Wall clock time and date at job start Tue Mar 31 2020 14:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 119.99751 * 2 1 4 4 C 1.38222 * 119.99551 * 179.78949 * 3 2 1 5 5 C 1.38254 * 119.99920 * 0.46928 * 4 3 2 6 6 S 1.76199 * 119.99824 * 179.78687 * 5 4 3 7 7 O 1.42106 * 106.40481 * 23.26729 * 6 5 4 8 8 O 1.42100 * 106.40287 * 156.18363 * 6 5 4 9 9 N 1.65599 * 107.21905 * 269.72556 * 6 5 4 10 10 C 1.46930 * 120.62953 * 269.71963 * 9 6 5 11 11 C 1.52763 * 109.00851 * 233.58154 * 10 9 6 12 12 C 1.53038 * 109.38358 * 305.59261 * 11 10 9 13 13 C 1.53032 * 109.54215 * 61.23545 * 12 11 10 14 14 H 1.09008 * 109.52546 * 58.60297 * 13 12 11 15 15 C 1.50698 * 109.50011 * 178.68034 * 13 12 11 16 16 H 1.08004 * 119.99826 * 119.84426 * 15 13 12 17 17 C 1.37875 * 120.00512 * 299.84091 * 15 13 12 18 18 N 1.31515 * 119.99798 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00235 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47132 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47021 * 120.00496 * 19 17 15 22 22 H 1.48500 * 109.46896 * 240.00331 * 19 17 15 23 23 C 1.46925 * 120.63279 * 89.99890 * 9 6 5 24 24 C 1.38213 * 120.00245 * 359.51186 * 5 4 3 25 25 C 1.38216 * 120.00089 * 180.02562 * 2 1 3 26 26 C 1.50701 * 120.00078 * 359.97050 * 25 2 1 27 27 H 1.08992 * 109.47094 * 269.97472 * 1 2 3 28 28 H 1.09005 * 109.47042 * 29.97700 * 1 2 3 29 29 H 1.09006 * 109.47275 * 149.97369 * 1 2 3 30 30 H 1.07997 * 120.00273 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.99894 * 180.25363 * 4 3 2 32 32 H 1.08992 * 109.58634 * 353.41986 * 10 9 6 33 33 H 1.08999 * 109.58601 * 113.84252 * 10 9 6 34 34 H 1.09000 * 109.56426 * 185.55127 * 11 10 9 35 35 H 1.09006 * 109.35603 * 65.50068 * 11 10 9 36 36 H 1.09003 * 109.45726 * 301.21744 * 12 11 10 37 37 H 1.08997 * 109.44765 * 181.25510 * 12 11 10 38 38 H 0.96992 * 120.00288 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.58772 * 246.15799 * 23 9 6 40 40 H 1.09003 * 109.58628 * 6.58160 * 23 9 6 41 41 H 1.07997 * 120.00154 * 180.25688 * 24 5 4 42 42 H 1.08997 * 109.47372 * 270.03079 * 26 25 2 43 43 H 1.09005 * 109.46390 * 30.03086 * 26 25 2 44 44 H 1.08992 * 109.46973 * 150.02255 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0044 5 6 4.2716 0.0000 -0.0010 6 16 6.0336 0.0000 -0.0011 7 8 6.4350 1.2499 0.5430 8 8 6.4349 -1.2495 0.5437 9 7 6.5238 -0.0004 -1.5829 10 6 6.7513 -1.2649 -2.2957 11 6 8.1548 -1.2507 -2.8986 12 6 8.3225 -0.0009 -3.7657 13 6 8.1543 1.2494 -2.8995 14 1 8.8921 1.2387 -2.0972 15 6 8.3516 2.4793 -3.7478 16 1 7.5531 3.1995 -3.8487 17 6 9.5515 2.6853 -4.3949 18 7 10.5237 1.8082 -4.2724 19 14 9.7957 4.2095 -5.4469 20 1 8.5595 5.0317 -5.4216 21 1 10.9296 5.0045 -4.9107 22 1 10.0926 3.8040 -6.8443 23 6 6.7453 1.2636 -2.2983 24 6 3.5806 -1.1970 -0.0006 25 6 2.1981 -1.1970 -0.0005 26 6 1.4446 -2.5021 -0.0004 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5143 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1326 0.0085 32 1 6.6629 -2.0983 -1.5988 33 1 6.0154 -1.3727 -3.0925 34 1 8.2978 -2.1407 -3.5115 35 1 8.8926 -1.2385 -2.0963 36 1 7.5685 -0.0013 -4.5530 37 1 9.3159 -0.0010 -4.2143 38 1 11.3677 1.9528 -4.7279 39 1 6.0090 1.3662 -3.0953 40 1 6.6530 2.0980 -1.6031 41 1 4.1206 -2.1322 -0.0006 42 1 1.2629 -2.8167 1.0272 43 1 0.4922 -2.3717 -0.5144 44 1 2.0336 -3.2617 -0.5143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397665097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:08 Heat of formation + Delta-G solvation = -63.539893 kcal Electronic energy + Delta-G solvation = -25872.177190 eV Core-core repulsion = 22301.654420 eV Total energy + Delta-G solvation = -3570.522770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73092 -37.70377 -36.97692 -35.52416 -33.72933 -33.29448 -32.41501 -31.10278 -30.08705 -27.99262 -26.81045 -25.10573 -23.60889 -22.48893 -21.65324 -21.52283 -19.48949 -18.40083 -17.31284 -17.17016 -16.25949 -16.12520 -15.46517 -15.20516 -14.64939 -14.57497 -14.32884 -13.91060 -13.45963 -13.37780 -13.26167 -13.11485 -12.95173 -12.79484 -12.69860 -12.35374 -12.19920 -12.14030 -11.92583 -11.77516 -11.71338 -11.32741 -11.24138 -10.97904 -10.82999 -10.68270 -10.59873 -10.19555 -9.92659 -9.78415 -9.37600 -9.19547 -8.90901 -8.81026 -8.43429 -8.15871 -5.99635 -4.06927 0.56169 0.84391 1.16716 3.14105 3.29903 3.38229 3.41522 3.51149 4.06382 4.37934 4.43676 4.51455 4.65778 4.69709 4.92166 5.07905 5.17795 5.20514 5.26034 5.31467 5.36087 5.44762 5.52358 5.55163 5.71274 5.78859 5.80880 5.88995 6.01639 6.06175 6.08601 6.25466 6.31530 6.35483 6.48790 6.63678 6.65864 6.74292 6.90652 7.03780 7.24281 7.46041 7.72643 7.97607 8.11070 8.40589 8.96592 9.57748 11.05945 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.003634 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.202252 B = 7703.729649 C = 8241.749429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.039 4.039 3 C -0.139 4.139 4 C -0.020 4.020 5 C -0.674 4.674 6 S 2.685 3.315 7 O -0.955 6.955 8 O -0.966 6.966 9 N -0.989 5.989 10 C 0.123 3.877 11 C -0.132 4.132 12 C -0.110 4.110 13 C 0.041 3.959 14 H 0.033 0.967 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.124 3.876 24 C -0.018 4.018 25 C -0.113 4.113 26 C -0.117 4.117 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.095 0.905 38 H 0.260 0.740 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.608 -7.443 6.562 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.040 4.040 3 C -0.158 4.158 4 C -0.039 4.039 5 C -0.759 4.759 6 S 2.776 3.224 7 O -0.945 6.945 8 O -0.956 6.956 9 N -0.829 5.829 10 C -0.002 4.002 11 C -0.171 4.171 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.051 0.949 15 C -0.553 4.553 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C 0.000 4.000 24 C -0.037 4.037 25 C -0.114 4.114 26 C -0.173 4.173 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.155 0.845 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.935 -7.475 7.246 20.738 hybrid contribution -0.478 0.876 -0.935 1.367 sum -18.413 -6.600 6.311 20.553 Atomic orbital electron populations 1.20975 0.90897 1.03368 1.02781 1.20051 0.96189 0.92827 0.94910 1.21150 0.94204 0.97772 1.02692 1.20950 0.94616 0.96840 0.91523 1.31295 1.28281 0.99225 1.17113 1.02130 0.73641 0.73490 0.73133 1.93572 1.80719 1.43664 1.76530 1.93526 1.81066 1.44196 1.76826 1.57595 1.80754 1.13647 1.30880 1.21355 0.98707 0.83962 0.96169 1.21883 0.95033 1.00084 1.00080 1.21587 1.03557 0.92454 0.97190 1.18955 0.89804 0.94091 0.95035 0.94929 1.21122 0.99245 1.05789 1.29147 0.92384 1.24944 0.95912 0.96441 0.96570 1.69886 1.04388 1.34914 1.43424 0.86532 0.78163 0.83197 0.80049 1.19772 1.21048 1.21113 1.21875 1.01026 0.81651 0.95445 1.20781 0.93848 0.96699 0.92386 1.19858 0.93703 0.95260 1.02568 1.20864 1.00094 0.93777 1.02570 0.90557 0.91104 0.90706 0.85167 0.84138 0.90370 0.92181 0.92444 0.92225 0.94607 0.88707 0.93018 0.92488 0.90271 0.84455 0.90991 0.91028 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.60 36.00 0.35 -0.52 16 2 C -0.04 -0.41 5.88 -104.62 -0.62 -1.03 16 3 C -0.14 -1.58 9.70 -39.58 -0.38 -1.96 16 4 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 5 C -0.67 -9.89 5.97 -39.58 -0.24 -10.13 16 6 S 2.69 46.94 5.73 -107.50 -0.62 46.32 16 7 O -0.95 -19.25 15.87 -57.17 -0.91 -20.16 16 8 O -0.97 -18.07 15.86 -57.17 -0.91 -18.98 16 9 N -0.99 -17.86 3.30 -113.77 -0.37 -18.23 16 10 C 0.12 2.03 6.45 -3.93 -0.03 2.01 16 11 C -0.13 -2.46 6.06 -26.83 -0.16 -2.62 16 12 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 13 C 0.04 1.01 2.25 -91.66 -0.21 0.80 16 14 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 15 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 19 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.12 2.52 5.70 -3.71 -0.02 2.50 16 24 C -0.02 -0.23 9.18 -39.58 -0.36 -0.60 16 25 C -0.11 -1.25 5.88 -104.62 -0.62 -1.87 16 26 C -0.12 -0.91 9.60 36.01 0.35 -0.56 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.44 5.95 -51.93 -0.31 0.13 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 32 H 0.08 1.16 6.91 -51.93 -0.36 0.80 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 41 H 0.14 1.63 7.62 -52.49 -0.40 1.23 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.45 5.95 -51.93 -0.31 0.14 16 44 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 359.99 15.07 5.43 5.43 Total: -1.00 -31.85 359.99 -11.25 -43.10 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.64 Total: 0.52 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -2.84 Total: -29.62 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.25 Total: -42.50 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -1.81 Total: -39.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 46.94 SS G_CDS: -0.62 Total: 46.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.85 -11.25 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.443 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds