Wall clock time and date at job start Tue Mar 31 2020 13:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 120.11839 * 2 1 4 4 C 1.37933 * 120.35313 * 179.84934 * 3 2 1 5 5 C 1.39284 * 120.24067 * 359.97438 * 4 3 2 6 6 C 1.38876 * 118.87213 * 0.27269 * 5 4 3 7 7 C 1.37741 * 120.79060 * 359.53628 * 6 5 4 8 8 C 1.51646 * 107.03657 * 179.53472 * 6 5 4 9 9 H 1.08996 * 110.94983 * 226.17367 * 8 6 5 10 10 N 1.46503 * 110.94421 * 102.47126 * 8 6 5 11 11 C 1.34777 * 119.99794 * 155.00400 * 10 8 6 12 12 O 1.21583 * 120.00135 * 359.97438 * 11 10 8 13 13 C 1.47645 * 119.99839 * 180.02562 * 11 10 8 14 14 C 1.40019 * 119.89396 * 359.72593 * 13 11 10 15 15 C 1.36318 * 120.10566 * 179.72227 * 14 13 11 16 16 C 1.40884 * 119.88861 * 0.56900 * 15 14 13 17 17 C 1.41115 * 120.10352 * 179.67974 * 16 15 14 18 18 H 1.07995 * 120.00343 * 204.65608 * 17 16 15 19 19 C 1.40226 * 119.99759 * 24.64834 * 17 16 15 20 20 N 1.30646 * 120.00147 * 17.87813 * 19 17 16 21 21 Si 1.86800 * 120.00234 * 197.87724 * 19 17 16 22 22 H 1.48504 * 109.46599 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47173 * 119.99867 * 21 19 17 24 24 H 1.48502 * 109.47247 * 240.00545 * 21 19 17 25 25 C 1.40889 * 119.79814 * 359.70450 * 16 15 14 26 26 C 1.36322 * 119.88867 * 359.97438 * 25 16 15 27 27 C 1.54714 * 101.90485 * 344.32453 * 8 6 5 28 28 O 1.36137 * 129.87763 * 180.48552 * 5 4 3 29 29 H 1.08999 * 109.46534 * 89.99989 * 1 2 3 30 30 H 1.08993 * 109.47499 * 210.00334 * 1 2 3 31 31 H 1.08998 * 109.46997 * 330.00623 * 1 2 3 32 32 H 1.08007 * 119.82400 * 359.81943 * 3 2 1 33 33 H 1.07999 * 119.87894 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.00875 * 180.28082 * 7 6 5 35 35 H 0.96996 * 119.99914 * 335.00756 * 10 8 6 36 36 H 1.07996 * 119.94392 * 0.02562 * 14 13 11 37 37 H 1.07997 * 120.05100 * 180.25658 * 15 14 13 38 38 H 0.97001 * 120.00194 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.05475 * 179.97438 * 25 16 15 40 40 H 1.07994 * 119.94555 * 180.02562 * 26 25 16 41 41 H 1.08994 * 110.75155 * 143.67968 * 27 8 6 42 42 H 1.09003 * 110.74711 * 267.03385 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1962 0.0000 4 6 3.5802 1.2018 0.0031 5 6 4.2866 0.0014 0.0069 6 6 3.5786 -1.1933 0.0016 7 6 2.2012 -1.1967 0.0024 8 6 4.5994 -2.3147 -0.0044 9 1 4.3401 -3.0739 -0.7423 10 7 4.7343 -2.9073 1.3286 11 6 5.1654 -4.1773 1.4610 12 8 5.4419 -4.8315 0.4742 13 6 5.3007 -4.7747 2.8044 14 6 4.9861 -4.0179 3.9396 15 6 5.1041 -4.5669 5.1818 16 6 5.5549 -5.8942 5.3227 17 6 5.6852 -6.4649 6.6067 18 1 6.3723 -7.2825 6.7671 19 6 4.9225 -5.9702 7.6744 20 7 3.8622 -5.2443 7.4387 21 14 5.4227 -6.3491 9.4339 22 1 6.6513 -7.1833 9.4305 23 1 5.6888 -5.0797 10.1571 24 1 4.3260 -7.0851 10.1127 25 6 5.8757 -6.6500 4.1778 26 6 5.7483 -6.0944 2.9394 27 6 5.8919 -1.5676 -0.4107 28 8 5.6296 -0.2210 0.0192 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6599 2.1310 -0.0030 33 1 4.1144 2.1404 0.0027 34 1 1.6633 -2.1333 0.0028 35 1 4.5132 -2.3855 2.1159 36 1 4.6447 -2.9991 3.8307 37 1 4.8572 -3.9837 6.0565 38 1 3.3344 -4.9024 8.1773 39 1 6.2221 -7.6677 4.2810 40 1 5.9936 -6.6730 2.0612 41 1 6.7558 -1.9783 0.1118 42 1 6.0374 -1.6068 -1.4902 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367000601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:22 Heat of formation + Delta-G solvation = -44.749099 kcal Electronic energy + Delta-G solvation = -25765.864879 eV Core-core repulsion = 22060.712988 eV Total energy + Delta-G solvation = -3705.151892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.41151 -40.60466 -38.97549 -38.70004 -35.81512 -35.69798 -32.90056 -32.80738 -31.69380 -31.31860 -29.80313 -27.77373 -27.41443 -24.68803 -23.76115 -22.95141 -22.59751 -21.97023 -21.32402 -19.39728 -18.87677 -18.30862 -17.71194 -17.40499 -17.18562 -16.42999 -16.00333 -15.76087 -15.62566 -15.49558 -15.06813 -14.92873 -14.61250 -14.51354 -14.47279 -13.98750 -13.80130 -13.67595 -13.28671 -13.23171 -13.03109 -12.93816 -12.87099 -12.62748 -12.59527 -12.40169 -11.96888 -11.78471 -11.72515 -11.40187 -11.14584 -10.86005 -10.26866 -9.95910 -9.60794 -9.44568 -9.06521 -8.81803 -6.50792 0.16780 0.33917 0.39486 1.12679 1.37346 1.41201 1.54911 2.04691 2.15969 2.19270 2.22404 2.73864 2.77348 3.24399 3.48345 3.67524 3.78886 4.02338 4.06704 4.15011 4.26802 4.28507 4.38375 4.40652 4.42608 4.54266 4.66064 4.75213 4.88970 4.90125 5.00710 5.05155 5.12469 5.13769 5.26792 5.31337 5.35486 5.39314 5.56121 5.59743 5.65001 5.78753 5.90704 5.97129 6.13906 6.19777 6.51329 6.57242 6.74626 6.85894 7.31793 8.13518 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.002877 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.660028 B = 9730.803348 C =10662.613155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.071 4.071 4 C -0.143 4.143 5 C 0.091 3.909 6 C -0.199 4.199 7 C -0.065 4.065 8 C 0.159 3.841 9 H 0.104 0.896 10 N -0.714 5.714 11 C 0.577 3.423 12 O -0.597 6.597 13 C -0.295 4.295 14 C -0.054 4.054 15 C -0.197 4.197 16 C 0.103 3.897 17 C -0.470 4.470 18 H 0.087 0.913 19 C 0.037 3.963 20 N -0.797 5.797 21 Si 0.988 3.012 22 H -0.256 1.256 23 H -0.261 1.261 24 H -0.263 1.263 25 C -0.253 4.253 26 C -0.029 4.029 27 C 0.043 3.957 28 O -0.314 6.314 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.405 0.595 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.297 0.703 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 13.606 -9.142 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.161 4.161 5 C 0.046 3.954 6 C -0.200 4.200 7 C -0.084 4.084 8 C 0.054 3.946 9 H 0.122 0.878 10 N -0.366 5.366 11 C 0.372 3.628 12 O -0.481 6.481 13 C -0.300 4.300 14 C -0.073 4.073 15 C -0.217 4.217 16 C 0.099 3.901 17 C -0.497 4.497 18 H 0.105 0.895 19 C -0.182 4.182 20 N -0.420 5.420 21 Si 0.808 3.192 22 H -0.180 1.180 23 H -0.185 1.185 24 H -0.187 1.187 25 C -0.272 4.272 26 C -0.048 4.048 27 C -0.033 4.033 28 O -0.229 6.229 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.143 0.857 35 H 0.241 0.759 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.565 13.415 -9.679 17.453 hybrid contribution 0.207 -0.508 1.010 1.149 sum -5.358 12.907 -8.669 16.445 Atomic orbital electron populations 1.20767 0.88737 1.03663 1.03228 1.20145 0.97719 0.92122 1.02050 1.21186 0.92266 0.99042 0.96414 1.20579 0.94189 0.95497 1.05833 1.19897 0.83089 0.95195 0.97232 1.20742 0.95062 0.93647 1.10552 1.20443 0.91379 0.99167 0.97401 1.20903 0.92965 0.94331 0.86401 0.87781 1.45827 1.68811 1.13438 1.08480 1.18403 0.74791 0.80717 0.88899 1.90615 1.53969 1.62650 1.40908 1.19114 1.21966 0.97462 0.91443 1.20678 0.96582 0.97873 0.92175 1.20988 1.08535 0.95757 0.96384 1.18138 0.87093 0.91591 0.93243 1.20164 1.20207 1.15978 0.93399 0.89516 1.26953 0.92659 0.92401 1.06186 1.69768 1.10800 1.24448 1.37014 0.85057 0.79705 0.79538 0.74921 1.17978 1.18499 1.18750 1.20874 1.14251 0.99824 0.92291 1.20503 0.94178 0.93613 0.96493 1.24339 0.98324 0.78733 1.01872 1.86814 1.20407 1.32790 1.82855 0.90086 0.91708 0.89815 0.81799 0.83602 0.85659 0.75882 0.86706 0.86965 0.89144 0.87566 0.87596 0.87811 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.02 71.24 0.71 -0.65 16 2 C -0.12 -2.20 5.89 -19.83 -0.12 -2.32 16 3 C -0.07 -1.16 9.68 22.21 0.21 -0.95 16 4 C -0.14 -2.85 10.06 22.45 0.23 -2.62 16 5 C 0.09 2.34 7.04 22.67 0.16 2.50 16 6 C -0.20 -5.21 5.82 -19.53 -0.11 -5.33 16 7 C -0.07 -1.51 9.70 22.18 0.22 -1.30 16 8 C 0.16 4.67 3.50 45.13 0.16 4.83 16 9 H 0.10 3.22 7.54 -2.39 -0.02 3.20 16 10 N -0.71 -24.35 5.10 -444.92 -2.27 -26.61 16 11 C 0.58 24.23 7.76 86.73 0.67 24.91 16 12 O -0.60 -27.61 15.96 -3.98 -0.06 -27.67 16 13 C -0.30 -13.55 5.89 -19.93 -0.12 -13.67 16 14 C -0.05 -2.43 9.47 22.25 0.21 -2.22 16 15 C -0.20 -9.86 8.64 22.47 0.19 -9.67 16 16 C 0.10 5.34 5.58 -21.28 -0.12 5.22 16 17 C -0.47 -23.70 9.04 23.46 0.21 -23.49 16 18 H 0.09 4.19 7.91 -2.91 -0.02 4.16 16 19 C 0.04 1.72 5.14 85.35 0.44 2.16 16 20 N -0.80 -38.10 10.95 21.87 0.24 -37.86 16 21 Si 0.99 34.65 29.60 68.60 2.03 36.68 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 23 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 24 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 25 C -0.25 -12.51 9.73 22.47 0.22 -12.29 16 26 C -0.03 -1.37 9.52 22.25 0.21 -1.16 16 27 C 0.04 1.14 7.73 72.57 0.56 1.70 16 28 O -0.31 -8.74 11.10 -95.11 -1.06 -9.80 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 31 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.40 13.13 6.65 -92.71 -0.62 12.51 16 36 H 0.12 4.40 6.37 -2.91 -0.02 4.38 16 37 H 0.11 5.71 6.16 -2.91 -0.02 5.69 16 38 H 0.30 12.57 8.29 -92.71 -0.77 11.80 16 39 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 40 H 0.11 4.86 7.63 -2.91 -0.02 4.84 16 41 H 0.10 2.89 8.10 -2.39 -0.02 2.87 16 42 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -61.50 357.58 3.27 -58.23 By element: Atomic # 1 Polarization: 40.93 SS G_CDS: 0.44 Total: 41.38 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 3.94 Total: -34.35 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -2.03 Total: -64.47 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.12 Total: -37.47 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.03 Total: 36.68 kcal Total: -61.50 3.27 -58.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367000601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.483 kcal (2) G-P(sol) polarization free energy of solvation -61.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds