Wall clock time and date at job start Tue Mar 31 2020 14:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00169 * 2 1 4 4 C 1.38228 * 120.00296 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99719 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.99814 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.99772 * 341.08809 * 6 5 4 8 8 C 1.54315 * 109.77503 * 102.24916 * 6 5 4 9 9 C 1.55151 * 102.85974 * 141.88614 * 8 6 5 10 10 C 1.54911 * 101.58555 * 324.29849 * 9 8 6 11 11 N 1.47018 * 109.87958 * 219.99993 * 6 5 4 12 12 S 1.65601 * 125.65323 * 61.67597 * 11 6 5 13 13 O 1.42096 * 104.27862 * 153.64798 * 12 11 6 14 14 O 1.42105 * 104.27565 * 25.78455 * 12 11 6 15 15 C 1.81399 * 104.44935 * 269.71812 * 12 11 6 16 16 C 1.53002 * 109.47165 * 179.97438 * 15 12 11 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.38234 * 120.00318 * 0.27400 * 5 4 3 26 26 C 1.38234 * 120.00187 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46941 * 90.00050 * 1 2 3 28 28 H 1.09002 * 109.47207 * 209.99785 * 1 2 3 29 29 H 1.09003 * 109.47252 * 329.99795 * 1 2 3 30 30 H 1.07997 * 119.99874 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.00472 * 180.02562 * 4 3 2 32 32 H 1.08995 * 110.92531 * 23.46740 * 8 6 5 33 33 H 1.09000 * 110.58743 * 260.14346 * 8 6 5 34 34 H 1.09012 * 111.00077 * 206.22974 * 9 8 6 35 35 H 1.08996 * 111.00891 * 82.37989 * 9 8 6 36 36 H 1.08994 * 110.36643 * 278.17836 * 10 9 8 37 37 H 1.08996 * 110.46324 * 155.89456 * 10 9 8 38 38 H 1.09004 * 109.47568 * 59.99655 * 15 12 11 39 39 H 1.08996 * 109.47243 * 299.99928 * 15 12 11 40 40 H 1.09000 * 109.46986 * 60.00120 * 16 15 12 41 41 H 1.08993 * 109.47662 * 299.99897 * 16 15 12 42 42 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.00021 * 179.73165 * 25 5 4 44 44 H 1.08003 * 119.99938 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 1 6.1518 0.9689 -0.3294 8 6 6.2997 -0.3075 1.4224 9 6 7.5367 -1.2034 1.1498 10 6 7.0679 -2.0139 -0.0844 11 7 6.2794 -1.0595 -0.8851 12 16 6.0085 -1.1605 -2.5156 13 8 7.1191 -1.8958 -3.0105 14 8 5.7820 0.1837 -2.9172 15 6 4.4847 -2.1338 -2.6619 16 6 4.1245 -2.2983 -4.1398 17 6 2.8589 -3.1075 -4.2612 18 1 2.3610 -3.4679 -3.3732 19 6 2.3366 -3.3875 -5.5062 20 7 1.2319 -4.0932 -5.6121 21 14 3.1981 -2.7648 -7.0422 22 1 2.6697 -1.4230 -7.3965 23 1 4.6580 -2.6703 -6.7870 24 1 2.9515 -3.7060 -8.1641 25 6 3.5805 -1.1972 -0.0036 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1324 0.0010 32 1 5.5522 -0.8481 2.0028 33 1 6.5934 0.6112 1.9302 34 1 7.7369 -1.8610 1.9958 35 1 8.4119 -0.5992 0.9110 36 1 6.4456 -2.8529 0.2268 37 1 7.9257 -2.3697 -0.6549 38 1 3.6740 -1.6194 -2.1458 39 1 4.6361 -3.1154 -2.2130 40 1 4.9350 -2.8126 -4.6562 41 1 3.9729 -1.3166 -4.5883 42 1 0.8643 -4.2900 -6.4880 43 1 4.1206 -2.1324 -0.0071 44 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369027229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:25 Heat of formation + Delta-G solvation = -75.345409 kcal Electronic energy + Delta-G solvation = -26428.686884 eV Core-core repulsion = 22857.652188 eV Total energy + Delta-G solvation = -3571.034696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92446 -38.92229 -38.25779 -37.11025 -35.94517 -34.00435 -33.51094 -32.04355 -31.68258 -30.18280 -27.90998 -26.86583 -23.96859 -23.52482 -22.85352 -22.31693 -21.59049 -19.88495 -19.39964 -18.61199 -17.75559 -17.21799 -16.85119 -16.44272 -16.34648 -15.89271 -15.86214 -15.37802 -14.91655 -14.82858 -14.57441 -14.39463 -14.27419 -14.11750 -13.83380 -13.53269 -13.33160 -13.30275 -13.20627 -13.07465 -12.97585 -12.92532 -12.61900 -12.50642 -12.27398 -12.04137 -11.96711 -11.90229 -11.73905 -11.73315 -11.50156 -11.32810 -10.86297 -10.05084 -9.75781 -9.37071 -8.38171 -6.42953 -0.82117 0.35476 0.50851 1.28115 1.29962 1.39992 1.65628 2.26926 2.71490 2.80323 2.95315 3.01800 3.63334 3.67295 3.82255 3.88096 3.94739 4.06497 4.09901 4.16613 4.22739 4.37030 4.50858 4.51628 4.60581 4.64119 4.78770 4.81856 4.86365 4.95546 4.98003 4.99789 5.01879 5.04590 5.08089 5.17340 5.22520 5.27422 5.36744 5.44202 5.50996 5.53454 5.71657 5.73260 6.12141 6.15912 6.61532 7.20740 8.77285 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.005804 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.860636 B = 4823.309397 C = 6568.916387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.106 4.106 5 C -0.130 4.130 6 C 0.188 3.812 7 H 0.087 0.913 8 C -0.108 4.108 9 C -0.117 4.117 10 C 0.098 3.902 11 N -1.005 6.005 12 S 2.624 3.376 13 O -0.988 6.988 14 O -0.984 6.984 15 C -0.593 4.593 16 C -0.012 4.012 17 C -0.520 4.520 18 H 0.050 0.950 19 C 0.018 3.982 20 N -0.937 5.937 21 Si 0.919 3.081 22 H -0.262 1.262 23 H -0.253 1.253 24 H -0.270 1.270 25 C -0.116 4.116 26 C -0.136 4.136 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.030 0.970 41 H 0.024 0.976 42 H 0.270 0.730 43 H 0.129 0.871 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.983 9.610 19.173 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.124 4.124 5 C -0.132 4.132 6 C 0.082 3.918 7 H 0.105 0.895 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.026 4.026 11 N -0.844 5.844 12 S 2.723 3.277 13 O -0.978 6.978 14 O -0.974 6.974 15 C -0.724 4.724 16 C -0.051 4.051 17 C -0.559 4.559 18 H 0.069 0.931 19 C -0.181 4.181 20 N -0.576 5.576 21 Si 0.742 3.258 22 H -0.187 1.187 23 H -0.176 1.176 24 H -0.195 1.195 25 C -0.134 4.134 26 C -0.154 4.154 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.147 0.853 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.438 9.907 18.279 22.438 hybrid contribution -0.821 -0.565 -1.000 1.413 sum 7.617 9.342 17.279 21.067 Atomic orbital electron populations 1.20843 0.90106 1.03796 1.02435 1.20273 0.97307 0.93323 0.98539 1.21303 0.94323 0.98161 1.00756 1.21267 0.94488 0.98044 0.98645 1.20412 0.96085 0.93785 1.02895 1.20437 0.88399 0.90842 0.92095 0.89502 1.22702 0.97684 1.01879 0.92435 1.22783 0.97640 0.98436 0.96751 1.22427 0.95038 0.92123 0.93026 1.58560 1.65282 1.36148 1.24394 1.04312 0.76395 0.74557 0.72455 1.93497 1.50237 1.75164 1.78924 1.93493 1.87356 1.35356 1.81236 1.30590 1.20342 1.15513 1.05957 1.19326 0.97915 0.97430 0.90400 1.21070 1.07880 1.33266 0.93686 0.93125 1.25784 0.95345 0.94750 1.02183 1.69996 1.21893 1.40281 1.25478 0.86118 0.80588 0.79435 0.79701 1.18661 1.17648 1.19513 1.21142 0.94253 0.98318 0.99680 1.21253 0.94635 0.98319 1.01159 0.91858 0.91042 0.89587 0.83891 0.83965 0.89681 0.87834 0.87197 0.90067 0.90057 0.90376 0.84610 0.84350 0.95174 0.95800 0.92112 0.85317 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 10.01 71.24 0.71 -1.81 16 2 C -0.09 -2.47 5.88 -19.87 -0.12 -2.59 16 3 C -0.13 -3.04 9.70 22.27 0.22 -2.82 16 4 C -0.11 -2.53 9.68 22.27 0.22 -2.31 16 5 C -0.13 -3.26 4.56 -19.86 -0.09 -3.35 16 6 C 0.19 4.15 2.94 44.60 0.13 4.28 16 7 H 0.09 1.94 8.02 -2.39 -0.02 1.92 16 8 C -0.11 -1.49 6.45 31.78 0.20 -1.28 16 9 C -0.12 -1.47 7.08 31.99 0.23 -1.25 16 10 C 0.10 1.91 7.08 86.85 0.61 2.53 16 11 N -1.01 -26.45 2.59 -488.13 -1.26 -27.71 16 12 S 2.62 96.06 5.35 -56.49 -0.30 95.76 16 13 O -0.99 -40.46 17.28 -127.65 -2.21 -42.66 16 14 O -0.98 -40.82 17.60 -127.65 -2.25 -43.06 16 15 C -0.59 -23.41 4.92 71.98 0.35 -23.06 16 16 C -0.01 -0.58 4.05 29.85 0.12 -0.46 16 17 C -0.52 -30.03 9.66 25.60 0.25 -29.78 16 18 H 0.05 3.11 7.99 -2.91 -0.02 3.08 16 19 C 0.02 1.07 5.47 84.66 0.46 1.53 16 20 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 21 Si 0.92 44.79 27.47 68.60 1.88 46.68 16 22 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 C -0.12 -3.10 6.02 22.27 0.13 -2.97 16 26 C -0.14 -3.85 9.47 22.27 0.21 -3.63 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 29 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 30 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.14 2.72 8.04 -2.91 -0.02 2.69 16 32 H 0.08 1.13 7.78 -2.39 -0.02 1.11 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.64 7.66 -2.39 -0.02 1.62 16 38 H 0.14 5.27 5.20 -2.39 -0.01 5.25 16 39 H 0.14 4.91 8.14 -2.39 -0.02 4.89 16 40 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 41 H 0.02 1.18 7.57 -2.39 -0.02 1.16 16 42 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 43 H 0.13 3.18 7.29 -2.91 -0.02 3.16 16 44 H 0.12 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -75.44 364.14 0.73 -74.71 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.92 Total: 20.91 kcal Atomic # 6 Polarization: -70.62 SS G_CDS: 3.64 Total: -66.97 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -0.96 Total: -85.35 kcal Atomic # 8 Polarization: -81.28 SS G_CDS: -4.45 Total: -85.73 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Atomic # 16 Polarization: 96.06 SS G_CDS: -0.30 Total: 95.76 kcal Total: -75.44 0.73 -74.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369027229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.636 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds