Wall clock time and date at job start Tue Mar 31 2020 14:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99819 * 2 1 4 4 C 1.38210 * 119.99704 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00023 * 0.25590 * 4 3 2 6 6 S 1.76204 * 120.00032 * 179.72167 * 5 4 3 7 7 O 1.42102 * 106.40065 * 357.13379 * 6 5 4 8 8 O 1.42095 * 106.40328 * 130.05417 * 6 5 4 9 9 N 1.65606 * 107.21678 * 243.59431 * 6 5 4 10 10 C 1.46924 * 120.63124 * 83.73545 * 9 6 5 11 11 C 1.53197 * 108.77478 * 126.36612 * 10 9 6 12 12 C 1.53037 * 109.31007 * 54.63391 * 11 10 9 13 13 C 1.53037 * 109.53973 * 298.63493 * 12 11 10 14 14 H 1.08997 * 109.49569 * 301.37842 * 13 12 11 15 15 C 1.50698 * 109.49591 * 181.32109 * 13 12 11 16 16 H 1.08006 * 120.00029 * 239.99485 * 15 13 12 17 17 C 1.37882 * 120.00590 * 59.99853 * 15 13 12 18 18 N 1.31509 * 119.99471 * 359.97438 * 17 15 13 19 19 Si 1.86792 * 120.00154 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47262 * 90.00016 * 19 17 15 21 21 H 1.48495 * 109.47266 * 209.99754 * 19 17 15 22 22 H 1.48503 * 109.47292 * 329.99799 * 19 17 15 23 23 C 1.46921 * 120.62699 * 263.45258 * 9 6 5 24 24 C 1.38215 * 120.00148 * 359.48703 * 5 4 3 25 25 C 1.50701 * 120.00095 * 180.25606 * 24 5 4 26 26 C 1.38212 * 120.00007 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47276 * 90.00083 * 1 2 3 28 28 H 1.09000 * 109.47331 * 210.00271 * 1 2 3 29 29 H 1.09006 * 109.47328 * 330.00178 * 1 2 3 30 30 H 1.07994 * 120.00357 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.99935 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.58505 * 246.15364 * 10 9 6 33 33 H 1.09003 * 109.58585 * 6.58240 * 10 9 6 34 34 H 1.08997 * 109.49562 * 174.58263 * 11 10 9 35 35 H 1.08994 * 109.49886 * 294.67972 * 11 10 9 36 36 H 1.09002 * 109.45744 * 58.65963 * 12 11 10 37 37 H 1.09005 * 109.45945 * 178.62498 * 12 11 10 38 38 H 0.97000 * 120.00097 * 180.02562 * 18 17 15 39 39 H 1.09005 * 109.59111 * 353.41983 * 23 9 6 40 40 H 1.08999 * 109.58775 * 113.84733 * 23 9 6 41 41 H 1.08999 * 109.46797 * 276.20007 * 25 24 5 42 42 H 1.09000 * 109.47210 * 36.19714 * 25 24 5 43 43 H 1.08994 * 109.46793 * 156.20141 * 25 24 5 44 44 H 1.08000 * 119.99943 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2716 0.0000 -0.0043 6 16 6.0336 0.0000 -0.0110 7 8 6.4346 1.3616 -0.0782 8 8 6.4389 -0.8791 1.0292 9 7 6.5184 -0.7009 -1.4310 10 6 6.6035 0.0907 -2.6658 11 6 8.0050 -0.0746 -3.2618 12 6 8.3033 -1.5640 -3.4482 13 6 8.2705 -2.2665 -2.0890 14 1 9.0046 -1.8095 -1.4255 15 6 8.5963 -3.7268 -2.2697 16 1 7.8798 -4.4801 -1.9770 17 6 9.8089 -4.1012 -2.8086 18 7 10.6811 -3.1839 -3.1654 19 14 10.2128 -5.9112 -3.0318 20 1 9.7601 -6.3576 -4.3738 21 1 11.6797 -6.1094 -2.9131 22 1 9.5198 -6.7057 -1.9860 23 6 6.8774 -2.1248 -1.4785 24 6 3.5806 -1.1970 0.0011 25 6 4.3341 -2.5021 0.0017 26 6 2.1981 -1.1969 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1326 0.0001 32 1 5.8591 -0.2634 -3.3788 33 1 6.4245 1.1417 -2.4390 34 1 8.0515 0.4294 -4.2272 35 1 8.7412 0.3623 -2.5870 36 1 7.5524 -2.0054 -4.1035 37 1 9.2904 -1.6835 -3.8949 38 1 11.5341 -3.4472 -3.5448 39 1 6.8791 -2.5352 -0.4686 40 1 6.1558 -2.6633 -2.0928 41 1 4.6083 -2.7637 -1.0203 42 1 5.2361 -2.4006 0.6052 43 1 3.7029 -3.2858 0.4205 44 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397587049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:05 Heat of formation + Delta-G solvation = -59.816749 kcal Electronic energy + Delta-G solvation = -26374.333182 eV Core-core repulsion = 22803.971860 eV Total energy + Delta-G solvation = -3570.361323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.63058 -37.77725 -37.08201 -35.54963 -33.85505 -33.29640 -32.22312 -31.08174 -30.14056 -27.66472 -27.00895 -25.09984 -23.65622 -22.48918 -21.70232 -21.24704 -19.54205 -18.49336 -17.50267 -17.15657 -16.23512 -15.99347 -15.21495 -15.18799 -14.64394 -14.44966 -14.30300 -13.93960 -13.58881 -13.47989 -13.31530 -13.15101 -12.91572 -12.70157 -12.59777 -12.38982 -12.21057 -11.98084 -11.91664 -11.75376 -11.48607 -11.29918 -11.20223 -10.97026 -10.82114 -10.71290 -10.46044 -10.20500 -9.93137 -9.79101 -9.36609 -9.18626 -8.87462 -8.83471 -8.44214 -8.16421 -6.00693 -4.08332 0.58408 0.84026 1.20557 3.15980 3.29721 3.37217 3.39908 3.47786 4.02939 4.41010 4.44816 4.54304 4.67040 4.74591 5.06349 5.09076 5.23200 5.25014 5.29831 5.31818 5.43502 5.54992 5.63974 5.71096 5.72291 5.80005 5.82491 5.99868 6.03770 6.17273 6.23101 6.26222 6.30428 6.34422 6.48355 6.64001 6.65267 6.77612 6.89555 7.03320 7.23221 7.44899 7.71106 7.95753 8.10070 8.38905 8.94995 9.56447 11.04724 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.003949 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.153918 B = 7088.331821 C = 7712.119152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.034 4.034 3 C -0.154 4.154 4 C -0.016 4.016 5 C -0.685 4.685 6 S 2.689 3.311 7 O -0.967 6.967 8 O -0.955 6.955 9 N -0.989 5.989 10 C 0.126 3.874 11 C -0.131 4.131 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.032 0.968 15 C -0.515 4.515 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.892 3.108 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.120 3.880 24 C 0.033 3.967 25 C -0.183 4.183 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.095 0.905 38 H 0.261 0.739 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.917 6.993 3.094 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.034 4.034 3 C -0.173 4.173 4 C -0.036 4.036 5 C -0.771 4.771 6 S 2.780 3.220 7 O -0.957 6.957 8 O -0.945 6.945 9 N -0.829 5.829 10 C 0.000 4.000 11 C -0.170 4.170 12 C -0.148 4.148 13 C 0.020 3.980 14 H 0.050 0.950 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.720 3.280 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.003 4.003 24 C 0.032 3.968 25 C -0.239 4.239 26 C -0.167 4.167 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.159 0.841 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.099 0.901 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.236 7.335 3.693 19.093 hybrid contribution -0.561 -1.044 -0.506 1.289 sum -17.797 6.292 3.187 19.144 Atomic orbital electron populations 1.20908 0.90827 1.03187 1.02808 1.20192 0.96208 0.93329 0.93711 1.21090 0.94140 0.97747 1.04328 1.20938 0.94579 0.96697 0.91338 1.31074 1.28097 0.98803 1.19081 1.02037 0.73538 0.73134 0.73315 1.93515 1.80986 1.34681 1.86551 1.93523 1.80923 1.65868 1.54186 1.57554 1.80164 1.20700 1.24433 1.21417 0.99131 0.93962 0.85469 1.21954 0.95068 1.00624 0.99381 1.21593 1.03113 0.90231 0.99881 1.18890 0.89899 0.96008 0.93186 0.95007 1.21074 1.01417 0.91257 1.41657 0.92398 1.24939 0.96184 0.97336 0.95356 1.69874 1.07818 1.32394 1.42468 0.86592 0.77511 0.85442 0.78416 1.20777 1.21290 1.19851 1.22001 0.99853 0.76599 1.01896 1.19594 0.94010 0.93724 0.89504 1.21931 1.02872 0.93734 1.05328 1.21055 0.93544 0.97873 1.04247 0.90522 0.91106 0.91131 0.85388 0.84130 0.92129 0.90632 0.92517 0.92146 0.94620 0.88681 0.92950 0.89738 0.92326 0.88501 0.87262 0.90083 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.03 -0.36 5.88 -104.62 -0.62 -0.97 16 3 C -0.15 -1.70 9.70 -39.58 -0.38 -2.08 16 4 C -0.02 -0.21 9.55 -39.58 -0.38 -0.59 16 5 C -0.69 -10.19 5.90 -39.58 -0.23 -10.43 16 6 S 2.69 47.03 5.10 -107.50 -0.55 46.49 16 7 O -0.97 -18.26 15.75 -57.17 -0.90 -19.16 16 8 O -0.95 -18.90 14.13 -57.17 -0.81 -19.70 16 9 N -0.99 -17.53 3.23 -113.77 -0.37 -17.90 16 10 C 0.13 2.05 6.46 -3.71 -0.02 2.03 16 11 C -0.13 -2.43 6.08 -26.61 -0.16 -2.59 16 12 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 13 C 0.04 0.96 2.24 -91.88 -0.21 0.76 16 14 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.52 -13.45 8.56 -34.44 -0.29 -13.75 16 16 H 0.06 1.46 7.75 -52.48 -0.41 1.05 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.63 11.31 55.43 0.63 -24.01 16 19 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 C 0.12 2.35 3.74 -3.94 -0.01 2.34 16 24 C 0.03 0.45 5.87 -104.62 -0.61 -0.16 16 25 C -0.18 -2.46 8.15 36.01 0.29 -2.17 16 26 C -0.15 -1.73 9.33 -39.59 -0.37 -2.10 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.14 1.70 7.34 -52.49 -0.39 1.32 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.12 7.08 -51.93 -0.37 0.75 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 39 H 0.08 1.66 5.52 -51.93 -0.29 1.37 16 40 H 0.06 1.06 6.92 -51.93 -0.36 0.70 16 41 H 0.10 1.27 5.86 -51.93 -0.30 0.97 16 42 H 0.11 1.70 4.10 -51.93 -0.21 1.48 16 43 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 44 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -30.96 350.21 -11.02 -41.98 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.41 Total: 2.55 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -2.87 Total: -31.17 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.26 Total: -41.90 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.71 Total: -38.87 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 47.03 SS G_CDS: -0.55 Total: 46.49 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.96 -11.02 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397587049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.842 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds