Wall clock time and date at job start Tue Mar 31 2020 14:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00169 * 2 1 4 4 C 1.38228 * 120.00296 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99719 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.99814 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.99772 * 341.08809 * 6 5 4 8 8 C 1.54315 * 109.77503 * 102.24916 * 6 5 4 9 9 C 1.55151 * 102.85974 * 141.88614 * 8 6 5 10 10 C 1.54911 * 101.58555 * 324.29849 * 9 8 6 11 11 N 1.47018 * 109.87958 * 219.99993 * 6 5 4 12 12 S 1.65601 * 125.65323 * 61.67597 * 11 6 5 13 13 O 1.42096 * 104.27862 * 153.64798 * 12 11 6 14 14 O 1.42105 * 104.27565 * 25.78455 * 12 11 6 15 15 C 1.81399 * 104.44935 * 269.71812 * 12 11 6 16 16 C 1.53002 * 109.47165 * 179.97438 * 15 12 11 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.38234 * 120.00318 * 0.27400 * 5 4 3 26 26 C 1.38234 * 120.00187 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46941 * 90.00050 * 1 2 3 28 28 H 1.09002 * 109.47207 * 209.99785 * 1 2 3 29 29 H 1.09003 * 109.47252 * 329.99795 * 1 2 3 30 30 H 1.07997 * 119.99874 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.00472 * 180.02562 * 4 3 2 32 32 H 1.08995 * 110.92531 * 23.46740 * 8 6 5 33 33 H 1.09000 * 110.58743 * 260.14346 * 8 6 5 34 34 H 1.09012 * 111.00077 * 206.22974 * 9 8 6 35 35 H 1.08996 * 111.00891 * 82.37989 * 9 8 6 36 36 H 1.08994 * 110.36643 * 278.17836 * 10 9 8 37 37 H 1.08996 * 110.46324 * 155.89456 * 10 9 8 38 38 H 1.09004 * 109.47568 * 59.99655 * 15 12 11 39 39 H 1.08996 * 109.47243 * 299.99928 * 15 12 11 40 40 H 1.09000 * 109.46986 * 60.00120 * 16 15 12 41 41 H 1.08993 * 109.47662 * 299.99897 * 16 15 12 42 42 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.00021 * 179.73165 * 25 5 4 44 44 H 1.08003 * 119.99938 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 1 6.1518 0.9689 -0.3294 8 6 6.2997 -0.3075 1.4224 9 6 7.5367 -1.2034 1.1498 10 6 7.0679 -2.0139 -0.0844 11 7 6.2794 -1.0595 -0.8851 12 16 6.0085 -1.1605 -2.5156 13 8 7.1191 -1.8958 -3.0105 14 8 5.7820 0.1837 -2.9172 15 6 4.4847 -2.1338 -2.6619 16 6 4.1245 -2.2983 -4.1398 17 6 2.8589 -3.1075 -4.2612 18 1 2.3610 -3.4679 -3.3732 19 6 2.3366 -3.3875 -5.5062 20 7 1.2319 -4.0932 -5.6121 21 14 3.1981 -2.7648 -7.0422 22 1 2.6697 -1.4230 -7.3965 23 1 4.6580 -2.6703 -6.7870 24 1 2.9515 -3.7060 -8.1641 25 6 3.5805 -1.1972 -0.0036 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1324 0.0010 32 1 5.5522 -0.8481 2.0028 33 1 6.5934 0.6112 1.9302 34 1 7.7369 -1.8610 1.9958 35 1 8.4119 -0.5992 0.9110 36 1 6.4456 -2.8529 0.2268 37 1 7.9257 -2.3697 -0.6549 38 1 3.6740 -1.6194 -2.1458 39 1 4.6361 -3.1154 -2.2130 40 1 4.9350 -2.8126 -4.6562 41 1 3.9729 -1.3166 -4.5883 42 1 0.8643 -4.2900 -6.4880 43 1 4.1206 -2.1324 -0.0071 44 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369027229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:26 Heat of formation + Delta-G solvation = -53.460154 kcal Electronic energy + Delta-G solvation = -26427.737868 eV Core-core repulsion = 22857.652188 eV Total energy + Delta-G solvation = -3570.085680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.96571 -37.99255 -36.68710 -35.52471 -33.94823 -33.02893 -31.54376 -31.05931 -30.67577 -29.30135 -26.01713 -25.88501 -22.82910 -22.50331 -21.54168 -21.09212 -20.54891 -18.53571 -17.75611 -16.96926 -16.65179 -15.86499 -15.40565 -15.21025 -14.92094 -14.85850 -14.30963 -13.89616 -13.77038 -13.56692 -13.39608 -13.31275 -13.22907 -12.77796 -12.67229 -12.27848 -12.06095 -11.85567 -11.74830 -11.64437 -11.59330 -11.41252 -11.30061 -11.20000 -11.13457 -11.03668 -10.81797 -10.73809 -10.42095 -10.13432 -9.71976 -9.40434 -8.90690 -8.71680 -8.63684 -8.37514 -6.14650 -4.14806 0.65950 1.36132 1.52469 2.96265 3.27596 3.34659 3.39566 3.80615 4.20728 4.25429 4.37750 4.50370 4.60892 4.80017 4.91065 4.93798 5.03855 5.09766 5.17615 5.24067 5.36911 5.40902 5.49968 5.54560 5.61964 5.63619 5.68656 5.71354 5.72488 5.78573 5.81519 5.89668 6.02312 6.08940 6.19876 6.21610 6.34302 6.44763 6.52257 6.71830 6.72297 6.85628 6.97733 7.10175 7.57352 8.39487 8.86809 9.45692 10.97769 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.005804 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.860636 B = 4823.309397 C = 6568.916387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.097 4.097 5 C -0.123 4.123 6 C 0.196 3.804 7 H 0.087 0.913 8 C -0.118 4.118 9 C -0.128 4.128 10 C 0.113 3.887 11 N -1.011 6.011 12 S 2.599 3.401 13 O -0.965 6.965 14 O -0.958 6.958 15 C -0.588 4.588 16 C -0.005 4.005 17 C -0.513 4.513 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.866 3.134 22 H -0.272 1.272 23 H -0.262 1.262 24 H -0.282 1.282 25 C -0.105 4.105 26 C -0.113 4.113 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.266 0.734 43 H 0.124 0.876 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.409 8.306 17.777 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.115 4.115 5 C -0.125 4.125 6 C 0.089 3.911 7 H 0.105 0.895 8 C -0.157 4.157 9 C -0.167 4.167 10 C -0.012 4.012 11 N -0.847 5.847 12 S 2.699 3.301 13 O -0.955 6.955 14 O -0.949 6.949 15 C -0.721 4.721 16 C -0.044 4.044 17 C -0.552 4.552 18 H 0.096 0.904 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.693 3.307 22 H -0.197 1.197 23 H -0.187 1.187 24 H -0.207 1.207 25 C -0.123 4.123 26 C -0.131 4.131 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.142 0.858 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.873 8.615 16.888 20.166 hybrid contribution -0.305 -0.151 -0.698 0.777 sum 6.568 8.464 16.190 19.414 Atomic orbital electron populations 1.20819 0.91230 1.02375 1.02865 1.19970 0.96198 0.93207 0.98562 1.20981 0.94024 0.97527 1.01477 1.20924 0.94142 0.97292 0.99165 1.20224 0.95368 0.93801 1.03067 1.20133 0.89010 0.91494 0.90426 0.89493 1.22691 0.97569 1.00569 0.94830 1.22765 0.97921 0.98538 0.97472 1.22045 0.95244 0.91659 0.92281 1.58928 1.65247 1.34844 1.25631 1.05386 0.77625 0.75748 0.71300 1.93532 1.49879 1.74746 1.77372 1.93534 1.87269 1.34359 1.79724 1.30579 1.18631 1.13814 1.09068 1.19391 0.99688 0.98398 0.86934 1.20813 1.06662 1.33234 0.94503 0.90395 1.24958 0.94657 0.94471 0.98922 1.69880 1.20331 1.38783 1.24454 0.86967 0.81164 0.79385 0.83215 1.19692 1.18669 1.20741 1.21032 0.94295 0.97725 0.99248 1.21086 0.94043 0.97933 1.00071 0.90635 0.91531 0.91821 0.86098 0.85944 0.90200 0.90163 0.89997 0.90595 0.91595 0.89753 0.84900 0.85835 0.95157 0.95589 0.92457 0.85763 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.01 36.00 0.36 -0.93 16 2 C -0.08 -1.05 5.88 -104.62 -0.62 -1.66 16 3 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 4 C -0.10 -1.23 9.68 -39.58 -0.38 -1.61 16 5 C -0.12 -1.62 4.56 -104.62 -0.48 -2.10 16 6 C 0.20 2.37 2.94 -68.11 -0.20 2.17 16 7 H 0.09 1.07 8.02 -51.93 -0.42 0.65 16 8 C -0.12 -1.02 6.45 -24.90 -0.16 -1.18 16 9 C -0.13 -1.04 7.08 -24.58 -0.17 -1.22 16 10 C 0.11 1.23 7.08 -2.52 -0.02 1.22 16 11 N -1.01 -14.13 2.59 -105.64 -0.27 -14.40 16 12 S 2.60 48.50 5.35 -107.50 -0.58 47.92 16 13 O -0.96 -20.11 17.28 -57.54 -0.99 -21.10 16 14 O -0.96 -20.18 17.60 -57.54 -1.01 -21.20 16 15 C -0.59 -11.57 4.92 37.16 0.18 -11.38 16 16 C 0.00 -0.12 4.05 -27.88 -0.11 -0.23 16 17 C -0.51 -14.47 9.66 -34.44 -0.33 -14.80 16 18 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 21 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C -0.10 -1.43 6.02 -39.58 -0.24 -1.66 16 26 C -0.11 -1.58 9.47 -39.58 -0.37 -1.96 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.12 1.31 8.04 -52.49 -0.42 0.89 16 32 H 0.08 0.67 7.78 -51.93 -0.40 0.26 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.96 7.66 -51.93 -0.40 0.56 16 38 H 0.13 2.53 5.20 -51.92 -0.27 2.26 16 39 H 0.12 2.18 8.14 -51.93 -0.42 1.75 16 40 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 41 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.12 1.56 7.29 -52.49 -0.38 1.18 16 44 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -34.70 364.14 -11.16 -45.85 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.87 Total: 1.91 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: -3.02 Total: -35.26 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.50 Total: -40.79 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -2.01 Total: -42.30 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.58 Total: 47.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.70 -11.16 -45.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369027229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.605 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds