Wall clock time and date at job start Tue Mar 31 2020 14:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38251 * 119.99835 * 2 1 4 4 C 1.38215 * 120.00057 * 179.73048 * 3 2 1 5 5 C 1.38259 * 119.99761 * 0.27199 * 4 3 2 6 6 S 1.76199 * 119.99956 * 179.97438 * 5 4 3 7 7 O 1.42106 * 106.39814 * 225.22677 * 6 5 4 8 8 O 1.42094 * 106.40278 * 358.14387 * 6 5 4 9 9 N 1.65597 * 107.21843 * 111.68657 * 6 5 4 10 10 C 1.46926 * 120.62964 * 95.95741 * 9 6 5 11 11 C 1.53201 * 108.77114 * 233.58351 * 10 9 6 12 12 C 1.53039 * 109.31095 * 305.36374 * 11 10 9 13 13 C 1.53034 * 109.54029 * 61.36827 * 12 11 10 14 14 H 1.08999 * 109.50049 * 58.58124 * 13 12 11 15 15 C 1.50696 * 109.50026 * 178.65419 * 13 12 11 16 16 H 1.07996 * 120.00648 * 119.99770 * 15 13 12 17 17 C 1.37884 * 119.99472 * 299.99374 * 15 13 12 18 18 N 1.31508 * 120.00240 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99894 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47044 * 60.00268 * 19 17 15 21 21 H 1.48504 * 109.47153 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47451 * 300.00443 * 19 17 15 23 23 C 1.46928 * 120.62953 * 275.66954 * 9 6 5 24 24 C 1.38217 * 119.99892 * 359.96315 * 5 4 3 25 25 C 1.50705 * 119.99823 * 180.02562 * 24 5 4 26 26 C 1.38218 * 119.99942 * 180.19777 * 2 1 3 27 27 H 1.08991 * 109.47359 * 90.00135 * 1 2 3 28 28 H 1.09005 * 109.46527 * 210.00012 * 1 2 3 29 29 H 1.09001 * 109.46894 * 329.99696 * 1 2 3 30 30 H 1.08000 * 120.00101 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.00078 * 180.26193 * 4 3 2 32 32 H 1.09004 * 109.58754 * 353.36660 * 10 9 6 33 33 H 1.09002 * 109.58974 * 113.79774 * 10 9 6 34 34 H 1.08994 * 109.49702 * 65.31343 * 11 10 9 35 35 H 1.08998 * 109.49640 * 185.41154 * 11 10 9 36 36 H 1.09000 * 109.46097 * 181.38949 * 12 11 10 37 37 H 1.09001 * 109.46021 * 301.35441 * 12 11 10 38 38 H 0.96998 * 120.00517 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.58559 * 246.20421 * 23 9 6 40 40 H 1.08997 * 109.58649 * 6.63540 * 23 9 6 41 41 H 1.08997 * 109.46866 * 94.32906 * 25 24 5 42 42 H 1.09001 * 109.46967 * 214.32820 * 25 24 5 43 43 H 1.09003 * 109.46992 * 334.32772 * 25 24 5 44 44 H 1.07993 * 119.99854 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0056 5 6 4.2717 0.0000 0.0056 6 16 6.0337 0.0000 0.0121 7 8 6.4385 -0.9580 -0.9563 8 8 6.4351 1.3625 -0.0276 9 7 6.5185 -0.5877 1.4824 10 6 6.8648 -2.0063 1.6443 11 6 6.0439 -2.5853 2.8009 12 6 6.2674 -1.7367 4.0547 13 6 5.7930 -0.3051 3.7950 14 1 4.7377 -0.3153 3.5224 15 6 5.9829 0.5215 5.0407 16 1 6.6207 1.3927 5.0187 17 6 5.3422 0.1654 6.2085 18 7 4.5658 -0.8957 6.2355 19 14 5.5780 1.1895 7.7529 20 1 5.1181 2.5788 7.5006 21 1 4.7877 0.5999 8.8633 22 1 7.0162 1.2037 8.1226 23 6 6.6165 0.3010 2.6484 24 6 3.5806 -1.1970 0.0007 25 6 4.3342 -2.5021 0.0012 26 6 2.1981 -1.1970 -0.0041 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1327 0.0099 32 1 6.6335 -2.5460 0.7259 33 1 7.9276 -2.0999 1.8678 34 1 4.9862 -2.5740 2.5377 35 1 6.3602 -3.6103 2.9942 36 1 5.7037 -2.1610 4.8856 37 1 7.3287 -1.7281 4.3029 38 1 4.1154 -1.1465 7.0571 39 1 7.6593 0.3917 2.9520 40 1 6.2212 1.2841 2.3928 41 1 4.4446 -2.8574 1.0257 42 1 3.7831 -3.2400 -0.5819 43 1 5.3197 -2.3528 -0.4399 44 1 1.6581 -2.1322 -0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397587048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:01 Heat of formation + Delta-G solvation = -72.341070 kcal Electronic energy + Delta-G solvation = -26876.260101 eV Core-core repulsion = 23305.355683 eV Total energy + Delta-G solvation = -3570.904418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53129 -39.35376 -38.56004 -37.04011 -35.24651 -34.62766 -33.11458 -32.72410 -31.85776 -28.44232 -27.93780 -26.97364 -25.19467 -23.44050 -23.34534 -22.28248 -21.02371 -19.87614 -19.11750 -18.37978 -18.08736 -17.35782 -16.60690 -16.25857 -16.12956 -15.61712 -15.43417 -15.21062 -15.06150 -14.79574 -14.56466 -14.35904 -14.23263 -14.07063 -13.83302 -13.58790 -13.35568 -13.18571 -13.09657 -12.89993 -12.85962 -12.74380 -12.64359 -12.56384 -12.50913 -12.11656 -11.87651 -11.76188 -11.52458 -11.45480 -11.02978 -10.74877 -10.39105 -10.06990 -9.77563 -9.73446 -8.05517 -6.19151 -0.65759 -0.17128 0.31239 1.44308 1.44545 1.51732 1.88127 2.42635 2.46588 2.71349 3.21498 3.24798 3.66637 3.81264 3.81661 3.83911 4.22892 4.24112 4.29737 4.33995 4.48042 4.53961 4.60370 4.62229 4.69148 4.73966 4.79373 4.82187 4.88319 4.94255 4.95639 5.06994 5.09788 5.16124 5.21678 5.31667 5.36102 5.42467 5.47339 5.56469 5.68575 5.75478 5.92470 6.02459 6.19612 6.42144 6.91370 7.48265 8.97536 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.005372 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.834031 B = 5211.314561 C = 6119.261735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.032 4.032 3 C -0.159 4.159 4 C -0.035 4.035 5 C -0.701 4.701 6 S 2.702 3.298 7 O -0.972 6.972 8 O -0.990 6.990 9 N -0.990 5.990 10 C 0.111 3.889 11 C -0.131 4.131 12 C -0.104 4.104 13 C 0.042 3.958 14 H -0.001 1.001 15 C -0.536 4.536 16 H 0.054 0.946 17 C 0.020 3.980 18 N -0.911 5.911 19 Si 0.947 3.053 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.138 3.862 24 C 0.017 3.983 25 C -0.192 4.192 26 C -0.157 4.157 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.260 0.740 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 -3.379 -12.590 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.032 4.032 3 C -0.178 4.178 4 C -0.054 4.054 5 C -0.790 4.790 6 S 2.797 3.203 7 O -0.962 6.962 8 O -0.981 6.981 9 N -0.829 5.829 10 C -0.013 4.013 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.022 3.978 14 H 0.017 0.983 15 C -0.575 4.575 16 H 0.072 0.928 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.774 3.226 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.197 1.197 23 C 0.013 3.987 24 C 0.016 3.984 25 C -0.247 4.247 26 C -0.175 4.175 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.057 -3.209 -13.158 14.457 hybrid contribution -0.619 0.691 1.495 1.759 sum -5.676 -2.518 -11.664 13.213 Atomic orbital electron populations 1.20992 0.88061 1.04364 1.04071 1.20675 0.98296 0.92765 0.91464 1.21447 0.93503 0.99464 1.03352 1.21119 0.95921 0.96477 0.91922 1.30628 1.26414 1.00105 1.21866 1.01348 0.74141 0.72331 0.72493 1.93439 1.82171 1.61840 1.58797 1.93488 1.82062 1.35915 1.86619 1.57506 1.81140 1.18217 1.26032 1.21859 1.00492 0.78690 1.00233 1.22054 0.99828 0.99612 0.95415 1.21383 0.98903 0.96618 0.97281 1.18952 0.93572 0.93693 0.91604 0.98295 1.21464 1.28538 1.11570 0.95928 0.92759 1.25600 0.94841 0.96100 1.01372 1.69988 1.30890 1.26103 1.28004 0.85780 0.78287 0.79099 0.79464 1.20072 1.21119 1.19652 1.21604 1.00969 0.91251 0.84897 1.19797 0.95111 0.93590 0.89925 1.22148 1.02984 0.94217 1.05352 1.21391 0.93125 0.99382 1.03636 0.88652 0.90077 0.90144 0.82889 0.84344 0.87565 0.89904 0.92233 0.89659 0.91911 0.94801 0.93125 0.91304 0.91556 0.88303 0.87551 0.88222 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 10.01 71.24 0.71 -1.16 16 2 C -0.03 -0.76 5.88 -19.86 -0.12 -0.88 16 3 C -0.16 -4.20 9.70 22.27 0.22 -3.98 16 4 C -0.03 -1.11 9.55 22.27 0.21 -0.90 16 5 C -0.70 -23.38 5.92 22.27 0.13 -23.25 16 6 S 2.70 95.09 5.12 -56.49 -0.29 94.80 16 7 O -0.97 -34.15 14.10 -128.00 -1.81 -35.96 16 8 O -0.99 -39.52 15.88 -128.00 -2.03 -41.55 16 9 N -0.99 -35.06 3.28 -512.25 -1.68 -36.74 16 10 C 0.11 3.38 5.49 86.37 0.47 3.85 16 11 C -0.13 -4.33 5.63 30.67 0.17 -4.16 16 12 C -0.10 -4.53 4.96 30.62 0.15 -4.37 16 13 C 0.04 1.99 2.26 -11.32 -0.03 1.97 16 14 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 15 C -0.54 -28.51 8.57 25.60 0.22 -28.29 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 17 C 0.02 1.08 5.30 84.66 0.45 1.53 16 18 N -0.91 -50.53 11.31 21.45 0.24 -50.29 16 19 Si 0.95 42.61 29.54 68.60 2.03 44.63 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C 0.14 5.66 5.61 86.51 0.49 6.14 16 24 C 0.02 0.51 5.87 -19.87 -0.12 0.40 16 25 C -0.19 -4.88 8.24 71.24 0.59 -4.29 16 26 C -0.16 -4.02 9.38 22.27 0.21 -3.81 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.15 8.09 -2.38 -0.02 1.13 16 29 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 30 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.14 4.24 7.34 -2.91 -0.02 4.22 16 32 H 0.11 2.76 4.79 -2.39 -0.01 2.75 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 2.01 5.74 -2.39 -0.01 2.00 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 3.15 6.04 -2.39 -0.01 3.14 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 39 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.07 2.77 7.29 -2.39 -0.02 2.75 16 41 H 0.10 2.49 4.68 -2.39 -0.01 2.48 16 42 H 0.11 2.07 8.11 -2.39 -0.02 2.05 16 43 H 0.10 2.73 3.11 -2.39 -0.01 2.72 16 44 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -66.04 347.21 1.23 -64.81 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.01 Total: 21.50 kcal Atomic # 6 Polarization: -64.97 SS G_CDS: 3.76 Total: -61.21 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.44 Total: -87.03 kcal Atomic # 8 Polarization: -73.67 SS G_CDS: -3.84 Total: -77.51 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 95.09 SS G_CDS: -0.29 Total: 94.80 kcal Total: -66.04 1.23 -64.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397587048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.534 kcal (2) G-P(sol) polarization free energy of solvation -66.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds