Wall clock time and date at job start Tue Mar 31 2020 14:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38251 * 119.99835 * 2 1 4 4 C 1.38215 * 120.00057 * 179.73048 * 3 2 1 5 5 C 1.38259 * 119.99761 * 0.27199 * 4 3 2 6 6 S 1.76199 * 119.99956 * 179.97438 * 5 4 3 7 7 O 1.42106 * 106.39814 * 225.22677 * 6 5 4 8 8 O 1.42094 * 106.40278 * 358.14387 * 6 5 4 9 9 N 1.65597 * 107.21843 * 111.68657 * 6 5 4 10 10 C 1.46926 * 120.62964 * 95.95741 * 9 6 5 11 11 C 1.53201 * 108.77114 * 233.58351 * 10 9 6 12 12 C 1.53039 * 109.31095 * 305.36374 * 11 10 9 13 13 C 1.53034 * 109.54029 * 61.36827 * 12 11 10 14 14 H 1.08999 * 109.50049 * 58.58124 * 13 12 11 15 15 C 1.50696 * 109.50026 * 178.65419 * 13 12 11 16 16 H 1.07996 * 120.00648 * 119.99770 * 15 13 12 17 17 C 1.37884 * 119.99472 * 299.99374 * 15 13 12 18 18 N 1.31508 * 120.00240 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99894 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47044 * 60.00268 * 19 17 15 21 21 H 1.48504 * 109.47153 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47451 * 300.00443 * 19 17 15 23 23 C 1.46928 * 120.62953 * 275.66954 * 9 6 5 24 24 C 1.38217 * 119.99892 * 359.96315 * 5 4 3 25 25 C 1.50705 * 119.99823 * 180.02562 * 24 5 4 26 26 C 1.38218 * 119.99942 * 180.19777 * 2 1 3 27 27 H 1.08991 * 109.47359 * 90.00135 * 1 2 3 28 28 H 1.09005 * 109.46527 * 210.00012 * 1 2 3 29 29 H 1.09001 * 109.46894 * 329.99696 * 1 2 3 30 30 H 1.08000 * 120.00101 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.00078 * 180.26193 * 4 3 2 32 32 H 1.09004 * 109.58754 * 353.36660 * 10 9 6 33 33 H 1.09002 * 109.58974 * 113.79774 * 10 9 6 34 34 H 1.08994 * 109.49702 * 65.31343 * 11 10 9 35 35 H 1.08998 * 109.49640 * 185.41154 * 11 10 9 36 36 H 1.09000 * 109.46097 * 181.38949 * 12 11 10 37 37 H 1.09001 * 109.46021 * 301.35441 * 12 11 10 38 38 H 0.96998 * 120.00517 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.58559 * 246.20421 * 23 9 6 40 40 H 1.08997 * 109.58649 * 6.63540 * 23 9 6 41 41 H 1.08997 * 109.46866 * 94.32906 * 25 24 5 42 42 H 1.09001 * 109.46967 * 214.32820 * 25 24 5 43 43 H 1.09003 * 109.46992 * 334.32772 * 25 24 5 44 44 H 1.07993 * 119.99854 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0056 5 6 4.2717 0.0000 0.0056 6 16 6.0337 0.0000 0.0121 7 8 6.4385 -0.9580 -0.9563 8 8 6.4351 1.3625 -0.0276 9 7 6.5185 -0.5877 1.4824 10 6 6.8648 -2.0063 1.6443 11 6 6.0439 -2.5853 2.8009 12 6 6.2674 -1.7367 4.0547 13 6 5.7930 -0.3051 3.7950 14 1 4.7377 -0.3153 3.5224 15 6 5.9829 0.5215 5.0407 16 1 6.6207 1.3927 5.0187 17 6 5.3422 0.1654 6.2085 18 7 4.5658 -0.8957 6.2355 19 14 5.5780 1.1895 7.7529 20 1 5.1181 2.5788 7.5006 21 1 4.7877 0.5999 8.8633 22 1 7.0162 1.2037 8.1226 23 6 6.6165 0.3010 2.6484 24 6 3.5806 -1.1970 0.0007 25 6 4.3342 -2.5021 0.0012 26 6 2.1981 -1.1970 -0.0041 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1327 0.0099 32 1 6.6335 -2.5460 0.7259 33 1 7.9276 -2.0999 1.8678 34 1 4.9862 -2.5740 2.5377 35 1 6.3602 -3.6103 2.9942 36 1 5.7037 -2.1610 4.8856 37 1 7.3287 -1.7281 4.3029 38 1 4.1154 -1.1465 7.0571 39 1 7.6593 0.3917 2.9520 40 1 6.2212 1.2841 2.3928 41 1 4.4446 -2.8574 1.0257 42 1 3.7831 -3.2400 -0.5819 43 1 5.3197 -2.3528 -0.4399 44 1 1.6581 -2.1322 -0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397587048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:02 Heat of formation + Delta-G solvation = -54.920556 kcal Electronic energy + Delta-G solvation = -26875.504691 eV Core-core repulsion = 23305.355683 eV Total energy + Delta-G solvation = -3570.149008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.45657 -37.81716 -37.13052 -35.60109 -33.69548 -33.29963 -32.02189 -31.15291 -30.13726 -27.51204 -26.84802 -25.11589 -23.64737 -22.32531 -21.75296 -21.16238 -19.45526 -18.48166 -17.70059 -17.01992 -16.19909 -16.06068 -15.09874 -15.01188 -14.65668 -14.40378 -14.25478 -13.90800 -13.59391 -13.36354 -13.24985 -13.07374 -12.89885 -12.76602 -12.48832 -12.30853 -12.10946 -12.05158 -11.84876 -11.67614 -11.35383 -11.26726 -11.09082 -10.97833 -10.84363 -10.76124 -10.39271 -10.17653 -9.95615 -9.81649 -9.41402 -8.97608 -8.87904 -8.65550 -8.46308 -8.17228 -6.03927 -4.11089 0.67418 0.98903 1.41374 3.21921 3.29282 3.33889 3.37311 3.59287 4.03538 4.39668 4.53305 4.71249 4.78533 4.90562 5.19729 5.23817 5.25505 5.27378 5.42860 5.43986 5.57377 5.62609 5.64081 5.71219 5.84079 5.90093 5.98468 5.99541 6.18559 6.21149 6.28084 6.31785 6.40647 6.45721 6.49755 6.59077 6.65095 6.86454 6.97066 7.00622 7.19159 7.41137 7.68054 7.91642 8.06326 8.37070 8.92236 9.53862 11.01206 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.005372 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.834031 B = 5211.314561 C = 6119.261735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.031 4.031 3 C -0.151 4.151 4 C -0.011 4.011 5 C -0.680 4.680 6 S 2.692 3.308 7 O -0.968 6.968 8 O -0.964 6.964 9 N -0.989 5.989 10 C 0.116 3.884 11 C -0.139 4.139 12 C -0.109 4.109 13 C 0.041 3.959 14 H 0.030 0.970 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.127 3.873 24 C 0.033 3.967 25 C -0.191 4.191 26 C -0.147 4.147 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -2.594 -11.965 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.031 4.031 3 C -0.170 4.170 4 C -0.031 4.031 5 C -0.767 4.767 6 S 2.784 3.216 7 O -0.958 6.958 8 O -0.954 6.954 9 N -0.828 5.828 10 C -0.009 4.009 11 C -0.178 4.178 12 C -0.147 4.147 13 C 0.021 3.979 14 H 0.048 0.952 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C 0.004 3.996 24 C 0.032 3.968 25 C -0.246 4.246 26 C -0.166 4.166 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.146 0.854 31 H 0.159 0.841 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.120 -2.419 -12.524 13.404 hybrid contribution -0.827 0.444 1.331 1.629 sum -4.947 -1.976 -11.192 12.395 Atomic orbital electron populations 1.20905 0.90892 1.03412 1.02503 1.20171 0.96186 0.93331 0.93437 1.21078 0.94144 0.97770 1.03997 1.20914 0.94651 0.96658 0.90851 1.30823 1.27433 0.98935 1.19497 1.01851 0.73800 0.73119 0.72867 1.93449 1.81548 1.61939 1.58841 1.93531 1.81103 1.34462 1.86301 1.57568 1.80674 1.17669 1.26913 1.21648 0.99845 0.79720 0.99702 1.22148 0.99450 0.98953 0.97237 1.21568 0.99943 0.97119 0.96073 1.19047 0.94898 0.92539 0.91452 0.95164 1.21074 1.28645 1.11247 0.94550 0.92455 1.24921 0.94922 0.95102 0.98752 1.69856 1.30261 1.25021 1.27537 0.86674 0.78220 0.80538 0.82649 1.20280 1.21381 1.20232 1.21917 1.01514 0.91251 0.84946 1.19464 0.94026 0.93456 0.89842 1.22120 1.03249 0.94294 1.04984 1.20983 0.93540 0.97812 1.04271 0.90733 0.91058 0.91021 0.85376 0.84141 0.89905 0.91365 0.92020 0.92456 0.88764 0.94501 0.92968 0.91718 0.90906 0.88350 0.90236 0.87295 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.03 -0.40 5.88 -104.62 -0.62 -1.02 16 3 C -0.15 -2.07 9.70 -39.58 -0.38 -2.46 16 4 C -0.01 -0.18 9.55 -39.58 -0.38 -0.56 16 5 C -0.68 -11.34 5.92 -39.58 -0.23 -11.57 16 6 S 2.69 47.22 5.12 -107.50 -0.55 46.67 16 7 O -0.97 -17.32 14.10 -57.17 -0.81 -18.12 16 8 O -0.96 -18.81 15.88 -57.17 -0.91 -19.72 16 9 N -0.99 -17.59 3.28 -113.26 -0.37 -17.96 16 10 C 0.12 1.84 5.49 -3.71 -0.02 1.82 16 11 C -0.14 -2.39 5.63 -26.61 -0.15 -2.54 16 12 C -0.11 -2.36 4.96 -26.69 -0.13 -2.49 16 13 C 0.04 0.95 2.26 -91.43 -0.21 0.74 16 14 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.52 -13.46 8.57 -34.44 -0.29 -13.75 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -24.23 11.31 55.43 0.63 -23.60 16 19 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.13 2.58 5.61 -3.48 -0.02 2.56 16 24 C 0.03 0.52 5.87 -104.62 -0.61 -0.10 16 25 C -0.19 -2.60 8.24 36.01 0.30 -2.30 16 26 C -0.15 -2.03 9.38 -39.58 -0.37 -2.40 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.14 2.06 7.34 -52.49 -0.39 1.68 16 32 H 0.08 1.16 4.79 -51.93 -0.25 0.91 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.07 5.74 -51.93 -0.30 0.77 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.47 7.29 -51.93 -0.38 1.09 16 41 H 0.10 1.32 4.68 -51.93 -0.24 1.08 16 42 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 43 H 0.11 1.58 3.11 -51.93 -0.16 1.42 16 44 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -30.31 347.21 -10.87 -41.18 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.21 Total: 3.94 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: -2.86 Total: -33.24 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.26 Total: -41.56 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.71 Total: -37.85 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 47.22 SS G_CDS: -0.55 Total: 46.67 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.31 -10.87 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397587048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.737 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds