Wall clock time and date at job start Tue Mar 31 2020 14:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38236 * 120.00148 * 2 1 4 4 C 1.38226 * 120.00015 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00269 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00333 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.99967 * 18.90933 * 6 5 4 8 8 C 1.54340 * 109.99388 * 257.86657 * 6 5 4 9 9 C 1.55152 * 103.01984 * 218.66439 * 8 6 5 10 10 C 1.54906 * 101.58358 * 35.30973 * 9 8 6 11 11 N 1.47021 * 109.88175 * 140.00162 * 6 5 4 12 12 S 1.65602 * 125.64838 * 298.39451 * 11 6 5 13 13 O 1.42101 * 104.27810 * 153.64633 * 12 11 6 14 14 O 1.42100 * 104.27444 * 25.79372 * 12 11 6 15 15 C 1.81396 * 104.45191 * 269.71820 * 12 11 6 16 16 C 1.52992 * 109.47323 * 179.97438 * 15 12 11 17 17 C 1.50700 * 109.47257 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99988 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00047 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99792 * 359.72305 * 19 17 16 21 21 Si 1.86795 * 120.00009 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47021 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47081 * 119.99727 * 21 19 17 24 24 H 1.48501 * 109.47213 * 240.00099 * 21 19 17 25 25 C 1.38243 * 119.99791 * 0.25437 * 5 4 3 26 26 C 1.38234 * 119.99542 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47365 * 89.99923 * 1 2 3 28 28 H 1.09001 * 109.47384 * 210.00715 * 1 2 3 29 29 H 1.09006 * 109.46638 * 330.00121 * 1 2 3 30 30 H 1.08000 * 119.99863 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99884 * 179.97438 * 4 3 2 32 32 H 1.08994 * 110.84526 * 100.19777 * 8 6 5 33 33 H 1.09000 * 110.66819 * 337.04881 * 8 6 5 34 34 H 1.09002 * 111.00770 * 277.23355 * 9 8 6 35 35 H 1.09002 * 111.00202 * 153.38166 * 9 8 6 36 36 H 1.09000 * 110.37085 * 204.15181 * 10 9 8 37 37 H 1.09007 * 110.46578 * 81.87458 * 10 9 8 38 38 H 1.09004 * 109.46981 * 59.99556 * 15 12 11 39 39 H 1.09005 * 109.47123 * 299.99974 * 15 12 11 40 40 H 1.09004 * 109.47330 * 59.99922 * 16 15 12 41 41 H 1.08997 * 109.47279 * 300.00409 * 16 15 12 42 42 H 0.97000 * 119.99468 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.99986 * 179.72614 * 25 5 4 44 44 H 1.07994 * 120.00186 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 1 6.1515 0.9689 0.3325 8 6 6.3064 -0.3049 -1.4174 9 6 7.5351 -1.2125 -1.1455 10 6 7.0586 -2.0198 0.0877 11 7 6.2787 -1.0592 0.8892 12 16 6.0051 -1.1603 2.5194 13 8 6.1041 -2.5486 2.8059 14 8 4.7857 -0.4572 2.7143 15 6 7.3881 -0.2558 3.2674 16 6 7.2471 -0.2772 4.7907 17 6 8.3964 0.4737 5.4122 18 1 9.1521 0.9211 4.7836 19 6 8.4838 0.5886 6.7835 20 7 7.5612 0.0476 7.5488 21 14 9.9080 1.5200 7.5538 22 1 10.7997 2.0346 6.4834 23 1 9.3824 2.6578 8.3503 24 1 10.6746 0.6077 8.4399 25 6 3.5805 -1.1972 -0.0053 26 6 2.1981 -1.1972 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5139 30 1 1.6583 2.1325 -0.0004 31 1 4.1206 2.1324 0.0001 32 1 6.6085 0.6115 -1.9242 33 1 5.5554 -0.8372 -2.0012 34 1 8.4157 -0.6165 -0.9059 35 1 7.7294 -1.8709 -1.9922 36 1 7.9141 -2.3826 0.6573 37 1 6.4292 -2.8539 -0.2228 38 1 7.3795 0.7762 2.9165 39 1 8.3280 -0.7286 2.9825 40 1 7.2555 -1.3091 5.1419 41 1 6.3073 0.1957 5.0753 42 1 7.6229 0.1282 8.5135 43 1 4.1205 -2.1325 -0.0098 44 1 1.6581 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369027228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:22 Heat of formation + Delta-G solvation = -79.367506 kcal Electronic energy + Delta-G solvation = -25775.954467 eV Core-core repulsion = 22204.745360 eV Total energy + Delta-G solvation = -3571.209107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.81915 -38.88122 -38.15855 -36.99161 -35.93309 -33.93054 -33.16218 -31.94250 -31.67867 -30.17009 -27.63597 -26.84401 -23.93914 -23.70136 -23.08776 -22.27310 -21.55036 -19.82495 -19.11620 -18.34144 -17.74234 -17.11890 -16.80486 -16.56244 -16.29759 -15.88433 -15.80648 -15.22864 -14.84901 -14.62133 -14.50418 -14.31191 -14.21761 -14.08563 -13.76298 -13.57006 -13.28610 -13.15022 -13.02728 -12.97330 -12.91246 -12.80460 -12.58479 -12.42542 -12.30851 -12.12076 -12.03189 -11.88975 -11.77411 -11.71529 -11.49410 -11.17864 -10.68605 -10.03542 -9.75487 -9.27218 -8.28738 -6.43606 -0.75956 0.46959 0.56514 1.39275 1.40401 1.53838 1.75975 2.36195 2.84046 2.87300 3.04333 3.08734 3.68283 3.70297 3.84675 3.98511 3.99159 4.09941 4.11602 4.16876 4.20845 4.36573 4.52199 4.62127 4.64025 4.69124 4.79636 4.84203 4.86778 4.97888 4.99612 5.01726 5.06772 5.17939 5.20595 5.21865 5.26802 5.30574 5.40574 5.51570 5.56646 5.64956 5.73907 5.79017 6.02338 6.19951 6.69990 7.26884 8.83928 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.003722 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.163560 B = 7521.537003 C = 8383.949449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C -0.129 4.129 4 C -0.114 4.114 5 C -0.102 4.102 6 C 0.181 3.819 7 H 0.092 0.908 8 C -0.108 4.108 9 C -0.118 4.118 10 C 0.105 3.895 11 N -1.005 6.005 12 S 2.622 3.378 13 O -0.997 6.997 14 O -0.976 6.976 15 C -0.589 4.589 16 C 0.022 3.978 17 C -0.539 4.539 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.977 3.023 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.119 4.119 26 C -0.138 4.138 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.003 0.997 41 H 0.004 0.996 42 H 0.268 0.732 43 H 0.111 0.889 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 1.255 -23.732 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.104 4.104 6 C 0.076 3.924 7 H 0.110 0.890 8 C -0.147 4.147 9 C -0.157 4.157 10 C -0.019 4.019 11 N -0.844 5.844 12 S 2.721 3.279 13 O -0.988 6.988 14 O -0.967 6.967 15 C -0.721 4.721 16 C -0.017 4.017 17 C -0.578 4.578 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.800 3.200 22 H -0.178 1.178 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.138 4.138 26 C -0.156 4.156 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.021 0.979 41 H 0.023 0.977 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.883 0.748 -23.077 23.827 hybrid contribution 0.846 0.327 1.230 1.528 sum -5.037 1.074 -21.847 22.446 Atomic orbital electron populations 1.20809 0.89470 1.03217 1.03154 1.20264 0.97534 0.93081 0.99374 1.21287 0.94310 0.98290 1.00847 1.21222 0.94795 0.97814 0.99386 1.20264 0.96034 0.93717 1.00345 1.20517 0.88735 0.90863 0.92311 0.88967 1.22688 0.97648 1.01926 0.92436 1.22821 0.97828 0.98343 0.96694 1.22309 0.94684 0.91702 0.93217 1.58617 1.66996 1.35969 1.22772 1.04479 0.76424 0.74300 0.72727 1.93483 1.88126 1.33000 1.84154 1.93537 1.42465 1.75824 1.84852 1.30404 1.19103 1.15025 1.07530 1.18799 0.98080 0.96869 0.87902 1.21531 1.09245 1.34753 0.92281 0.90559 1.26168 0.99545 0.96564 0.98056 1.70121 1.36131 1.45884 1.05297 0.85224 0.78261 0.78017 0.78508 1.17782 1.20237 1.20235 1.21001 0.94658 0.97813 1.00279 1.21231 0.94230 0.98490 1.01691 0.89709 0.91522 0.90861 0.84156 0.84267 0.87503 0.90316 0.89272 0.87497 0.90346 0.91375 0.84245 0.84346 0.97917 0.97724 0.92332 0.87091 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.01 71.24 0.71 -1.24 16 2 C -0.10 -2.53 5.88 -19.86 -0.12 -2.65 16 3 C -0.13 -3.13 9.70 22.27 0.22 -2.92 16 4 C -0.11 -2.87 9.68 22.27 0.22 -2.65 16 5 C -0.10 -2.76 3.29 -19.87 -0.07 -2.82 16 6 C 0.18 4.12 3.24 44.60 0.14 4.26 16 7 H 0.09 1.89 8.02 -2.39 -0.02 1.87 16 8 C -0.11 -1.55 6.46 31.79 0.21 -1.35 16 9 C -0.12 -1.52 7.09 31.98 0.23 -1.29 16 10 C 0.11 2.19 6.89 86.85 0.60 2.79 16 11 N -1.01 -27.54 2.61 -488.09 -1.27 -28.81 16 12 S 2.62 101.50 5.64 -56.49 -0.32 101.18 16 13 O -1.00 -44.67 17.60 -127.65 -2.25 -46.92 16 14 O -0.98 -43.20 15.85 -127.65 -2.02 -45.22 16 15 C -0.59 -23.55 6.11 71.98 0.44 -23.11 16 16 C 0.02 1.22 4.98 29.85 0.15 1.37 16 17 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 18 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 19 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 20 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 21 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 22 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 C -0.12 -3.44 8.84 22.27 0.20 -3.25 16 26 C -0.14 -3.76 9.70 22.27 0.22 -3.54 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 29 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 30 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.14 2.81 8.04 -2.91 -0.02 2.79 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.14 7.76 -2.39 -0.02 1.13 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 39 H 0.14 4.87 8.14 -2.39 -0.02 4.85 16 40 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.11 3.16 7.74 -2.91 -0.02 3.14 16 44 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -79.48 373.61 1.25 -78.23 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.96 Total: 19.91 kcal Atomic # 6 Polarization: -70.34 SS G_CDS: 3.83 Total: -66.51 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -0.99 Total: -86.34 kcal Atomic # 8 Polarization: -87.87 SS G_CDS: -4.27 Total: -92.14 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 101.50 SS G_CDS: -0.32 Total: 101.18 kcal Total: -79.48 1.25 -78.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369027228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.138 kcal (2) G-P(sol) polarization free energy of solvation -79.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds