 110.94454 * 102.76809 * 8 6 5 10 10 N 1.46504 * 110.93717 * 226.41893 * 8 6 5 11 11 C 1.34778 * 119.99953 * 201.99050 * 10 8 6 12 12 O 1.21583 * 119.99787 * 359.97438 * 11 10 8 13 13 C 1.47646 * 119.99859 * 179.97438 * 11 10 8 14 14 C 1.40007 * 119.89570 * 359.72395 * 13 11 10 15 15 C 1.36319 * 120.10808 * 179.72109 * 14 13 11 16 16 C 1.40899 * 119.88729 * 0.53091 * 15 14 13 17 17 C 1.41101 * 120.10050 * 179.76744 * 16 15 14 18 18 H 1.07996 * 119.99966 * 150.13516 * 17 16 15 19 19 C 1.40229 * 120.00274 * 330.12707 * 17 16 15 20 20 N 1.30644 * 120.00224 * 161.75882 * 19 17 16 21 21 Si 1.86803 * 119.99718 * 341.75795 * 19 17 16 22 22 H 1.48506 * 109.47265 * 95.41199 * 21 19 17 23 23 H 1.48509 * 109.46952 * 215.41220 * 21 19 17 24 24 H 1.48495 * 109.47393 * 335.40970 * 21 19 17 25 25 C 1.40887 * 119.79126 * 359.74544 * 16 15 14 26 26 C 1.36313 * 119.89233 * 359.97438 * 25 16 15 27 27 C 1.54710 * 101.92478 * 344.60898 * 8 6 5 28 28 O 1.36132 * 129.88238 * 181.00549 * 5 4 3 29 29 H 1.08991 * 109.47375 * 89.99730 * 1 2 3 30 30 H 1.08997 * 109.47229 * 210.00440 * 1 2 3 31 31 H 1.09007 * 109.46931 * 329.99755 * 1 2 3 32 32 H 1.08000 * 119.82529 * 359.86314 * 3 2 1 33 33 H 1.07996 * 119.88061 * 179.97438 * 4 3 2 34 34 H 1.08000 * 120.01315 * 180.33077 * 7 6 5 35 35 H 0.96998 * 120.00078 * 21.98635 * 10 8 6 36 36 H 1.08005 * 119.94726 * 0.02562 * 14 13 11 37 37 H 1.07999 * 120.05676 * 180.25127 * 15 14 13 38 38 H 0.96997 * 120.00219 * 180.02562 * 20 19 17 39 39 H 1.07998 * 120.05017 * 179.97438 * 25 16 15 40 40 H 1.08002 * 119.94630 * 180.02562 * 26 25 16 41 41 H 1.09001 * 110.74978 * 143.61409 * 27 8 6 42 42 H 1.08998 * 110.75020 * 266.96201 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5803 1.2017 0.0025 5 6 4.2865 0.0012 0.0059 6 6 3.5785 -1.1936 -0.0008 7 6 2.2011 -1.1968 0.0001 8 6 4.5993 -2.3150 -0.0083 9 1 4.6960 -2.7605 0.9817 10 7 4.2534 -3.3311 -1.0054 11 6 4.7382 -4.5831 -0.8878 12 8 5.4630 -4.8692 0.0455 13 6 4.3891 -5.6073 -1.8924 14 6 3.5496 -5.2770 -2.9631 15 6 3.2290 -6.2177 -3.8961 16 6 3.7351 -7.5271 -3.7756 17 6 3.4022 -8.5057 -4.7361 18 1 4.0949 -9.3046 -4.9555 19 6 2.1718 -8.4409 -5.4058 20 7 1.9986 -9.1016 -6.5194 21 14 0.7805 -7.4097 -4.7054 22 1 0.7869 -6.0696 -5.3453 23 1 -0.5168 -8.0806 -4.9746 24 1 0.9651 -7.2593 -3.2397 25 6 4.5748 -7.8562 -2.6932 26 6 4.8943 -6.9072 -1.7683 27 6 5.8934 -1.5665 -0.4066 28 8 5.6293 -0.2215 0.0270 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6600 2.1309 -0.0022 33 1 4.1145 2.1402 0.0021 34 1 1.6631 -2.1333 0.0002 35 1 3.6754 -3.1028 -1.7502 36 1 3.1593 -4.2739 -3.0526 37 1 2.5847 -5.9609 -4.7239 38 1 1.1477 -9.0565 -6.9828 39 1 4.9646 -8.8587 -2.5965 40 1 5.5383 -7.1584 -0.9385 41 1 6.7552 -1.9793 0.1179 42 1 6.0435 -1.6020 -1.4856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367000600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:20 Heat of formation + Delta-G solvation = -28.734158 kcal Electronic energy + Delta-G solvation = -25873.757476 eV Core-core repulsion = 22169.300045 eV Total energy + Delta-G solvation = -3704.457432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43062 -39.20728 -37.96878 -37.38916 -34.67552 -33.91715 -32.14556 -31.62861 -30.62235 -29.98946 -28.72495 -26.84177 -25.88607 -23.59233 -22.50773 -21.55504 -21.44449 -21.02131 -19.86909 -17.84910 -17.68285 -17.22462 -16.75144 -16.34116 -15.57396 -15.45359 -14.73847 -14.47230 -14.18450 -14.08876 -13.90285 -13.83560 -13.74807 -13.61639 -13.05256 -12.93165 -12.69795 -12.53846 -12.34250 -12.32598 -12.15623 -11.91341 -11.78005 -11.05856 -10.99064 -10.97922 -10.83359 -10.46293 -10.34710 -9.80628 -9.46231 -9.34372 -9.14266 -8.89663 -8.19522 -8.02293 -7.81310 -7.28183 -4.79167 1.02492 1.15086 1.91357 2.61408 2.89259 3.03145 3.06124 3.12251 3.31659 3.54541 3.70842 3.75444 4.16843 4.33835 4.51089 4.66654 4.73166 4.94512 5.07823 5.10390 5.21906 5.24229 5.40273 5.44386 5.47888 5.49872 5.70274 5.72006 5.82848 5.87811 5.96197 6.04841 6.18306 6.33540 6.37535 6.40894 6.55102 6.63833 6.67227 6.89972 6.99148 7.16840 7.30579 7.44941 7.61903 7.87141 7.94401 8.04765 8.38473 8.48138 8.77619 9.71452 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.003276 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.239924 B = 8545.927700 C = 9953.211656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.118 4.118 3 C -0.081 4.081 4 C -0.138 4.138 5 C 0.110 3.890 6 C -0.182 4.182 7 C -0.057 4.057 8 C 0.166 3.834 9 H 0.113 0.887 10 N -0.730 5.730 11 C 0.574 3.426 12 O -0.568 6.568 13 C -0.287 4.287 14 C -0.035 4.035 15 C -0.248 4.248 16 C 0.107 3.893 17 C -0.422 4.422 18 H 0.097 0.903 19 C 0.081 3.919 20 N -0.784 5.784 21 Si 0.916 3.084 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.241 1.241 25 C -0.222 4.222 26 C -0.015 4.015 27 C 0.040 3.960 28 O -0.303 6.303 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.401 0.599 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.292 0.708 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 16.992 8.219 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.157 4.157 5 C 0.064 3.936 6 C -0.183 4.183 7 C -0.075 4.075 8 C 0.060 3.940 9 H 0.131 0.869 10 N -0.384 5.384 11 C 0.369 3.631 12 O -0.449 6.449 13 C -0.291 4.291 14 C -0.054 4.054 15 C -0.267 4.267 16 C 0.103 3.897 17 C -0.449 4.449 18 H 0.115 0.885 19 C -0.141 4.141 20 N -0.406 5.406 21 Si 0.742 3.258 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.164 1.164 25 C -0.241 4.241 26 C -0.035 4.035 27 C -0.036 4.036 28 O -0.216 6.216 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.237 0.763 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.671 16.775 8.692 19.081 hybrid contribution -0.915 0.311 -0.425 1.056 sum -3.586 17.086 8.267 19.317 Atomic orbital electron populations 1.20714 0.90664 1.02769 1.02405 1.19797 0.96289 0.92573 1.03213 1.20765 0.92711 0.97894 0.98566 1.20224 0.93467 0.95521 1.06483 1.19530 0.83467 0.94269 0.96306 1.20837 0.94768 0.94383 1.08340 1.20250 0.91690 0.98241 0.97348 1.20847 0.90755 0.87138 0.95232 0.86940 1.45884 1.53835 1.10016 1.28624 1.18596 0.78334 0.81132 0.85008 1.90659 1.38844 1.80785 1.34582 1.18829 1.14071 0.94925 1.01291 1.20410 0.94774 0.97070 0.93158 1.20705 1.09698 0.94232 1.02020 1.17861 0.89831 0.91671 0.90306 1.19787 1.01906 1.09464 1.13706 0.88496 1.26388 1.00926 0.94176 0.92648 1.69603 1.26524 1.33012 1.11420 0.86219 0.77909 0.79013 0.82682 1.19238 1.21410 1.16350 1.20740 1.07877 0.98564 0.96900 1.20441 0.94833 0.91420 0.96767 1.24403 0.99222 0.78624 1.01332 1.86854 1.19701 1.32931 1.82122 0.91185 0.91489 0.91581 0.85175 0.85350 0.85515 0.76305 0.88866 0.87850 0.89742 0.87577 0.87496 0.86805 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.02 36.01 0.36 -0.45 16 2 C -0.12 -1.16 5.89 -104.56 -0.62 -1.78 16 3 C -0.08 -0.75 9.68 -39.68 -0.38 -1.13 16 4 C -0.14 -1.45 10.06 -39.30 -0.40 -1.85 16 5 C 0.11 1.39 7.04 -38.95 -0.27 1.12 16 6 C -0.18 -2.31 5.81 -104.10 -0.60 -2.91 16 7 C -0.06 -0.65 9.70 -39.72 -0.39 -1.04 16 8 C 0.17 2.30 3.45 -67.72 -0.23 2.07 16 9 H 0.11 1.69 7.63 -51.93 -0.40 1.29 16 10 N -0.73 -11.11 5.12 -54.60 -0.28 -11.39 16 11 C 0.57 10.95 7.76 -12.42 -0.10 10.86 16 12 O -0.57 -12.17 16.01 5.29 0.08 -12.08 16 13 C -0.29 -5.91 5.89 -104.73 -0.62 -6.53 16 14 C -0.04 -0.70 9.47 -39.61 -0.38 -1.07 16 15 C -0.25 -5.48 7.11 -39.27 -0.28 -5.76 16 16 C 0.11 2.54 5.11 -106.80 -0.55 1.99 16 17 C -0.42 -10.53 9.56 -37.75 -0.36 -10.90 16 18 H 0.10 2.52 8.06 -52.49 -0.42 2.10 16 19 C 0.08 1.96 5.40 -17.31 -0.09 1.86 16 20 N -0.78 -19.14 13.92 55.56 0.77 -18.36 16 21 Si 0.92 19.03 24.52 -169.99 -4.17 14.86 16 22 H -0.27 -5.31 6.71 56.52 0.38 -4.93 16 23 H -0.29 -5.75 7.11 56.52 0.40 -5.34 16 24 H -0.24 -5.17 6.87 56.52 0.39 -4.78 16 25 C -0.22 -4.95 9.73 -39.27 -0.38 -5.34 16 26 C -0.02 -0.33 9.52 -39.61 -0.38 -0.71 16 27 C 0.04 0.52 7.73 38.06 0.29 0.81 16 28 O -0.30 -4.04 11.10 -20.16 -0.22 -4.26 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.40 5.54 6.63 -40.82 -0.27 5.27 16 36 H 0.09 1.53 6.37 -52.48 -0.33 1.20 16 37 H 0.10 2.25 4.72 -52.49 -0.25 2.00 16 38 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 39 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.11 2.20 7.63 -52.49 -0.40 1.80 16 41 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -27.60 352.40 -8.91 -36.51 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.04 Total: 10.17 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -5.36 Total: -20.76 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.49 Total: -29.75 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.14 Total: -16.35 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.17 Total: 14.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.60 -8.91 -36.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367000600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.776 kcal (2) G-P(sol) polarization free energy of solvation -27.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds