Wall clock time and date at job start Tue Mar 31 2020 13:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34450 * 124.92040 * 2 1 4 4 C 1.34815 * 110.88863 * 180.02562 * 3 2 1 5 5 C 1.38938 * 133.49669 * 179.97438 * 4 3 2 6 6 C 1.37851 * 119.81764 * 180.02562 * 5 4 3 7 7 C 1.38745 * 120.68540 * 0.02562 * 6 5 4 8 8 C 1.36732 * 120.41558 * 0.02562 * 7 6 5 9 9 C 1.39406 * 119.72069 * 359.97438 * 8 7 6 10 10 C 1.33991 * 124.92444 * 180.02562 * 2 1 3 11 11 C 1.50697 * 126.90908 * 0.02562 * 10 2 1 12 12 N 1.46504 * 109.47105 * 269.97235 * 11 10 2 13 13 C 1.39673 * 120.00499 * 179.97438 * 12 11 10 14 14 C 1.39008 * 120.03827 * 359.72658 * 13 12 11 15 15 C 1.38142 * 120.06050 * 179.69877 * 14 13 12 16 16 C 1.38167 * 120.14397 * 0.59938 * 15 14 13 17 17 C 1.38920 * 120.07926 * 359.67683 * 16 15 14 18 18 O 1.35751 * 120.03129 * 180.02562 * 17 16 15 19 19 C 1.34835 * 116.99739 * 174.48546 * 18 17 16 20 20 H 1.07997 * 120.00145 * 5.06221 * 19 18 17 21 21 C 1.38652 * 119.99646 * 185.05534 * 19 18 17 22 22 N 1.31556 * 120.00036 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99849 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47211 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46914 * 120.00122 * 23 21 19 26 26 H 1.48495 * 109.47323 * 240.00461 * 23 21 19 27 27 C 1.38748 * 120.03954 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47149 * 269.99458 * 1 2 3 29 29 H 1.08990 * 109.47273 * 29.99910 * 1 2 3 30 30 H 1.09001 * 109.47069 * 149.99710 * 1 2 3 31 31 H 1.07996 * 120.09029 * 0.05118 * 5 4 3 32 32 H 1.07996 * 119.65713 * 180.27699 * 6 5 4 33 33 H 1.07998 * 119.78936 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.14420 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47453 * 29.96886 * 11 10 2 36 36 H 1.09000 * 109.48144 * 149.97140 * 11 10 2 37 37 H 0.96998 * 119.99618 * 359.97438 * 12 11 10 38 38 H 1.08007 * 119.96774 * 359.97438 * 14 13 12 39 39 H 1.08003 * 119.93196 * 180.28057 * 15 14 13 40 40 H 1.08003 * 119.96369 * 179.70525 * 16 15 14 41 41 H 0.97009 * 119.99814 * 180.02562 * 22 21 19 42 42 H 1.07995 * 120.07325 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1024 0.0000 4 6 3.5846 0.7755 -0.0006 5 6 4.7567 1.5215 -0.0013 6 6 5.9771 0.8805 -0.0023 7 6 6.0491 -0.5051 -0.0031 8 6 4.9075 -1.2576 -0.0035 9 6 3.6642 -0.6271 -0.0025 10 6 2.2741 -1.0986 -0.0005 11 6 1.8043 -2.5305 -0.0017 12 7 1.6521 -2.9956 1.3792 13 6 1.2235 -4.3004 1.6335 14 6 0.9356 -5.1566 0.5769 15 6 0.5176 -6.4492 0.8278 16 6 0.3725 -6.8912 2.1288 17 6 0.6531 -6.0388 3.1892 18 8 0.5107 -6.4743 4.4670 19 6 0.9077 -5.6374 5.4468 20 1 1.2405 -4.6394 5.2026 21 6 0.8887 -6.0580 6.7678 22 7 0.4837 -7.2738 7.0652 23 14 1.4394 -4.8988 8.1251 24 1 1.8453 -3.5993 7.5319 25 1 0.3185 -4.6804 9.0746 26 1 2.5915 -5.4947 8.8480 27 6 1.0787 -4.7416 2.9410 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 4.7119 2.6005 -0.0006 32 1 6.8866 1.4628 0.0017 33 1 7.0130 -0.9923 -0.0043 34 1 4.9687 -2.3359 -0.0038 35 1 0.8453 -2.5978 -0.5154 36 1 2.5364 -3.1529 -0.5161 37 1 1.8491 -2.3974 2.1169 38 1 1.0430 -4.8123 -0.4412 39 1 0.2988 -7.1140 0.0053 40 1 0.0409 -7.9009 2.3216 41 1 0.4700 -7.5680 7.9895 42 1 1.2975 -4.0771 3.7637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388482863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:07 Heat of formation + Delta-G solvation = 28.992041 kcal Electronic energy + Delta-G solvation = -25576.682039 eV Core-core repulsion = 21874.727803 eV Total energy + Delta-G solvation = -3701.954236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.73720 -39.02410 -38.12602 -37.14426 -35.30980 -33.16400 -32.13373 -31.44811 -30.71969 -29.47172 -28.41594 -27.18870 -25.36456 -25.18843 -23.17971 -21.94051 -21.72097 -20.80007 -19.99414 -17.89215 -17.61139 -17.20552 -16.88787 -16.49701 -15.67503 -15.46357 -15.01086 -14.63796 -14.51418 -14.15318 -14.08581 -13.92858 -13.65398 -13.49683 -13.38225 -13.05928 -12.85033 -12.73739 -12.41445 -12.34455 -12.03438 -11.94384 -11.61066 -11.38597 -11.10135 -10.91107 -10.79396 -10.59680 -10.37407 -10.14381 -9.39364 -9.34774 -8.84521 -8.74092 -8.30988 -7.32366 -6.75365 -6.39053 -3.98077 0.67147 1.13219 1.97827 2.40662 2.43691 2.59345 3.15403 3.16660 3.21745 3.47582 3.98819 4.02676 4.14480 4.36803 4.62905 4.72377 4.75463 4.83866 4.93127 5.06535 5.17149 5.18412 5.19500 5.37381 5.40021 5.41534 5.53885 5.60556 5.72024 5.81649 6.00385 6.01140 6.06269 6.21208 6.24410 6.30282 6.38768 6.43987 6.65938 6.68146 6.95090 7.06248 7.18403 7.41317 7.51919 7.69680 8.03832 8.07634 8.23068 9.07447 9.80217 10.79443 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.003061 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.976990 B = 9143.787827 C =10142.587810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.057 3.943 3 O -0.192 6.192 4 C 0.047 3.953 5 C -0.108 4.108 6 C -0.097 4.097 7 C -0.135 4.135 8 C -0.067 4.067 9 C -0.113 4.113 10 C -0.195 4.195 11 C 0.208 3.792 12 N -0.750 5.750 13 C 0.250 3.750 14 C -0.280 4.280 15 C -0.040 4.040 16 C -0.237 4.237 17 C 0.190 3.810 18 O -0.179 6.179 19 C -0.388 4.388 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.939 3.061 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.301 4.301 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.395 0.605 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.268 0.732 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.210 16.353 -16.032 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.009 3.991 3 O -0.094 6.094 4 C 0.000 4.000 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.153 4.153 8 C -0.085 4.085 9 C -0.114 4.114 10 C -0.196 4.196 11 C 0.083 3.917 12 N -0.382 5.382 13 C 0.149 3.851 14 C -0.303 4.303 15 C -0.059 4.059 16 C -0.257 4.257 17 C 0.135 3.865 18 O -0.082 6.082 19 C -0.464 4.464 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.764 3.236 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.325 4.325 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.078 0.922 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.998 16.280 -15.927 23.552 hybrid contribution 0.526 0.823 1.000 1.399 sum 6.524 17.104 -14.927 23.620 Atomic orbital electron populations 1.20523 0.84364 1.04507 1.04518 1.22263 0.93972 0.83208 0.99701 1.83959 1.15097 1.33908 1.76447 1.19583 0.83177 0.93523 1.03681 1.19918 0.88089 0.99665 1.04934 1.20924 0.96448 0.94688 0.99427 1.20804 0.98464 0.93843 1.02174 1.20364 0.90109 1.00388 0.97678 1.19773 0.93731 0.92778 1.05086 1.20865 0.90878 0.95818 1.12075 1.19310 0.99686 0.87524 0.85135 1.44585 1.76282 1.11634 1.05707 1.17456 0.91101 0.83477 0.93083 1.20060 1.18329 0.95615 0.96323 1.20367 0.95853 0.94501 0.95133 1.20042 1.14723 1.00132 0.90822 1.19067 0.90311 0.91083 0.86005 1.83988 1.71487 1.42641 1.10084 1.21346 1.44479 0.95863 0.84755 0.89159 1.25260 0.96987 0.96881 0.97426 1.70053 1.43908 1.16659 1.19391 0.85684 0.78462 0.79344 0.80138 1.19246 1.20200 1.20186 1.20499 1.18981 0.98255 0.94783 0.89109 0.90146 0.88564 0.85176 0.84836 0.85289 0.85341 0.91658 0.91796 0.77112 0.87894 0.87221 0.86941 0.92191 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.18 36.01 0.37 -0.31 16 2 C 0.06 0.65 7.23 -35.80 -0.26 0.39 16 3 O -0.19 -2.39 10.58 3.89 0.04 -2.35 16 4 C 0.05 0.58 7.42 -38.47 -0.29 0.29 16 5 C -0.11 -1.06 10.07 -39.46 -0.40 -1.46 16 6 C -0.10 -0.83 10.01 -39.54 -0.40 -1.23 16 7 C -0.13 -1.26 9.98 -39.94 -0.40 -1.66 16 8 C -0.07 -0.76 10.05 -39.69 -0.40 -1.16 16 9 C -0.11 -1.42 6.38 -105.16 -0.67 -2.09 16 10 C -0.19 -2.37 5.72 -102.66 -0.59 -2.96 16 11 C 0.21 2.59 5.21 -5.19 -0.03 2.56 16 12 N -0.75 -11.42 5.72 -59.82 -0.34 -11.76 16 13 C 0.25 4.67 6.65 -83.81 -0.56 4.11 16 14 C -0.28 -4.94 9.31 -39.33 -0.37 -5.31 16 15 C -0.04 -0.73 10.03 -39.64 -0.40 -1.12 16 16 C -0.24 -5.16 9.99 -39.35 -0.39 -5.56 16 17 C 0.19 4.71 6.64 -39.13 -0.26 4.45 16 18 O -0.18 -5.22 9.76 0.03 0.00 -5.22 16 19 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 23 Si 0.94 20.95 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.30 -6.71 9.01 -39.20 -0.35 -7.07 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.71 7.06 -51.93 -0.37 0.34 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 35 H 0.07 0.74 6.87 -51.93 -0.36 0.39 16 36 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 37 H 0.39 6.00 8.47 -40.82 -0.35 5.65 16 38 H 0.10 1.54 6.73 -52.48 -0.35 1.19 16 39 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.12 2.79 5.64 -52.49 -0.30 2.50 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -32.75 360.34 -9.24 -41.99 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.92 Total: 8.90 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -5.18 Total: -27.92 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.42 Total: -36.76 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.04 Total: -7.56 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.75 -9.24 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388482863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.980 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds