Wall clock time and date at job start Tue Mar 31 2020 13:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 120.11839 * 2 1 4 4 C 1.37933 * 120.35313 * 179.84934 * 3 2 1 5 5 C 1.39284 * 120.24067 * 359.97438 * 4 3 2 6 6 C 1.38876 * 118.87213 * 0.27269 * 5 4 3 7 7 C 1.37741 * 120.79060 * 359.53628 * 6 5 4 8 8 C 1.51646 * 107.03657 * 179.53472 * 6 5 4 9 9 H 1.08996 * 110.94983 * 226.17367 * 8 6 5 10 10 N 1.46503 * 110.94421 * 102.47126 * 8 6 5 11 11 C 1.34777 * 119.99794 * 155.00400 * 10 8 6 12 12 O 1.21583 * 120.00135 * 359.97438 * 11 10 8 13 13 C 1.47645 * 119.99839 * 180.02562 * 11 10 8 14 14 C 1.40019 * 119.89396 * 359.72593 * 13 11 10 15 15 C 1.36318 * 120.10566 * 179.72227 * 14 13 11 16 16 C 1.40884 * 119.88861 * 0.56900 * 15 14 13 17 17 C 1.41115 * 120.10352 * 179.67974 * 16 15 14 18 18 H 1.07995 * 120.00343 * 204.65608 * 17 16 15 19 19 C 1.40226 * 119.99759 * 24.64834 * 17 16 15 20 20 N 1.30646 * 120.00147 * 17.87813 * 19 17 16 21 21 Si 1.86800 * 120.00234 * 197.87724 * 19 17 16 22 22 H 1.48504 * 109.46599 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47173 * 119.99867 * 21 19 17 24 24 H 1.48502 * 109.47247 * 240.00545 * 21 19 17 25 25 C 1.40889 * 119.79814 * 359.70450 * 16 15 14 26 26 C 1.36322 * 119.88867 * 359.97438 * 25 16 15 27 27 C 1.54714 * 101.90485 * 344.32453 * 8 6 5 28 28 O 1.36137 * 129.87763 * 180.48552 * 5 4 3 29 29 H 1.08999 * 109.46534 * 89.99989 * 1 2 3 30 30 H 1.08993 * 109.47499 * 210.00334 * 1 2 3 31 31 H 1.08998 * 109.46997 * 330.00623 * 1 2 3 32 32 H 1.08007 * 119.82400 * 359.81943 * 3 2 1 33 33 H 1.07999 * 119.87894 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.00875 * 180.28082 * 7 6 5 35 35 H 0.96996 * 119.99914 * 335.00756 * 10 8 6 36 36 H 1.07996 * 119.94392 * 0.02562 * 14 13 11 37 37 H 1.07997 * 120.05100 * 180.25658 * 15 14 13 38 38 H 0.97001 * 120.00194 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.05475 * 179.97438 * 25 16 15 40 40 H 1.07994 * 119.94555 * 180.02562 * 26 25 16 41 41 H 1.08994 * 110.75155 * 143.67968 * 27 8 6 42 42 H 1.09003 * 110.74711 * 267.03385 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1962 0.0000 4 6 3.5802 1.2018 0.0031 5 6 4.2866 0.0014 0.0069 6 6 3.5786 -1.1933 0.0016 7 6 2.2012 -1.1967 0.0024 8 6 4.5994 -2.3147 -0.0044 9 1 4.3401 -3.0739 -0.7423 10 7 4.7343 -2.9073 1.3286 11 6 5.1654 -4.1773 1.4610 12 8 5.4419 -4.8315 0.4742 13 6 5.3007 -4.7747 2.8044 14 6 4.9861 -4.0179 3.9396 15 6 5.1041 -4.5669 5.1818 16 6 5.5549 -5.8942 5.3227 17 6 5.6852 -6.4649 6.6067 18 1 6.3723 -7.2825 6.7671 19 6 4.9225 -5.9702 7.6744 20 7 3.8622 -5.2443 7.4387 21 14 5.4227 -6.3491 9.4339 22 1 6.6513 -7.1833 9.4305 23 1 5.6888 -5.0797 10.1571 24 1 4.3260 -7.0851 10.1127 25 6 5.8757 -6.6500 4.1778 26 6 5.7483 -6.0944 2.9394 27 6 5.8919 -1.5676 -0.4107 28 8 5.6296 -0.2210 0.0192 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6599 2.1310 -0.0030 33 1 4.1144 2.1404 0.0027 34 1 1.6633 -2.1333 0.0028 35 1 4.5132 -2.3855 2.1159 36 1 4.6447 -2.9991 3.8307 37 1 4.8572 -3.9837 6.0565 38 1 3.3344 -4.9024 8.1773 39 1 6.2221 -7.6677 4.2810 40 1 5.9936 -6.6730 2.0612 41 1 6.7558 -1.9783 0.1118 42 1 6.0374 -1.6068 -1.4902 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367000601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:23 Heat of formation + Delta-G solvation = -30.509242 kcal Electronic energy + Delta-G solvation = -25765.247393 eV Core-core repulsion = 22060.712988 eV Total energy + Delta-G solvation = -3704.534405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36511 -38.98247 -37.87994 -37.10866 -34.41761 -33.91089 -32.07562 -31.51353 -30.15292 -29.48052 -28.62539 -26.77216 -25.87188 -23.53714 -22.40387 -21.54574 -21.15585 -20.77025 -19.70721 -17.67941 -17.52369 -17.01206 -16.57076 -16.26895 -15.53597 -15.12164 -15.00532 -14.21126 -14.14888 -14.03879 -13.79668 -13.77797 -13.65929 -13.26547 -12.90961 -12.73754 -12.33272 -12.27433 -12.15113 -11.97367 -11.84893 -11.76179 -11.41653 -11.30617 -11.04626 -10.96964 -10.81612 -10.68085 -10.08312 -9.60227 -9.39168 -9.30941 -8.96682 -8.74860 -8.14180 -7.75820 -7.58702 -7.07198 -4.63934 1.08159 1.23150 2.16875 2.87683 2.93366 2.98843 3.00743 3.18349 3.38488 3.71065 3.76814 3.87919 4.27639 4.45245 4.62993 4.72193 4.79138 5.04522 5.14276 5.19719 5.23536 5.44351 5.49870 5.53496 5.55103 5.62135 5.77513 5.90680 6.01483 6.04970 6.12171 6.27873 6.28353 6.41458 6.49986 6.73382 6.78644 6.79475 7.00056 7.07489 7.09857 7.40027 7.60815 7.74848 7.82834 8.03299 8.14248 8.36603 8.59554 8.71594 8.95868 9.84660 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.002877 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.660028 B = 9730.803348 C =10662.613155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.122 4.122 3 C -0.078 4.078 4 C -0.141 4.141 5 C 0.113 3.887 6 C -0.185 4.185 7 C -0.050 4.050 8 C 0.163 3.837 9 H 0.113 0.887 10 N -0.728 5.728 11 C 0.574 3.426 12 O -0.574 6.574 13 C -0.287 4.287 14 C -0.061 4.061 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.440 4.440 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.770 5.770 21 Si 0.913 3.087 22 H -0.257 1.257 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.239 4.239 26 C -0.020 4.020 27 C 0.039 3.961 28 O -0.302 6.302 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.401 0.599 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 11.613 -9.370 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.096 4.096 4 C -0.160 4.160 5 C 0.067 3.933 6 C -0.187 4.187 7 C -0.069 4.069 8 C 0.057 3.943 9 H 0.131 0.869 10 N -0.381 5.381 11 C 0.370 3.630 12 O -0.456 6.456 13 C -0.291 4.291 14 C -0.080 4.080 15 C -0.197 4.197 16 C 0.126 3.874 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.148 4.148 20 N -0.393 5.393 21 Si 0.737 3.263 22 H -0.180 1.180 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.259 4.259 26 C -0.039 4.039 27 C -0.037 4.037 28 O -0.216 6.216 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.237 0.763 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.396 11.389 -9.884 15.707 hybrid contribution -0.047 0.019 1.190 1.191 sum -4.443 11.408 -8.695 15.016 Atomic orbital electron populations 1.20700 0.90717 1.02889 1.02152 1.19780 0.96257 0.92589 1.03639 1.20764 0.92716 0.97863 0.98304 1.20216 0.93457 0.95529 1.06793 1.19624 0.83535 0.94379 0.95716 1.20827 0.94707 0.94315 1.08810 1.20258 0.91727 0.98159 0.96729 1.20770 0.91264 0.94008 0.88229 0.86945 1.45959 1.70387 1.14740 1.07008 1.18673 0.74645 0.79703 0.89999 1.90633 1.52758 1.61718 1.40539 1.18829 1.22575 0.97479 0.90222 1.20478 0.97755 0.96766 0.93049 1.20972 1.07097 0.95769 0.95852 1.17799 0.86310 0.90876 0.92436 1.19901 1.19222 1.15053 0.92605 0.89607 1.26118 0.93267 0.92994 1.02395 1.69749 1.10177 1.24153 1.35189 0.86164 0.80104 0.79542 0.80514 1.18027 1.19344 1.19628 1.20718 1.13692 0.99322 0.92166 1.20349 0.94050 0.92970 0.96542 1.24371 0.99594 0.79051 1.00667 1.86847 1.19588 1.32818 1.82322 0.91404 0.91450 0.91565 0.85216 0.85409 0.85615 0.76314 0.89403 0.86191 0.90219 0.88328 0.88076 0.86959 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.02 36.00 0.36 -0.49 16 2 C -0.12 -1.28 5.89 -104.57 -0.62 -1.89 16 3 C -0.08 -0.77 9.68 -39.68 -0.38 -1.15 16 4 C -0.14 -1.59 10.06 -39.30 -0.40 -1.98 16 5 C 0.11 1.52 7.04 -38.96 -0.27 1.25 16 6 C -0.19 -2.50 5.82 -104.10 -0.61 -3.10 16 7 C -0.05 -0.61 9.70 -39.72 -0.39 -0.99 16 8 C 0.16 2.40 3.50 -67.71 -0.24 2.17 16 9 H 0.11 1.72 7.54 -51.93 -0.39 1.32 16 10 N -0.73 -12.44 5.10 -54.60 -0.28 -12.72 16 11 C 0.57 11.95 7.76 -12.42 -0.10 11.86 16 12 O -0.57 -13.12 15.96 5.29 0.08 -13.04 16 13 C -0.29 -6.49 5.89 -104.73 -0.62 -7.11 16 14 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 15 C -0.18 -4.35 8.64 -39.27 -0.34 -4.68 16 16 C 0.13 3.27 5.58 -106.80 -0.60 2.67 16 17 C -0.44 -10.87 9.04 -37.74 -0.34 -11.21 16 18 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 20 N -0.77 -18.32 10.95 55.56 0.61 -17.71 16 21 Si 0.91 17.13 29.60 -169.99 -5.03 12.10 16 22 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 24 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 26 C -0.02 -0.46 9.52 -39.61 -0.38 -0.84 16 27 C 0.04 0.53 7.73 38.06 0.29 0.82 16 28 O -0.30 -4.31 11.10 -20.18 -0.22 -4.53 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.40 6.59 6.65 -40.82 -0.27 6.32 16 36 H 0.09 1.70 6.37 -52.49 -0.33 1.37 16 37 H 0.12 2.98 6.16 -52.49 -0.32 2.66 16 38 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 41 H 0.11 1.56 8.10 -51.93 -0.42 1.14 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -28.21 357.58 -9.97 -38.18 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.07 Total: 13.27 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -5.46 Total: -20.94 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.33 Total: -30.43 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.14 Total: -17.57 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.21 -9.97 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367000601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.673 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds