Wall clock time and date at job start Tue Mar 31 2020 14:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38253 * 120.00432 * 2 1 4 4 C 1.38218 * 120.00359 * 179.83386 * 3 2 1 5 5 C 1.38250 * 119.99570 * 0.39623 * 4 3 2 6 6 C 1.50708 * 119.99876 * 179.81260 * 5 4 3 7 7 C 1.38213 * 120.00290 * 359.53932 * 5 4 3 8 8 S 1.76202 * 120.00055 * 180.25494 * 7 5 4 9 9 O 1.42097 * 106.40267 * 44.33766 * 8 7 5 10 10 O 1.42101 * 106.40194 * 177.26346 * 8 7 5 11 11 N 1.65604 * 107.21780 * 290.79843 * 8 7 5 12 12 C 1.46924 * 120.63184 * 274.10176 * 11 8 7 13 13 C 1.53620 * 108.54606 * 126.36449 * 12 11 8 14 14 C 1.53044 * 109.24156 * 54.85658 * 13 12 11 15 15 C 1.53038 * 109.53681 * 298.51146 * 14 13 12 16 16 H 1.09007 * 109.49710 * 301.41004 * 15 14 13 17 17 C 1.50702 * 109.50114 * 181.32016 * 15 14 13 18 18 H 1.07999 * 119.99719 * 240.16574 * 17 15 14 19 19 C 1.37876 * 120.00026 * 60.15708 * 17 15 14 20 20 N 1.31513 * 120.00210 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99861 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47375 * 60.00016 * 21 19 17 23 23 H 1.48504 * 109.46903 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47148 * 299.99848 * 21 19 17 25 25 C 1.46923 * 120.62850 * 94.37230 * 11 8 7 26 26 C 1.38216 * 119.99879 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47036 * 270.02655 * 1 2 3 28 28 H 1.09001 * 109.46808 * 30.02328 * 1 2 3 29 29 H 1.09001 * 109.46973 * 150.01867 * 1 2 3 30 30 H 1.07998 * 119.99780 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.99685 * 180.20839 * 4 3 2 32 32 H 1.09002 * 109.46550 * 263.83323 * 6 5 4 33 33 H 1.08997 * 109.47342 * 143.84042 * 6 5 4 34 34 H 1.08994 * 109.46722 * 23.82971 * 6 5 4 35 35 H 1.09005 * 109.58176 * 246.19934 * 12 11 8 36 36 H 1.08999 * 109.58928 * 6.61898 * 12 11 8 37 37 H 1.08990 * 109.63520 * 294.86174 * 13 12 11 38 38 H 1.09002 * 109.45878 * 174.73213 * 13 12 11 39 39 H 1.08995 * 109.46057 * 178.48914 * 14 13 12 40 40 H 1.09005 * 109.44928 * 58.52227 * 14 13 12 41 41 H 0.97002 * 120.00356 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58936 * 353.37825 * 25 11 8 43 43 H 1.09007 * 109.58556 * 113.80030 * 25 11 8 44 44 H 1.08001 * 119.99911 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0035 5 6 4.2717 -0.0001 -0.0013 6 6 5.7788 -0.0002 -0.0018 7 6 3.5806 -1.1970 0.0000 8 16 4.4616 -2.7230 0.0007 9 8 5.5071 -2.5823 0.9526 10 8 3.4830 -3.7512 0.0671 11 7 5.1922 -2.8679 -1.4784 12 6 4.4664 -3.4435 -2.6188 13 6 4.5359 -2.4543 -3.7920 14 6 6.0007 -2.1201 -4.0837 15 6 6.6283 -1.4558 -2.8562 16 1 6.0717 -0.5524 -2.6068 17 6 8.0613 -1.0977 -3.1554 18 1 8.8587 -1.5209 -2.5626 19 6 8.3542 -0.2300 -4.1861 20 7 7.3832 0.2848 -4.9084 21 14 10.1305 0.2132 -4.5575 22 1 10.8869 -1.0181 -4.8993 23 1 10.1760 1.1559 -5.7041 24 1 10.7405 0.8540 -3.3648 25 6 6.5806 -2.4286 -1.6737 26 6 2.1980 -1.1970 0.0005 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1325 0.0069 32 1 6.1417 -0.1067 -1.0241 33 1 6.1423 -0.8322 0.6012 34 1 6.1422 0.9382 0.4168 35 1 4.9277 -4.3885 -2.9061 36 1 3.4256 -3.6119 -2.3421 37 1 3.9990 -1.5416 -3.5338 38 1 4.0831 -2.9055 -4.6748 39 1 6.0555 -1.4391 -4.9330 40 1 6.5425 -3.0366 -4.3175 41 1 7.5892 0.8955 -5.6333 42 1 6.9353 -1.9269 -0.7733 43 1 7.2108 -3.2924 -1.8855 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397589056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:31 Heat of formation + Delta-G solvation = -56.415569 kcal Electronic energy + Delta-G solvation = -26978.371692 eV Core-core repulsion = 23408.157856 eV Total energy + Delta-G solvation = -3570.213836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.43031 -37.82549 -37.12046 -35.59006 -33.81117 -33.36411 -31.19186 -31.11617 -30.28099 -29.04245 -25.17286 -24.87259 -23.62244 -23.18701 -21.71182 -21.24689 -19.49437 -18.33174 -17.44625 -16.75157 -16.30298 -15.93094 -15.60673 -15.11131 -14.64397 -14.21289 -14.12379 -13.88183 -13.63756 -13.34883 -13.15988 -13.01758 -12.75797 -12.73471 -12.50191 -12.29402 -12.09646 -11.97763 -11.80788 -11.47227 -11.34741 -11.17519 -11.10792 -11.00255 -10.85304 -10.75967 -10.34277 -10.22313 -9.97607 -9.82442 -9.44507 -9.18455 -8.89492 -8.51166 -8.39070 -8.18690 -6.06941 -4.14776 0.67806 1.00142 1.39014 3.22135 3.27778 3.32874 3.36152 3.60366 4.03565 4.37071 4.55001 4.79841 4.88660 4.95963 5.18657 5.19504 5.23825 5.25457 5.48588 5.51784 5.66543 5.67878 5.75966 5.78519 5.94684 5.97516 6.04537 6.13035 6.18509 6.23278 6.30078 6.44116 6.45333 6.52117 6.58009 6.62623 6.63048 6.84680 6.98228 6.99103 7.19438 7.41397 7.65587 7.85767 8.03825 8.33098 8.88820 9.50901 10.97945 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.004973 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.021062 B = 5628.883747 C = 6170.718850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.142 4.142 5 C 0.036 3.964 6 C -0.202 4.202 7 C -0.677 4.677 8 S 2.691 3.309 9 O -0.959 6.959 10 O -0.971 6.971 11 N -0.989 5.989 12 C 0.127 3.873 13 C -0.135 4.135 14 C -0.110 4.110 15 C 0.037 3.963 16 H 0.036 0.964 17 C -0.518 4.518 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.114 3.886 26 C -0.021 4.021 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.960 -0.507 6.831 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.126 4.126 3 C -0.082 4.082 4 C -0.161 4.161 5 C 0.035 3.965 6 C -0.258 4.258 7 C -0.763 4.763 8 S 2.783 3.217 9 O -0.949 6.949 10 O -0.961 6.961 11 N -0.829 5.829 12 C 0.002 3.998 13 C -0.174 4.174 14 C -0.148 4.148 15 C 0.018 3.982 16 H 0.054 0.946 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.009 4.009 26 C -0.040 4.040 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.948 -0.991 7.372 13.235 hybrid contribution 0.605 1.181 -0.685 1.493 sum -10.343 0.190 6.687 12.318 Atomic orbital electron populations 1.20755 0.90832 1.02913 1.02238 1.19926 0.96237 0.93165 1.03254 1.21266 0.94314 0.97543 0.95068 1.21196 0.94206 0.97959 1.02692 1.19646 0.96389 0.91567 0.88918 1.22278 0.89931 1.06168 1.07376 1.30874 1.06019 1.20306 1.19115 1.01881 0.73061 0.73653 0.73108 1.93480 1.55510 1.86610 1.59345 1.93509 1.61863 1.54403 1.86365 1.57577 1.23065 1.75755 1.26459 1.21495 0.95146 0.96646 0.86560 1.22082 1.00852 0.98278 0.96159 1.21578 0.90553 0.99966 1.02679 1.19081 0.96424 0.92836 0.89892 0.94585 1.21067 0.91785 1.26983 1.15866 0.92336 1.24916 0.97000 0.95732 0.95931 1.69862 1.31233 1.31127 1.20337 0.86681 0.85289 0.78326 0.77836 1.20255 1.21414 1.20207 1.22088 0.77938 0.99272 1.01608 1.20760 0.91880 0.98600 0.92793 0.91314 0.91533 0.91359 0.85689 0.85210 0.86186 0.87110 0.90435 0.91315 0.90868 0.92504 0.92617 0.88782 0.94473 0.92900 0.89755 0.91757 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.12 -1.61 5.88 -104.63 -0.62 -2.23 16 3 C -0.06 -0.81 9.70 -39.58 -0.38 -1.19 16 4 C -0.14 -2.04 9.68 -39.58 -0.38 -2.42 16 5 C 0.04 0.59 5.87 -104.62 -0.61 -0.02 16 6 C -0.20 -3.41 8.05 36.01 0.29 -3.12 16 7 C -0.68 -11.18 5.92 -39.58 -0.23 -11.42 16 8 S 2.69 47.20 5.15 -107.50 -0.55 46.64 16 9 O -0.96 -18.40 13.93 -57.17 -0.80 -19.19 16 10 O -0.97 -17.84 15.83 -57.17 -0.90 -18.74 16 11 N -0.99 -17.52 3.28 -113.27 -0.37 -17.89 16 12 C 0.13 2.06 6.39 -3.49 -0.02 2.04 16 13 C -0.13 -2.38 6.10 -26.39 -0.16 -2.55 16 14 C -0.11 -2.36 4.96 -26.69 -0.13 -2.49 16 15 C 0.04 0.83 1.68 -91.65 -0.15 0.68 16 16 H 0.04 0.87 6.05 -51.92 -0.31 0.55 16 17 C -0.52 -12.97 8.56 -34.44 -0.29 -13.27 16 18 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 19 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -23.63 11.32 55.43 0.63 -23.01 16 21 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.11 2.23 4.69 -3.71 -0.02 2.22 16 26 C -0.02 -0.31 9.20 -39.58 -0.36 -0.67 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.12 2.27 3.94 -51.93 -0.20 2.06 16 33 H 0.11 1.94 4.09 -51.93 -0.21 1.73 16 34 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.07 7.24 -51.93 -0.38 0.69 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 2.30 6.05 -51.93 -0.31 1.99 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.08 1.61 4.71 -51.93 -0.24 1.37 16 43 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 44 H 0.14 1.85 7.34 -52.49 -0.39 1.46 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -29.03 347.04 -10.84 -39.87 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.23 Total: 5.46 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: -2.82 Total: -33.52 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.26 Total: -40.89 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.70 Total: -37.93 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 47.20 SS G_CDS: -0.55 Total: 46.64 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.03 -10.84 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.545 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds