Wall clock time and date at job start Tue Mar 31 2020 14:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99819 * 2 1 4 4 C 1.38210 * 119.99704 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00023 * 0.25590 * 4 3 2 6 6 S 1.76204 * 120.00032 * 179.72167 * 5 4 3 7 7 O 1.42102 * 106.40065 * 357.13379 * 6 5 4 8 8 O 1.42095 * 106.40328 * 130.05417 * 6 5 4 9 9 N 1.65606 * 107.21678 * 243.59431 * 6 5 4 10 10 C 1.46924 * 120.63124 * 83.73545 * 9 6 5 11 11 C 1.53197 * 108.77478 * 126.36612 * 10 9 6 12 12 C 1.53037 * 109.31007 * 54.63391 * 11 10 9 13 13 C 1.53037 * 109.53973 * 298.63493 * 12 11 10 14 14 H 1.08997 * 109.49569 * 301.37842 * 13 12 11 15 15 C 1.50698 * 109.49591 * 181.32109 * 13 12 11 16 16 H 1.08006 * 120.00029 * 239.99485 * 15 13 12 17 17 C 1.37882 * 120.00590 * 59.99853 * 15 13 12 18 18 N 1.31509 * 119.99471 * 359.97438 * 17 15 13 19 19 Si 1.86792 * 120.00154 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47262 * 90.00016 * 19 17 15 21 21 H 1.48495 * 109.47266 * 209.99754 * 19 17 15 22 22 H 1.48503 * 109.47292 * 329.99799 * 19 17 15 23 23 C 1.46921 * 120.62699 * 263.45258 * 9 6 5 24 24 C 1.38215 * 120.00148 * 359.48703 * 5 4 3 25 25 C 1.50701 * 120.00095 * 180.25606 * 24 5 4 26 26 C 1.38212 * 120.00007 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47276 * 90.00083 * 1 2 3 28 28 H 1.09000 * 109.47331 * 210.00271 * 1 2 3 29 29 H 1.09006 * 109.47328 * 330.00178 * 1 2 3 30 30 H 1.07994 * 120.00357 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.99935 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.58505 * 246.15364 * 10 9 6 33 33 H 1.09003 * 109.58585 * 6.58240 * 10 9 6 34 34 H 1.08997 * 109.49562 * 174.58263 * 11 10 9 35 35 H 1.08994 * 109.49886 * 294.67972 * 11 10 9 36 36 H 1.09002 * 109.45744 * 58.65963 * 12 11 10 37 37 H 1.09005 * 109.45945 * 178.62498 * 12 11 10 38 38 H 0.97000 * 120.00097 * 180.02562 * 18 17 15 39 39 H 1.09005 * 109.59111 * 353.41983 * 23 9 6 40 40 H 1.08999 * 109.58775 * 113.84733 * 23 9 6 41 41 H 1.08999 * 109.46797 * 276.20007 * 25 24 5 42 42 H 1.09000 * 109.47210 * 36.19714 * 25 24 5 43 43 H 1.08994 * 109.46793 * 156.20141 * 25 24 5 44 44 H 1.08000 * 119.99943 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2716 0.0000 -0.0043 6 16 6.0336 0.0000 -0.0110 7 8 6.4346 1.3616 -0.0782 8 8 6.4389 -0.8791 1.0292 9 7 6.5184 -0.7009 -1.4310 10 6 6.6035 0.0907 -2.6658 11 6 8.0050 -0.0746 -3.2618 12 6 8.3033 -1.5640 -3.4482 13 6 8.2705 -2.2665 -2.0890 14 1 9.0046 -1.8095 -1.4255 15 6 8.5963 -3.7268 -2.2697 16 1 7.8798 -4.4801 -1.9770 17 6 9.8089 -4.1012 -2.8086 18 7 10.6811 -3.1839 -3.1654 19 14 10.2128 -5.9112 -3.0318 20 1 9.7601 -6.3576 -4.3738 21 1 11.6797 -6.1094 -2.9131 22 1 9.5198 -6.7057 -1.9860 23 6 6.8774 -2.1248 -1.4785 24 6 3.5806 -1.1970 0.0011 25 6 4.3341 -2.5021 0.0017 26 6 2.1981 -1.1969 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1326 0.0001 32 1 5.8591 -0.2634 -3.3788 33 1 6.4245 1.1417 -2.4390 34 1 8.0515 0.4294 -4.2272 35 1 8.7412 0.3623 -2.5870 36 1 7.5524 -2.0054 -4.1035 37 1 9.2904 -1.6835 -3.8949 38 1 11.5341 -3.4472 -3.5448 39 1 6.8791 -2.5352 -0.4686 40 1 6.1558 -2.6633 -2.0928 41 1 4.6083 -2.7637 -1.0203 42 1 5.2361 -2.4006 0.6052 43 1 3.7029 -3.2858 0.4205 44 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397587049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:05 Heat of formation + Delta-G solvation = -78.281053 kcal Electronic energy + Delta-G solvation = -26375.133855 eV Core-core repulsion = 22803.971860 eV Total energy + Delta-G solvation = -3571.161995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53813 -39.36075 -38.51590 -37.00063 -35.23144 -34.67262 -33.17677 -32.65503 -31.89542 -28.42948 -27.97853 -26.98141 -25.19909 -23.43964 -23.33013 -22.21039 -21.18456 -19.78450 -18.98345 -18.46860 -18.04030 -17.27372 -16.63715 -16.30312 -16.07227 -15.45535 -15.37797 -15.27875 -15.16204 -14.84319 -14.47836 -14.36973 -14.22040 -14.02213 -13.87916 -13.53437 -13.30184 -13.16758 -13.07984 -12.94636 -12.85251 -12.78319 -12.65945 -12.55491 -12.49062 -12.10873 -11.86402 -11.75040 -11.63046 -11.50659 -11.03724 -10.74239 -10.39286 -10.08884 -9.85057 -9.69998 -8.04439 -6.19365 -0.68158 -0.20552 0.29738 1.44966 1.46621 1.56141 1.90881 2.46181 2.47146 2.73454 3.22715 3.27324 3.64958 3.80689 3.82208 3.85203 4.24688 4.26844 4.27960 4.36242 4.47428 4.54170 4.58967 4.64020 4.66776 4.70218 4.81521 4.82698 4.88490 4.92927 5.00469 5.08620 5.10129 5.15272 5.26458 5.29975 5.32592 5.37707 5.47845 5.56114 5.67717 5.74229 5.90571 6.00534 6.19832 6.40227 6.92706 7.48732 8.99659 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.003949 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.153918 B = 7088.331821 C = 7712.119152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.027 4.027 3 C -0.152 4.152 4 C -0.031 4.031 5 C -0.694 4.694 6 S 2.693 3.307 7 O -0.989 6.989 8 O -0.989 6.989 9 N -0.993 5.993 10 C 0.124 3.876 11 C -0.128 4.128 12 C -0.103 4.103 13 C 0.033 3.967 14 H -0.014 1.014 15 C -0.531 4.531 16 H 0.063 0.937 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.955 3.045 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.134 3.866 24 C 0.018 3.982 25 C -0.185 4.185 26 C -0.152 4.152 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.144 0.856 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.259 0.741 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.821 6.952 2.595 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.028 4.028 3 C -0.171 4.171 4 C -0.050 4.050 5 C -0.785 4.785 6 S 2.790 3.210 7 O -0.980 6.980 8 O -0.979 6.979 9 N -0.832 5.832 10 C 0.000 4.000 11 C -0.167 4.167 12 C -0.141 4.141 13 C 0.013 3.987 14 H 0.004 0.996 15 C -0.570 4.570 16 H 0.082 0.918 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.191 1.191 23 C 0.010 3.990 24 C 0.016 3.984 25 C -0.241 4.241 26 C -0.171 4.171 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.095 7.300 3.190 22.549 hybrid contribution 0.545 -0.974 -0.305 1.157 sum -20.551 6.325 2.885 21.695 Atomic orbital electron populations 1.21008 0.87908 1.04617 1.04057 1.20681 0.98280 0.92593 0.91208 1.21480 0.93187 0.99528 1.02895 1.21142 0.95905 0.96125 0.91856 1.30453 1.25225 1.00373 1.22399 1.01470 0.74766 0.72164 0.72616 1.93473 1.82337 1.35488 1.86673 1.93481 1.82478 1.66512 1.55430 1.57459 1.80982 1.19820 1.24970 1.21567 0.98087 0.95025 0.85365 1.21894 0.96186 0.97954 1.00648 1.21393 1.01354 0.92797 0.98576 1.18875 0.91326 0.94942 0.93551 0.99609 1.21493 1.01698 0.92625 1.41140 0.91842 1.25737 0.96240 1.01351 0.95296 1.70038 1.08070 1.34240 1.43325 0.85599 0.76932 0.80651 0.78713 1.19860 1.21596 1.19094 1.21680 0.97709 0.78127 1.01510 1.19720 0.95215 0.93071 0.90374 1.21909 1.02396 0.94806 1.05008 1.21390 0.92578 0.99665 1.03449 0.89110 0.89917 0.89598 0.82263 0.83830 0.89324 0.88861 0.89709 0.94342 0.93884 0.92165 0.93172 0.90373 0.90296 0.88500 0.89829 0.87688 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.01 71.24 0.71 -0.37 16 2 C -0.03 -0.46 5.88 -19.87 -0.12 -0.58 16 3 C -0.15 -2.81 9.70 22.27 0.22 -2.59 16 4 C -0.03 -0.75 9.55 22.27 0.21 -0.54 16 5 C -0.69 -20.02 5.90 22.27 0.13 -19.89 16 6 S 2.69 96.28 5.10 -56.49 -0.29 96.00 16 7 O -0.99 -38.12 15.75 -128.00 -2.02 -40.14 16 8 O -0.99 -41.02 14.13 -128.00 -1.81 -42.83 16 9 N -0.99 -35.56 3.23 -513.85 -1.66 -37.22 16 10 C 0.12 3.94 6.46 86.36 0.56 4.50 16 11 C -0.13 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -4.71 4.96 30.62 0.15 -4.56 16 13 C 0.03 1.65 2.24 -11.61 -0.03 1.63 16 14 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 15 C -0.53 -28.45 8.56 25.60 0.22 -28.23 16 16 H 0.06 3.24 7.75 -2.91 -0.02 3.21 16 17 C 0.01 0.68 5.30 84.66 0.45 1.13 16 18 N -0.92 -52.96 11.31 21.45 0.24 -52.72 16 19 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 C 0.13 5.37 3.74 86.22 0.32 5.69 16 24 C 0.02 0.46 5.87 -19.87 -0.12 0.34 16 25 C -0.19 -4.83 8.15 71.24 0.58 -4.25 16 26 C -0.15 -3.03 9.33 22.27 0.21 -2.82 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.09 0.56 8.09 -2.38 -0.02 0.54 16 30 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 31 H 0.14 3.31 7.34 -2.91 -0.02 3.29 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 2.65 7.08 -2.39 -0.02 2.63 16 34 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 3.18 6.04 -2.38 -0.01 3.16 16 38 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.08 3.21 5.52 -2.38 -0.01 3.20 16 40 H 0.08 2.82 6.92 -2.39 -0.02 2.81 16 41 H 0.10 2.45 5.86 -2.39 -0.01 2.44 16 42 H 0.08 2.66 4.10 -2.39 -0.01 2.65 16 43 H 0.10 2.12 8.04 -2.39 -0.02 2.10 16 44 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -70.25 350.21 1.18 -69.07 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 1.00 Total: 17.92 kcal Atomic # 6 Polarization: -58.81 SS G_CDS: 3.69 Total: -55.13 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -1.42 Total: -89.94 kcal Atomic # 8 Polarization: -79.14 SS G_CDS: -3.82 Total: -82.96 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 96.28 SS G_CDS: -0.29 Total: 96.00 kcal Total: -70.25 1.18 -69.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397587049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.214 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds