Wall clock time and date at job start Tue Mar 31 2020 13:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 120.11903 * 2 1 4 4 C 1.37936 * 120.35037 * 179.88024 * 3 2 1 5 5 C 1.39280 * 120.23754 * 359.95919 * 4 3 2 6 6 C 1.38884 * 118.88253 * 0.35234 * 5 4 3 7 7 C 1.37740 * 120.78029 * 359.48469 * 6 5 4 8 8 C 1.51639 * 107.04226 * 179.47399 * 6 5 4 9 9 H 1.08998 * 110.94454 * 102.76809 * 8 6 5 10 10 N 1.46504 * 110.93717 * 226.41893 * 8 6 5 11 11 C 1.34778 * 119.99953 * 201.99050 * 10 8 6 12 12 O 1.21583 * 119.99787 * 359.97438 * 11 10 8 13 13 C 1.47646 * 119.99859 * 179.97438 * 11 10 8 14 14 C 1.40007 * 119.89570 * 359.72395 * 13 11 10 15 15 C 1.36319 * 120.10808 * 179.72109 * 14 13 11 16 16 C 1.40899 * 119.88729 * 0.53091 * 15 14 13 17 17 C 1.41101 * 120.10050 * 179.76744 * 16 15 14 18 18 H 1.07996 * 119.99966 * 150.13516 * 17 16 15 19 19 C 1.40229 * 120.00274 * 330.12707 * 17 16 15 20 20 N 1.30644 * 120.00224 * 161.75882 * 19 17 16 21 21 Si 1.86803 * 119.99718 * 341.75795 * 19 17 16 22 22 H 1.48506 * 109.47265 * 95.41199 * 21 19 17 23 23 H 1.48509 * 109.46952 * 215.41220 * 21 19 17 24 24 H 1.48495 * 109.47393 * 335.40970 * 21 19 17 25 25 C 1.40887 * 119.79126 * 359.74544 * 16 15 14 26 26 C 1.36313 * 119.89233 * 359.97438 * 25 16 15 27 27 C 1.54710 * 101.92478 * 344.60898 * 8 6 5 28 28 O 1.36132 * 129.88238 * 181.00549 * 5 4 3 29 29 H 1.08991 * 109.47375 * 89.99730 * 1 2 3 30 30 H 1.08997 * 109.47229 * 210.00440 * 1 2 3 31 31 H 1.09007 * 109.46931 * 329.99755 * 1 2 3 32 32 H 1.08000 * 119.82529 * 359.86314 * 3 2 1 33 33 H 1.07996 * 119.88061 * 179.97438 * 4 3 2 34 34 H 1.08000 * 120.01315 * 180.33077 * 7 6 5 35 35 H 0.96998 * 120.00078 * 21.98635 * 10 8 6 36 36 H 1.08005 * 119.94726 * 0.02562 * 14 13 11 37 37 H 1.07999 * 120.05676 * 180.25127 * 15 14 13 38 38 H 0.96997 * 120.00219 * 180.02562 * 20 19 17 39 39 H 1.07998 * 120.05017 * 179.97438 * 25 16 15 40 40 H 1.08002 * 119.94630 * 180.02562 * 26 25 16 41 41 H 1.09001 * 110.74978 * 143.61409 * 27 8 6 42 42 H 1.08998 * 110.75020 * 266.96201 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5803 1.2017 0.0025 5 6 4.2865 0.0012 0.0059 6 6 3.5785 -1.1936 -0.0008 7 6 2.2011 -1.1968 0.0001 8 6 4.5993 -2.3150 -0.0083 9 1 4.6960 -2.7605 0.9817 10 7 4.2534 -3.3311 -1.0054 11 6 4.7382 -4.5831 -0.8878 12 8 5.4630 -4.8692 0.0455 13 6 4.3891 -5.6073 -1.8924 14 6 3.5496 -5.2770 -2.9631 15 6 3.2290 -6.2177 -3.8961 16 6 3.7351 -7.5271 -3.7756 17 6 3.4022 -8.5057 -4.7361 18 1 4.0949 -9.3046 -4.9555 19 6 2.1718 -8.4409 -5.4058 20 7 1.9986 -9.1016 -6.5194 21 14 0.7805 -7.4097 -4.7054 22 1 0.7869 -6.0696 -5.3453 23 1 -0.5168 -8.0806 -4.9746 24 1 0.9651 -7.2593 -3.2397 25 6 4.5748 -7.8562 -2.6932 26 6 4.8943 -6.9072 -1.7683 27 6 5.8934 -1.5665 -0.4066 28 8 5.6293 -0.2215 0.0270 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6600 2.1309 -0.0022 33 1 4.1145 2.1402 0.0021 34 1 1.6631 -2.1333 0.0002 35 1 3.6754 -3.1028 -1.7502 36 1 3.1593 -4.2739 -3.0526 37 1 2.5847 -5.9609 -4.7239 38 1 1.1477 -9.0565 -6.9828 39 1 4.9646 -8.8587 -2.5965 40 1 5.5383 -7.1584 -0.9385 41 1 6.7552 -1.9793 0.1179 42 1 6.0435 -1.6020 -1.4856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367000600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:19 Heat of formation + Delta-G solvation = -43.831784 kcal Electronic energy + Delta-G solvation = -25874.412158 eV Core-core repulsion = 22169.300045 eV Total energy + Delta-G solvation = -3705.112114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.39973 -40.73858 -39.11416 -38.74760 -35.98453 -35.68553 -33.01402 -32.86369 -32.09223 -31.58146 -29.82586 -27.72098 -27.41532 -24.64368 -23.81638 -23.14435 -22.66646 -22.01862 -21.37362 -19.48729 -19.08216 -18.30413 -17.91589 -17.48668 -17.11757 -16.43287 -16.07884 -15.80453 -15.72011 -15.43541 -15.11798 -14.99613 -14.63766 -14.60207 -14.50518 -14.37475 -14.01203 -14.00114 -13.63036 -13.48528 -13.11686 -12.92233 -12.78098 -12.65601 -12.56531 -12.22674 -12.00797 -11.82295 -11.73436 -11.55789 -11.11230 -10.89456 -10.36783 -9.92664 -9.73303 -9.57306 -9.05465 -9.05108 -6.64991 0.19152 0.22372 0.33183 0.87775 1.24323 1.37769 1.48860 1.91061 2.01542 2.08964 2.30675 2.64668 2.73510 3.20900 3.41196 3.50444 3.82553 3.94415 4.03454 4.09126 4.14515 4.24984 4.31780 4.38907 4.41191 4.55027 4.61611 4.65661 4.74732 4.82977 4.89631 4.95419 5.05860 5.13762 5.15105 5.25710 5.31792 5.38212 5.46476 5.56459 5.60279 5.64874 5.74378 5.80413 6.09650 6.12661 6.23911 6.52688 6.59584 6.66793 7.27065 8.00523 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.003276 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.239924 B = 8545.927700 C = 9953.211656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.116 4.116 3 C -0.075 4.075 4 C -0.139 4.139 5 C 0.086 3.914 6 C -0.194 4.194 7 C -0.070 4.070 8 C 0.166 3.834 9 H 0.098 0.902 10 N -0.711 5.711 11 C 0.578 3.422 12 O -0.592 6.592 13 C -0.282 4.282 14 C -0.027 4.027 15 C -0.257 4.257 16 C 0.096 3.904 17 C -0.462 4.462 18 H 0.065 0.935 19 C 0.050 3.950 20 N -0.822 5.822 21 Si 0.966 3.034 22 H -0.246 1.246 23 H -0.275 1.275 24 H -0.252 1.252 25 C -0.233 4.233 26 C -0.022 4.022 27 C 0.044 3.956 28 O -0.313 6.313 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.411 0.589 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.302 0.698 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 20.682 9.108 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.158 4.158 5 C 0.040 3.960 6 C -0.195 4.195 7 C -0.088 4.088 8 C 0.060 3.940 9 H 0.116 0.884 10 N -0.364 5.364 11 C 0.372 3.628 12 O -0.475 6.475 13 C -0.286 4.286 14 C -0.046 4.046 15 C -0.276 4.276 16 C 0.092 3.908 17 C -0.489 4.489 18 H 0.083 0.917 19 C -0.169 4.169 20 N -0.446 5.446 21 Si 0.788 3.212 22 H -0.171 1.171 23 H -0.201 1.201 24 H -0.176 1.176 25 C -0.252 4.252 26 C -0.041 4.041 27 C -0.033 4.033 28 O -0.227 6.227 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.248 0.752 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.514 20.493 9.566 23.062 hybrid contribution -0.266 -0.674 -0.526 0.895 sum -4.781 19.820 9.040 22.302 Atomic orbital electron populations 1.20778 0.88803 1.03753 1.03182 1.20147 0.97662 0.92169 1.01694 1.21175 0.92271 0.99069 0.96769 1.20579 0.94185 0.95511 1.05515 1.19824 0.83087 0.95140 0.97903 1.20751 0.95134 0.93667 1.09993 1.20417 0.91257 0.99211 0.97912 1.20861 0.92172 0.87015 0.93926 0.88449 1.45673 1.52753 1.09012 1.28939 1.18355 0.78235 0.81990 0.84241 1.90658 1.39969 1.81463 1.35394 1.19167 1.12915 0.94983 1.01530 1.20740 0.93575 0.98527 0.91726 1.20854 1.10028 0.93835 1.02904 1.18016 0.90230 0.92303 0.90203 1.19733 1.02880 1.10062 1.16223 0.91663 1.27029 1.02208 0.95061 0.92581 1.69614 1.27716 1.34747 1.12499 0.85474 0.75767 0.78749 0.81208 1.17099 1.20098 1.17557 1.20874 1.08089 0.99179 0.97078 1.20602 0.94973 0.91907 0.96651 1.24342 0.98695 0.78616 1.01600 1.86832 1.20494 1.32787 1.82537 0.90387 0.91460 0.89759 0.81922 0.83606 0.85377 0.75174 0.84735 0.87168 0.88729 0.87380 0.86879 0.86518 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.02 71.24 0.71 -0.48 16 2 C -0.12 -1.89 5.89 -19.83 -0.12 -2.00 16 3 C -0.08 -1.08 9.68 22.21 0.21 -0.87 16 4 C -0.14 -2.51 10.06 22.45 0.23 -2.28 16 5 C 0.09 2.00 7.04 22.68 0.16 2.16 16 6 C -0.19 -4.57 5.81 -19.53 -0.11 -4.68 16 7 C -0.07 -1.42 9.70 22.18 0.22 -1.21 16 8 C 0.17 4.37 3.45 45.13 0.16 4.52 16 9 H 0.10 2.87 7.63 -2.39 -0.02 2.86 16 10 N -0.71 -20.11 5.12 -444.93 -2.28 -22.38 16 11 C 0.58 21.07 7.76 86.73 0.67 21.74 16 12 O -0.59 -24.79 16.01 -3.98 -0.06 -24.86 16 13 C -0.28 -11.14 5.89 -19.93 -0.12 -11.26 16 14 C -0.03 -1.00 9.47 22.25 0.21 -0.79 16 15 C -0.26 -11.05 7.11 22.47 0.16 -10.89 16 16 C 0.10 4.60 5.11 -21.28 -0.11 4.49 16 17 C -0.46 -24.06 9.56 23.46 0.22 -23.84 16 18 H 0.07 3.66 8.06 -2.91 -0.02 3.64 16 19 C 0.05 2.46 5.40 85.35 0.46 2.92 16 20 N -0.82 -41.24 13.92 21.87 0.30 -40.94 16 21 Si 0.97 38.37 24.52 68.60 1.68 40.05 16 22 H -0.25 -8.92 6.71 99.48 0.67 -8.25 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 24 H -0.25 -10.38 6.87 99.48 0.68 -9.69 16 25 C -0.23 -10.60 9.73 22.47 0.22 -10.38 16 26 C -0.02 -0.94 9.52 22.25 0.21 -0.73 16 27 C 0.04 1.07 7.73 72.56 0.56 1.63 16 28 O -0.31 -7.94 11.10 -95.05 -1.06 -9.00 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.08 0.64 8.09 -2.38 -0.02 0.62 16 32 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.41 10.06 6.63 -92.71 -0.61 9.45 16 36 H 0.14 3.85 6.37 -2.91 -0.02 3.83 16 37 H 0.11 4.56 4.72 -2.91 -0.01 4.55 16 38 H 0.30 13.38 8.29 -92.71 -0.77 12.61 16 39 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.11 4.64 7.63 -2.91 -0.02 4.61 16 41 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 Total: -1.00 -60.69 352.40 2.93 -57.77 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.39 Total: 31.32 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 3.95 Total: -31.95 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -1.97 Total: -63.32 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.12 Total: -33.86 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.68 Total: 40.05 kcal Total: -60.69 2.93 -57.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367000600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.934 kcal (2) G-P(sol) polarization free energy of solvation -60.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds