Wall clock time and date at job start Tue Mar 31 2020 14:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38236 * 120.00148 * 2 1 4 4 C 1.38226 * 120.00015 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00269 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00333 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.99967 * 18.90933 * 6 5 4 8 8 C 1.54340 * 109.99388 * 257.86657 * 6 5 4 9 9 C 1.55152 * 103.01984 * 218.66439 * 8 6 5 10 10 C 1.54906 * 101.58358 * 35.30973 * 9 8 6 11 11 N 1.47021 * 109.88175 * 140.00162 * 6 5 4 12 12 S 1.65602 * 125.64838 * 298.39451 * 11 6 5 13 13 O 1.42101 * 104.27810 * 153.64633 * 12 11 6 14 14 O 1.42100 * 104.27444 * 25.79372 * 12 11 6 15 15 C 1.81396 * 104.45191 * 269.71820 * 12 11 6 16 16 C 1.52992 * 109.47323 * 179.97438 * 15 12 11 17 17 C 1.50700 * 109.47257 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99988 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00047 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99792 * 359.72305 * 19 17 16 21 21 Si 1.86795 * 120.00009 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47021 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47081 * 119.99727 * 21 19 17 24 24 H 1.48501 * 109.47213 * 240.00099 * 21 19 17 25 25 C 1.38243 * 119.99791 * 0.25437 * 5 4 3 26 26 C 1.38234 * 119.99542 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47365 * 89.99923 * 1 2 3 28 28 H 1.09001 * 109.47384 * 210.00715 * 1 2 3 29 29 H 1.09006 * 109.46638 * 330.00121 * 1 2 3 30 30 H 1.08000 * 119.99863 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99884 * 179.97438 * 4 3 2 32 32 H 1.08994 * 110.84526 * 100.19777 * 8 6 5 33 33 H 1.09000 * 110.66819 * 337.04881 * 8 6 5 34 34 H 1.09002 * 111.00770 * 277.23355 * 9 8 6 35 35 H 1.09002 * 111.00202 * 153.38166 * 9 8 6 36 36 H 1.09000 * 110.37085 * 204.15181 * 10 9 8 37 37 H 1.09007 * 110.46578 * 81.87458 * 10 9 8 38 38 H 1.09004 * 109.46981 * 59.99556 * 15 12 11 39 39 H 1.09005 * 109.47123 * 299.99974 * 15 12 11 40 40 H 1.09004 * 109.47330 * 59.99922 * 16 15 12 41 41 H 1.08997 * 109.47279 * 300.00409 * 16 15 12 42 42 H 0.97000 * 119.99468 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.99986 * 179.72614 * 25 5 4 44 44 H 1.07994 * 120.00186 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 1 6.1515 0.9689 0.3325 8 6 6.3064 -0.3049 -1.4174 9 6 7.5351 -1.2125 -1.1455 10 6 7.0586 -2.0198 0.0877 11 7 6.2787 -1.0592 0.8892 12 16 6.0051 -1.1603 2.5194 13 8 6.1041 -2.5486 2.8059 14 8 4.7857 -0.4572 2.7143 15 6 7.3881 -0.2558 3.2674 16 6 7.2471 -0.2772 4.7907 17 6 8.3964 0.4737 5.4122 18 1 9.1521 0.9211 4.7836 19 6 8.4838 0.5886 6.7835 20 7 7.5612 0.0476 7.5488 21 14 9.9080 1.5200 7.5538 22 1 10.7997 2.0346 6.4834 23 1 9.3824 2.6578 8.3503 24 1 10.6746 0.6077 8.4399 25 6 3.5805 -1.1972 -0.0053 26 6 2.1981 -1.1972 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5139 30 1 1.6583 2.1325 -0.0004 31 1 4.1206 2.1324 0.0001 32 1 6.6085 0.6115 -1.9242 33 1 5.5554 -0.8372 -2.0012 34 1 8.4157 -0.6165 -0.9059 35 1 7.7294 -1.8709 -1.9922 36 1 7.9141 -2.3826 0.6573 37 1 6.4292 -2.8539 -0.2228 38 1 7.3795 0.7762 2.9165 39 1 8.3280 -0.7286 2.9825 40 1 7.2555 -1.3091 5.1419 41 1 6.3073 0.1957 5.0753 42 1 7.6229 0.1282 8.5135 43 1 4.1205 -2.1325 -0.0098 44 1 1.6581 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369027228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:23 Heat of formation + Delta-G solvation = -57.167541 kcal Electronic energy + Delta-G solvation = -25774.991804 eV Core-core repulsion = 22204.745360 eV Total energy + Delta-G solvation = -3570.246444 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.87668 -37.96243 -36.52832 -35.35269 -33.88148 -33.02876 -31.15084 -31.00504 -30.70656 -29.32484 -26.01542 -25.57022 -22.77314 -22.56172 -21.58443 -21.38108 -20.53628 -18.48903 -17.54341 -16.78967 -16.43490 -15.79740 -15.24675 -15.20151 -14.91255 -14.77929 -14.55161 -13.90008 -13.71398 -13.55581 -13.32527 -13.28904 -13.17059 -12.71631 -12.50568 -12.31378 -12.09884 -11.73929 -11.64605 -11.51784 -11.47515 -11.31843 -11.20753 -11.09396 -11.05884 -10.94289 -10.82361 -10.74958 -10.38319 -10.37649 -9.76293 -9.32906 -8.83579 -8.74703 -8.50521 -8.30320 -6.12223 -4.17778 0.76543 1.44834 1.57158 3.08931 3.25174 3.32253 3.35801 3.84350 4.29304 4.32380 4.39979 4.53400 4.66406 4.85446 4.90882 4.93227 4.99677 5.10940 5.20155 5.22895 5.35669 5.41313 5.50867 5.53335 5.61087 5.66032 5.68050 5.68598 5.75404 5.78171 5.78732 5.80812 6.05551 6.10437 6.17869 6.25242 6.48733 6.49995 6.54955 6.69782 6.78944 7.15113 7.30506 7.36595 7.80898 8.17975 8.85783 9.46891 10.98881 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.003722 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.163560 B = 7521.537003 C = 8383.949449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.099 4.099 5 C -0.088 4.088 6 C 0.192 3.808 7 H 0.082 0.918 8 C -0.118 4.118 9 C -0.131 4.131 10 C 0.121 3.879 11 N -1.012 6.012 12 S 2.599 3.401 13 O -0.964 6.964 14 O -0.947 6.947 15 C -0.591 4.591 16 C 0.028 3.972 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.097 4.097 26 C -0.119 4.119 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.264 0.736 43 H 0.116 0.884 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -0.220 -21.563 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.118 4.118 5 C -0.089 4.089 6 C 0.086 3.914 7 H 0.100 0.900 8 C -0.157 4.157 9 C -0.170 4.170 10 C -0.005 4.005 11 N -0.848 5.848 12 S 2.699 3.301 13 O -0.954 6.954 14 O -0.937 6.937 15 C -0.724 4.724 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.115 4.115 26 C -0.137 4.137 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.134 0.866 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.279 -0.727 -20.904 22.147 hybrid contribution 1.353 0.821 0.629 1.703 sum -5.926 0.094 -20.275 21.123 Atomic orbital electron populations 1.20768 0.91548 1.02734 1.01836 1.19860 0.95810 0.93332 1.00093 1.20909 0.94081 0.97299 1.01392 1.20868 0.94194 0.97180 0.99508 1.20012 0.94998 0.93665 1.00267 1.20138 0.89456 0.91145 0.90694 0.89972 1.22681 0.97600 1.00583 0.94809 1.22813 0.97977 0.98529 0.97681 1.21941 0.94834 0.91548 0.92147 1.59083 1.66619 1.34541 1.24527 1.05534 0.77396 0.75562 0.71639 1.93535 1.87915 1.31252 1.82718 1.93585 1.41112 1.75467 1.83547 1.30506 1.17122 1.12943 1.11817 1.18957 0.99584 0.99126 0.83400 1.21041 1.08601 1.34716 0.91511 0.92013 1.25080 0.96494 0.95652 0.97306 1.69972 1.33765 1.44266 1.04822 0.86414 0.82001 0.79592 0.79287 1.19636 1.20761 1.20774 1.20858 0.94025 0.97567 0.99071 1.20940 0.94111 0.97383 1.01291 0.91536 0.91695 0.91659 0.86319 0.86155 0.90059 0.90424 0.90371 0.90072 0.90532 0.91558 0.86379 0.86464 0.94985 0.94848 0.92582 0.86577 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.09 -1.15 5.88 -104.62 -0.62 -1.76 16 3 C -0.12 -1.49 9.70 -39.59 -0.38 -1.88 16 4 C -0.10 -1.30 9.68 -39.59 -0.38 -1.68 16 5 C -0.09 -1.21 3.29 -104.62 -0.34 -1.56 16 6 C 0.19 2.34 3.24 -68.10 -0.22 2.12 16 7 H 0.08 0.93 8.02 -51.93 -0.42 0.52 16 8 C -0.12 -1.03 6.46 -24.89 -0.16 -1.19 16 9 C -0.13 -1.07 7.09 -24.59 -0.17 -1.24 16 10 C 0.12 1.35 6.89 -2.53 -0.02 1.34 16 11 N -1.01 -14.31 2.61 -105.63 -0.28 -14.58 16 12 S 2.60 49.37 5.64 -107.50 -0.61 48.77 16 13 O -0.96 -20.88 17.60 -57.54 -1.01 -21.89 16 14 O -0.95 -20.32 15.85 -57.54 -0.91 -21.23 16 15 C -0.59 -11.80 6.11 37.15 0.23 -11.57 16 16 C 0.03 0.75 4.98 -27.89 -0.14 0.61 16 17 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 21 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 C -0.10 -1.39 8.84 -39.58 -0.35 -1.74 16 26 C -0.12 -1.60 9.70 -39.58 -0.38 -1.99 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.31 8.04 -52.49 -0.42 0.89 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.66 7.76 -51.93 -0.40 0.26 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 39 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.12 1.60 7.74 -52.49 -0.41 1.20 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -35.54 373.61 -11.56 -47.09 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.10 Total: 0.53 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: -3.00 Total: -34.61 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.46 Total: -40.64 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.92 Total: -43.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 49.37 SS G_CDS: -0.61 Total: 48.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.54 -11.56 -47.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369027228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.074 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds