Wall clock time and date at job start Tue Mar 31 2020 13:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34450 * 124.92040 * 2 1 4 4 C 1.34815 * 110.88863 * 180.02562 * 3 2 1 5 5 C 1.38938 * 133.49669 * 179.97438 * 4 3 2 6 6 C 1.37851 * 119.81764 * 180.02562 * 5 4 3 7 7 C 1.38745 * 120.68540 * 0.02562 * 6 5 4 8 8 C 1.36732 * 120.41558 * 0.02562 * 7 6 5 9 9 C 1.39406 * 119.72069 * 359.97438 * 8 7 6 10 10 C 1.33991 * 124.92444 * 180.02562 * 2 1 3 11 11 C 1.50697 * 126.90908 * 0.02562 * 10 2 1 12 12 N 1.46504 * 109.47105 * 269.97235 * 11 10 2 13 13 C 1.39673 * 120.00499 * 179.97438 * 12 11 10 14 14 C 1.39008 * 120.03827 * 359.72658 * 13 12 11 15 15 C 1.38142 * 120.06050 * 179.69877 * 14 13 12 16 16 C 1.38167 * 120.14397 * 0.59938 * 15 14 13 17 17 C 1.38920 * 120.07926 * 359.67683 * 16 15 14 18 18 O 1.35751 * 120.03129 * 180.02562 * 17 16 15 19 19 C 1.34835 * 116.99739 * 174.48546 * 18 17 16 20 20 H 1.07997 * 120.00145 * 5.06221 * 19 18 17 21 21 C 1.38652 * 119.99646 * 185.05534 * 19 18 17 22 22 N 1.31556 * 120.00036 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99849 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47211 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46914 * 120.00122 * 23 21 19 26 26 H 1.48495 * 109.47323 * 240.00461 * 23 21 19 27 27 C 1.38748 * 120.03954 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47149 * 269.99458 * 1 2 3 29 29 H 1.08990 * 109.47273 * 29.99910 * 1 2 3 30 30 H 1.09001 * 109.47069 * 149.99710 * 1 2 3 31 31 H 1.07996 * 120.09029 * 0.05118 * 5 4 3 32 32 H 1.07996 * 119.65713 * 180.27699 * 6 5 4 33 33 H 1.07998 * 119.78936 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.14420 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47453 * 29.96886 * 11 10 2 36 36 H 1.09000 * 109.48144 * 149.97140 * 11 10 2 37 37 H 0.96998 * 119.99618 * 359.97438 * 12 11 10 38 38 H 1.08007 * 119.96774 * 359.97438 * 14 13 12 39 39 H 1.08003 * 119.93196 * 180.28057 * 15 14 13 40 40 H 1.08003 * 119.96369 * 179.70525 * 16 15 14 41 41 H 0.97009 * 119.99814 * 180.02562 * 22 21 19 42 42 H 1.07995 * 120.07325 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1024 0.0000 4 6 3.5846 0.7755 -0.0006 5 6 4.7567 1.5215 -0.0013 6 6 5.9771 0.8805 -0.0023 7 6 6.0491 -0.5051 -0.0031 8 6 4.9075 -1.2576 -0.0035 9 6 3.6642 -0.6271 -0.0025 10 6 2.2741 -1.0986 -0.0005 11 6 1.8043 -2.5305 -0.0017 12 7 1.6521 -2.9956 1.3792 13 6 1.2235 -4.3004 1.6335 14 6 0.9356 -5.1566 0.5769 15 6 0.5176 -6.4492 0.8278 16 6 0.3725 -6.8912 2.1288 17 6 0.6531 -6.0388 3.1892 18 8 0.5107 -6.4743 4.4670 19 6 0.9077 -5.6374 5.4468 20 1 1.2405 -4.6394 5.2026 21 6 0.8887 -6.0580 6.7678 22 7 0.4837 -7.2738 7.0652 23 14 1.4394 -4.8988 8.1251 24 1 1.8453 -3.5993 7.5319 25 1 0.3185 -4.6804 9.0746 26 1 2.5915 -5.4947 8.8480 27 6 1.0787 -4.7416 2.9410 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 4.7119 2.6005 -0.0006 32 1 6.8866 1.4628 0.0017 33 1 7.0130 -0.9923 -0.0043 34 1 4.9687 -2.3359 -0.0038 35 1 0.8453 -2.5978 -0.5154 36 1 2.5364 -3.1529 -0.5161 37 1 1.8491 -2.3974 2.1169 38 1 1.0430 -4.8123 -0.4412 39 1 0.2988 -7.1140 0.0053 40 1 0.0409 -7.9009 2.3216 41 1 0.4700 -7.5680 7.9895 42 1 1.2975 -4.0771 3.7637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388482863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:06 Heat of formation + Delta-G solvation = 10.113258 kcal Electronic energy + Delta-G solvation = -25577.500684 eV Core-core repulsion = 21874.727803 eV Total energy + Delta-G solvation = -3702.772881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.57355 -40.74444 -38.88155 -38.78513 -36.62732 -34.43740 -34.01661 -32.18162 -31.54933 -30.91590 -29.95001 -28.17141 -27.22633 -26.40162 -23.97590 -23.41353 -22.67789 -22.29033 -21.05509 -19.72207 -19.08379 -18.16952 -17.91041 -17.40590 -16.98559 -16.71640 -16.32707 -16.15951 -15.81716 -15.60670 -15.36389 -15.23294 -14.84575 -14.69416 -14.45674 -14.14443 -14.02751 -13.81927 -13.60367 -13.49269 -13.16919 -13.00189 -12.98219 -12.70469 -12.49307 -12.46029 -12.18276 -12.05664 -11.86592 -11.30673 -10.99411 -10.95741 -10.61231 -9.64309 -9.12334 -9.09041 -8.45649 -8.23615 -6.13575 -0.11258 0.33673 0.78089 0.93459 1.11039 1.33152 1.42533 1.51153 1.64931 2.17685 2.61495 2.82229 2.89642 3.27782 3.36701 3.51471 3.60863 3.80832 4.00813 4.08631 4.22343 4.27103 4.36731 4.40752 4.42300 4.51549 4.59087 4.63329 4.66805 4.71367 4.77202 4.89349 5.01439 5.06636 5.14566 5.16924 5.23768 5.31954 5.41906 5.46768 5.49353 5.69533 5.76769 5.82351 6.04530 6.12528 6.13565 6.59392 6.79931 7.00073 7.83876 8.78266 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.003061 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.976990 B = 9143.787827 C =10142.587810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.059 3.941 3 O -0.203 6.203 4 C 0.020 3.980 5 C -0.113 4.113 6 C -0.092 4.092 7 C -0.133 4.133 8 C -0.090 4.090 9 C -0.135 4.135 10 C -0.213 4.213 11 C 0.210 3.790 12 N -0.740 5.740 13 C 0.259 3.741 14 C -0.262 4.262 15 C -0.024 4.024 16 C -0.261 4.261 17 C 0.153 3.847 18 O -0.232 6.232 19 C -0.409 4.409 20 H 0.097 0.903 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.016 2.984 24 H -0.256 1.256 25 H -0.266 1.266 26 H -0.267 1.267 27 C -0.316 4.316 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.151 0.849 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.394 0.606 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.272 0.728 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 18.822 -18.386 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.010 3.990 3 O -0.105 6.105 4 C -0.026 4.026 5 C -0.132 4.132 6 C -0.110 4.110 7 C -0.151 4.151 8 C -0.108 4.108 9 C -0.136 4.136 10 C -0.215 4.215 11 C 0.087 3.913 12 N -0.370 5.370 13 C 0.155 3.845 14 C -0.285 4.285 15 C -0.043 4.043 16 C -0.282 4.282 17 C 0.102 3.898 18 O -0.139 6.139 19 C -0.485 4.485 20 H 0.114 0.886 21 C -0.220 4.220 22 N -0.560 5.560 23 Si 0.836 3.164 24 H -0.179 1.179 25 H -0.191 1.191 26 H -0.192 1.192 27 C -0.340 4.340 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.168 0.832 32 H 0.186 0.814 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.210 18.797 -18.355 27.244 hybrid contribution 0.234 0.192 1.366 1.399 sum 7.444 18.989 -16.989 26.545 Atomic orbital electron populations 1.20675 0.82340 1.05947 1.04969 1.22796 0.95103 0.82823 0.98245 1.83949 1.15472 1.34456 1.76650 1.20019 0.83636 0.93955 1.05003 1.20340 0.87774 1.00845 1.04200 1.21364 0.97274 0.94665 0.97698 1.21178 0.98871 0.94416 1.00599 1.20538 0.90548 1.00655 0.99080 1.20033 0.94333 0.93328 1.05886 1.20842 0.91114 0.95768 1.13769 1.19443 1.00795 0.87851 0.83202 1.44730 1.74731 1.10192 1.07316 1.17514 0.90028 0.85026 0.91961 1.20551 1.15332 0.94806 0.97768 1.20831 0.93503 0.95396 0.94541 1.20275 1.16123 0.99932 0.91859 1.19635 0.91966 0.92822 0.85386 1.83947 1.74159 1.44001 1.11771 1.21796 1.44877 0.96356 0.85514 0.88570 1.26538 0.96835 0.98814 0.99825 1.70194 1.46488 1.19126 1.20186 0.84565 0.78300 0.77192 0.76341 1.17924 1.19136 1.19244 1.20483 1.19945 0.97368 0.96232 0.88983 0.88432 0.87434 0.83157 0.81445 0.82951 0.85493 0.89678 0.91339 0.77195 0.83831 0.82887 0.87551 0.91887 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.18 71.24 0.73 -0.45 16 2 C 0.06 1.25 7.23 24.72 0.18 1.42 16 3 O -0.20 -4.83 10.58 -9.00 -0.10 -4.92 16 4 C 0.02 0.48 7.42 22.99 0.17 0.65 16 5 C -0.11 -2.01 10.07 22.35 0.23 -1.78 16 6 C -0.09 -1.33 10.01 22.30 0.22 -1.10 16 7 C -0.13 -2.19 9.98 22.04 0.22 -1.97 16 8 C -0.09 -1.93 10.05 22.20 0.22 -1.71 16 9 C -0.13 -3.26 6.38 -20.21 -0.13 -3.39 16 10 C -0.21 -4.87 5.72 -18.60 -0.11 -4.97 16 11 C 0.21 4.67 5.21 85.63 0.45 5.12 16 12 N -0.74 -21.22 5.72 -343.18 -1.96 -23.19 16 13 C 0.26 9.27 6.65 38.20 0.25 9.52 16 14 C -0.26 -8.31 9.31 22.43 0.21 -8.10 16 15 C -0.02 -0.82 10.03 22.23 0.22 -0.60 16 16 C -0.26 -11.56 9.99 22.42 0.22 -11.34 16 17 C 0.15 7.94 6.64 22.56 0.15 8.09 16 18 O -0.23 -14.49 9.76 -22.79 -0.22 -14.71 16 19 C -0.41 -24.65 9.49 67.92 0.64 -24.01 16 20 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 21 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 22 N -0.92 -57.81 13.67 21.61 0.30 -57.51 16 23 Si 1.02 44.21 29.55 68.60 2.03 46.24 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 C -0.32 -14.43 9.01 22.52 0.20 -14.23 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.11 1.26 7.06 -2.39 -0.02 1.24 16 31 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.09 1.59 6.87 -2.39 -0.02 1.58 16 36 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 37 H 0.39 11.66 8.47 -92.71 -0.79 10.87 16 38 H 0.14 3.47 6.73 -2.91 -0.02 3.45 16 39 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 42 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 Total: -1.00 -76.95 360.34 4.87 -72.08 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.28 Total: 31.72 kcal Atomic # 6 Polarization: -54.27 SS G_CDS: 4.55 Total: -49.72 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.67 Total: -80.70 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.32 Total: -19.63 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -76.95 4.87 -72.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388482863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.194 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds