Wall clock time and date at job start Tue Mar 31 2020 14:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38253 * 120.00432 * 2 1 4 4 C 1.38218 * 120.00359 * 179.83386 * 3 2 1 5 5 C 1.38250 * 119.99570 * 0.39623 * 4 3 2 6 6 C 1.50708 * 119.99876 * 179.81260 * 5 4 3 7 7 C 1.38213 * 120.00290 * 359.53932 * 5 4 3 8 8 S 1.76202 * 120.00055 * 180.25494 * 7 5 4 9 9 O 1.42097 * 106.40267 * 44.33766 * 8 7 5 10 10 O 1.42101 * 106.40194 * 177.26346 * 8 7 5 11 11 N 1.65604 * 107.21780 * 290.79843 * 8 7 5 12 12 C 1.46924 * 120.63184 * 274.10176 * 11 8 7 13 13 C 1.53620 * 108.54606 * 126.36449 * 12 11 8 14 14 C 1.53044 * 109.24156 * 54.85658 * 13 12 11 15 15 C 1.53038 * 109.53681 * 298.51146 * 14 13 12 16 16 H 1.09007 * 109.49710 * 301.41004 * 15 14 13 17 17 C 1.50702 * 109.50114 * 181.32016 * 15 14 13 18 18 H 1.07999 * 119.99719 * 240.16574 * 17 15 14 19 19 C 1.37876 * 120.00026 * 60.15708 * 17 15 14 20 20 N 1.31513 * 120.00210 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99861 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47375 * 60.00016 * 21 19 17 23 23 H 1.48504 * 109.46903 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47148 * 299.99848 * 21 19 17 25 25 C 1.46923 * 120.62850 * 94.37230 * 11 8 7 26 26 C 1.38216 * 119.99879 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47036 * 270.02655 * 1 2 3 28 28 H 1.09001 * 109.46808 * 30.02328 * 1 2 3 29 29 H 1.09001 * 109.46973 * 150.01867 * 1 2 3 30 30 H 1.07998 * 119.99780 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.99685 * 180.20839 * 4 3 2 32 32 H 1.09002 * 109.46550 * 263.83323 * 6 5 4 33 33 H 1.08997 * 109.47342 * 143.84042 * 6 5 4 34 34 H 1.08994 * 109.46722 * 23.82971 * 6 5 4 35 35 H 1.09005 * 109.58176 * 246.19934 * 12 11 8 36 36 H 1.08999 * 109.58928 * 6.61898 * 12 11 8 37 37 H 1.08990 * 109.63520 * 294.86174 * 13 12 11 38 38 H 1.09002 * 109.45878 * 174.73213 * 13 12 11 39 39 H 1.08995 * 109.46057 * 178.48914 * 14 13 12 40 40 H 1.09005 * 109.44928 * 58.52227 * 14 13 12 41 41 H 0.97002 * 120.00356 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58936 * 353.37825 * 25 11 8 43 43 H 1.09007 * 109.58556 * 113.80030 * 25 11 8 44 44 H 1.08001 * 119.99911 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0035 5 6 4.2717 -0.0001 -0.0013 6 6 5.7788 -0.0002 -0.0018 7 6 3.5806 -1.1970 0.0000 8 16 4.4616 -2.7230 0.0007 9 8 5.5071 -2.5823 0.9526 10 8 3.4830 -3.7512 0.0671 11 7 5.1922 -2.8679 -1.4784 12 6 4.4664 -3.4435 -2.6188 13 6 4.5359 -2.4543 -3.7920 14 6 6.0007 -2.1201 -4.0837 15 6 6.6283 -1.4558 -2.8562 16 1 6.0717 -0.5524 -2.6068 17 6 8.0613 -1.0977 -3.1554 18 1 8.8587 -1.5209 -2.5626 19 6 8.3542 -0.2300 -4.1861 20 7 7.3832 0.2848 -4.9084 21 14 10.1305 0.2132 -4.5575 22 1 10.8869 -1.0181 -4.8993 23 1 10.1760 1.1559 -5.7041 24 1 10.7405 0.8540 -3.3648 25 6 6.5806 -2.4286 -1.6737 26 6 2.1980 -1.1970 0.0005 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1325 0.0069 32 1 6.1417 -0.1067 -1.0241 33 1 6.1423 -0.8322 0.6012 34 1 6.1422 0.9382 0.4168 35 1 4.9277 -4.3885 -2.9061 36 1 3.4256 -3.6119 -2.3421 37 1 3.9990 -1.5416 -3.5338 38 1 4.0831 -2.9055 -4.6748 39 1 6.0555 -1.4391 -4.9330 40 1 6.5425 -3.0366 -4.3175 41 1 7.5892 0.8955 -5.6333 42 1 6.9353 -1.9269 -0.7733 43 1 7.2108 -3.2924 -1.8855 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397589056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:30 Heat of formation + Delta-G solvation = -72.518559 kcal Electronic energy + Delta-G solvation = -26979.069970 eV Core-core repulsion = 23408.157856 eV Total energy + Delta-G solvation = -3570.912114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52538 -39.36577 -38.54436 -37.02757 -35.17775 -34.88574 -32.71281 -32.26308 -31.94906 -30.11352 -27.00065 -25.97133 -25.09460 -24.34451 -23.32157 -22.37827 -21.07333 -19.76613 -18.90071 -18.11440 -18.00815 -17.26905 -16.71909 -16.60324 -16.25461 -15.50122 -15.30158 -15.22798 -15.10605 -14.77097 -14.55963 -14.36176 -14.17859 -13.89208 -13.80788 -13.50151 -13.34280 -13.28445 -13.07329 -12.88078 -12.77120 -12.72851 -12.65856 -12.50484 -12.40395 -12.16057 -11.86664 -11.75548 -11.60200 -11.41659 -11.04254 -10.70379 -10.36962 -10.32534 -9.75490 -9.51740 -8.03202 -6.16255 -0.65795 -0.16456 0.29168 1.46257 1.47373 1.53652 1.88767 2.44390 2.48235 2.71395 3.24498 3.24794 3.71840 3.80609 3.82978 3.94380 4.19483 4.25183 4.28427 4.34933 4.48382 4.57531 4.59309 4.63895 4.73120 4.77239 4.83735 4.84960 4.88971 4.93535 4.99214 5.09052 5.12611 5.17346 5.29383 5.30967 5.38372 5.42249 5.45942 5.61670 5.69203 5.75082 5.92024 6.04365 6.20675 6.44024 6.94452 7.51465 8.99849 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.004973 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.021062 B = 5628.883747 C = 6170.718850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C -0.060 4.060 4 C -0.151 4.151 5 C 0.010 3.990 6 C -0.199 4.199 7 C -0.688 4.688 8 S 2.701 3.299 9 O -0.982 6.982 10 O -0.980 6.980 11 N -0.991 5.991 12 C 0.123 3.877 13 C -0.125 4.125 14 C -0.106 4.106 15 C 0.039 3.961 16 H 0.017 0.983 17 C -0.532 4.532 18 H 0.056 0.944 19 C 0.023 3.977 20 N -0.911 5.911 21 Si 0.944 3.056 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.273 1.273 25 C 0.124 3.876 26 C -0.036 4.036 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.259 0.741 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 -0.167 7.236 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.122 4.122 3 C -0.078 4.078 4 C -0.170 4.170 5 C 0.008 3.992 6 C -0.254 4.254 7 C -0.777 4.777 8 S 2.795 3.205 9 O -0.972 6.972 10 O -0.970 6.970 11 N -0.830 5.830 12 C -0.002 4.002 13 C -0.164 4.164 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.035 0.965 17 C -0.570 4.570 18 H 0.074 0.926 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.771 3.229 22 H -0.199 1.199 23 H -0.215 1.215 24 H -0.198 1.198 25 C 0.000 4.000 26 C -0.056 4.056 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.163 0.837 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.754 -0.688 7.780 14.956 hybrid contribution 1.089 1.131 -0.783 1.754 sum -11.665 0.443 6.998 13.610 Atomic orbital electron populations 1.20859 0.88011 1.04218 1.03629 1.20395 0.98274 0.92426 1.01117 1.21716 0.93716 0.99122 0.93243 1.21492 0.95379 0.97782 1.02305 1.19704 0.95965 0.92608 0.90904 1.22152 0.91033 1.06543 1.05721 1.30619 1.06854 1.19285 1.20901 1.01412 0.72654 0.73858 0.72580 1.93449 1.56527 1.87079 1.60142 1.93487 1.61820 1.55303 1.86430 1.57522 1.22474 1.75948 1.27023 1.21671 0.96448 0.96591 0.85468 1.21963 0.97996 0.98556 0.97895 1.21423 0.93232 0.98788 1.01001 1.18988 0.94860 0.92881 0.91320 0.96506 1.21439 0.93241 1.26758 1.15594 0.92583 1.25548 1.00113 0.95943 0.96024 1.69994 1.32658 1.31687 1.20726 0.85827 0.81543 0.77996 0.77535 1.19932 1.21452 1.19834 1.21815 0.79202 0.98572 1.00440 1.21035 0.91254 1.00075 0.93198 0.89737 0.89713 0.90673 0.82106 0.83691 0.88563 0.88137 0.88991 0.89810 0.88672 0.93454 0.90202 0.91958 0.94835 0.93195 0.89845 0.91641 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.01 71.24 0.71 -0.94 16 2 C -0.12 -2.78 5.88 -19.87 -0.12 -2.90 16 3 C -0.06 -1.35 9.70 22.27 0.22 -1.13 16 4 C -0.15 -4.13 9.68 22.27 0.22 -3.91 16 5 C 0.01 0.32 5.87 -19.86 -0.12 0.20 16 6 C -0.20 -6.90 8.05 71.24 0.57 -6.32 16 7 C -0.69 -22.37 5.92 22.27 0.13 -22.24 16 8 S 2.70 94.32 5.15 -56.49 -0.29 94.03 16 9 O -0.98 -38.25 13.93 -128.00 -1.78 -40.04 16 10 O -0.98 -35.08 15.83 -128.00 -2.03 -37.10 16 11 N -0.99 -34.96 3.28 -512.29 -1.68 -36.64 16 12 C 0.12 3.84 6.39 86.51 0.55 4.39 16 13 C -0.13 -4.35 6.10 30.82 0.19 -4.16 16 14 C -0.11 -4.64 4.96 30.62 0.15 -4.49 16 15 C 0.04 1.80 1.68 -11.46 -0.02 1.78 16 16 H 0.02 0.85 6.05 -2.38 -0.01 0.84 16 17 C -0.53 -27.22 8.56 25.60 0.22 -27.00 16 18 H 0.06 2.82 7.74 -2.91 -0.02 2.80 16 19 C 0.02 1.20 5.30 84.65 0.45 1.65 16 20 N -0.91 -49.69 11.32 21.45 0.24 -49.45 16 21 Si 0.94 41.82 29.54 68.60 2.03 43.84 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.12 4.93 4.69 86.36 0.41 5.34 16 26 C -0.04 -1.01 9.20 22.27 0.20 -0.80 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 29 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 30 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.10 3.81 3.94 -2.39 -0.01 3.80 16 33 H 0.10 3.65 4.09 -2.39 -0.01 3.64 16 34 H 0.09 2.76 8.04 -2.39 -0.02 2.74 16 35 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.10 2.58 7.24 -2.39 -0.02 2.56 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 3.13 6.05 -2.39 -0.01 3.12 16 40 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 42 H 0.08 3.31 4.71 -2.39 -0.01 3.30 16 43 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 44 H 0.15 3.69 7.34 -2.91 -0.02 3.66 16 Total: -1.00 -63.04 347.04 1.26 -61.78 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 1.01 Total: 24.11 kcal Atomic # 6 Polarization: -64.31 SS G_CDS: 3.77 Total: -60.54 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.44 Total: -86.08 kcal Atomic # 8 Polarization: -73.33 SS G_CDS: -3.81 Total: -77.14 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 94.32 SS G_CDS: -0.29 Total: 94.03 kcal Total: -63.04 1.26 -61.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.737 kcal (2) G-P(sol) polarization free energy of solvation -63.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds