Wall clock time and date at job start Tue Mar 31 2020 14:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 119.99751 * 2 1 4 4 C 1.38222 * 119.99551 * 179.78949 * 3 2 1 5 5 C 1.38254 * 119.99920 * 0.46928 * 4 3 2 6 6 S 1.76199 * 119.99824 * 179.78687 * 5 4 3 7 7 O 1.42106 * 106.40481 * 23.26729 * 6 5 4 8 8 O 1.42100 * 106.40287 * 156.18363 * 6 5 4 9 9 N 1.65599 * 107.21905 * 269.72556 * 6 5 4 10 10 C 1.46930 * 120.62953 * 269.71963 * 9 6 5 11 11 C 1.52763 * 109.00851 * 233.58154 * 10 9 6 12 12 C 1.53038 * 109.38358 * 305.59261 * 11 10 9 13 13 C 1.53032 * 109.54215 * 61.23545 * 12 11 10 14 14 H 1.09008 * 109.52546 * 58.60297 * 13 12 11 15 15 C 1.50698 * 109.50011 * 178.68034 * 13 12 11 16 16 H 1.08004 * 119.99826 * 119.84426 * 15 13 12 17 17 C 1.37875 * 120.00512 * 299.84091 * 15 13 12 18 18 N 1.31515 * 119.99798 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00235 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47132 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47021 * 120.00496 * 19 17 15 22 22 H 1.48500 * 109.46896 * 240.00331 * 19 17 15 23 23 C 1.46925 * 120.63279 * 89.99890 * 9 6 5 24 24 C 1.38213 * 120.00245 * 359.51186 * 5 4 3 25 25 C 1.38216 * 120.00089 * 180.02562 * 2 1 3 26 26 C 1.50701 * 120.00078 * 359.97050 * 25 2 1 27 27 H 1.08992 * 109.47094 * 269.97472 * 1 2 3 28 28 H 1.09005 * 109.47042 * 29.97700 * 1 2 3 29 29 H 1.09006 * 109.47275 * 149.97369 * 1 2 3 30 30 H 1.07997 * 120.00273 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.99894 * 180.25363 * 4 3 2 32 32 H 1.08992 * 109.58634 * 353.41986 * 10 9 6 33 33 H 1.08999 * 109.58601 * 113.84252 * 10 9 6 34 34 H 1.09000 * 109.56426 * 185.55127 * 11 10 9 35 35 H 1.09006 * 109.35603 * 65.50068 * 11 10 9 36 36 H 1.09003 * 109.45726 * 301.21744 * 12 11 10 37 37 H 1.08997 * 109.44765 * 181.25510 * 12 11 10 38 38 H 0.96992 * 120.00288 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.58772 * 246.15799 * 23 9 6 40 40 H 1.09003 * 109.58628 * 6.58160 * 23 9 6 41 41 H 1.07997 * 120.00154 * 180.25688 * 24 5 4 42 42 H 1.08997 * 109.47372 * 270.03079 * 26 25 2 43 43 H 1.09005 * 109.46390 * 30.03086 * 26 25 2 44 44 H 1.08992 * 109.46973 * 150.02255 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0044 5 6 4.2716 0.0000 -0.0010 6 16 6.0336 0.0000 -0.0011 7 8 6.4350 1.2499 0.5430 8 8 6.4349 -1.2495 0.5437 9 7 6.5238 -0.0004 -1.5829 10 6 6.7513 -1.2649 -2.2957 11 6 8.1548 -1.2507 -2.8986 12 6 8.3225 -0.0009 -3.7657 13 6 8.1543 1.2494 -2.8995 14 1 8.8921 1.2387 -2.0972 15 6 8.3516 2.4793 -3.7478 16 1 7.5531 3.1995 -3.8487 17 6 9.5515 2.6853 -4.3949 18 7 10.5237 1.8082 -4.2724 19 14 9.7957 4.2095 -5.4469 20 1 8.5595 5.0317 -5.4216 21 1 10.9296 5.0045 -4.9107 22 1 10.0926 3.8040 -6.8443 23 6 6.7453 1.2636 -2.2983 24 6 3.5806 -1.1970 -0.0006 25 6 2.1981 -1.1970 -0.0005 26 6 1.4446 -2.5021 -0.0004 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5143 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1326 0.0085 32 1 6.6629 -2.0983 -1.5988 33 1 6.0154 -1.3727 -3.0925 34 1 8.2978 -2.1407 -3.5115 35 1 8.8926 -1.2385 -2.0963 36 1 7.5685 -0.0013 -4.5530 37 1 9.3159 -0.0010 -4.2143 38 1 11.3677 1.9528 -4.7279 39 1 6.0090 1.3662 -3.0953 40 1 6.6530 2.0980 -1.6031 41 1 4.1206 -2.1322 -0.0006 42 1 1.2629 -2.8167 1.0272 43 1 0.4922 -2.3717 -0.5144 44 1 2.0336 -3.2617 -0.5143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397665097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:08 Heat of formation + Delta-G solvation = -82.690543 kcal Electronic energy + Delta-G solvation = -25873.007624 eV Core-core repulsion = 22301.654420 eV Total energy + Delta-G solvation = -3571.353205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59729 -39.32395 -38.44413 -36.99893 -35.20710 -34.55477 -33.21822 -32.74839 -31.88645 -28.72025 -27.56831 -27.04037 -25.20658 -23.45393 -23.23496 -22.47042 -21.16604 -19.73176 -18.85926 -18.45407 -18.04787 -17.31876 -16.65713 -16.37124 -16.34306 -15.41339 -15.31070 -15.27249 -15.11116 -14.85986 -14.46621 -14.34103 -14.23007 -13.85004 -13.61684 -13.60970 -13.29875 -13.23106 -13.16923 -13.03606 -12.92233 -12.79811 -12.68990 -12.61756 -12.49554 -12.05196 -11.85515 -11.79640 -11.68569 -11.55949 -11.08010 -10.75666 -10.41661 -10.10407 -9.80875 -9.73740 -8.06219 -6.21217 -0.70622 -0.21646 0.26564 1.42866 1.45075 1.56173 1.90646 2.45015 2.46924 2.74917 3.19257 3.20827 3.72374 3.81944 3.83763 3.88439 4.17794 4.22542 4.26249 4.33383 4.47139 4.56618 4.61745 4.65566 4.71771 4.77320 4.79912 4.85115 4.90582 4.91441 4.95346 5.07186 5.08604 5.13820 5.18683 5.27827 5.32494 5.36090 5.52420 5.54113 5.66163 5.72793 5.90137 5.99103 6.17584 6.38703 6.90542 7.46802 8.98170 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.003634 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.202252 B = 7703.729649 C = 8241.749429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.035 4.035 3 C -0.142 4.142 4 C -0.042 4.042 5 C -0.680 4.680 6 S 2.693 3.307 7 O -0.993 6.993 8 O -0.984 6.984 9 N -0.995 5.995 10 C 0.121 3.879 11 C -0.128 4.128 12 C -0.103 4.103 13 C 0.034 3.966 14 H -0.012 1.012 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.279 1.279 23 C 0.136 3.864 24 C -0.033 4.033 25 C -0.115 4.115 26 C -0.117 4.117 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.326 -8.222 6.081 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.036 4.036 3 C -0.160 4.160 4 C -0.061 4.061 5 C -0.770 4.770 6 S 2.789 3.211 7 O -0.983 6.983 8 O -0.974 6.974 9 N -0.834 5.834 10 C -0.003 4.003 11 C -0.168 4.168 12 C -0.141 4.141 13 C 0.014 3.986 14 H 0.006 0.994 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.782 3.218 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.205 1.205 23 C 0.012 3.988 24 C -0.052 4.052 25 C -0.116 4.116 26 C -0.173 4.173 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.174 0.826 31 H 0.153 0.847 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.605 -8.264 6.763 24.100 hybrid contribution 0.571 1.089 -0.720 1.425 sum -21.033 -7.175 6.043 23.031 Atomic orbital electron populations 1.21086 0.87957 1.04799 1.04080 1.20553 0.98303 0.92122 0.92600 1.21490 0.93219 0.99570 1.01748 1.21083 0.96002 0.96272 0.92776 1.30619 1.25320 1.00707 1.20375 1.01477 0.74805 0.72332 0.72468 1.93515 1.82358 1.45195 1.77259 1.93488 1.82366 1.44552 1.77029 1.57514 1.81727 1.13327 1.30788 1.21525 0.97668 0.83804 0.97322 1.21831 0.96294 0.99317 0.99308 1.21385 1.01686 0.93556 0.97462 1.18930 0.91124 0.94579 0.93935 0.99432 1.21517 0.99521 1.06737 1.29330 0.92112 1.25744 0.95748 0.99269 0.97876 1.70040 1.04724 1.36556 1.44291 0.85528 0.78126 0.79711 0.78399 1.18790 1.21193 1.20493 1.21528 0.98821 0.82752 0.95723 1.21009 0.95134 0.96192 0.92873 1.20277 0.93010 0.97167 1.01161 1.20970 1.00636 0.92035 1.03707 0.89076 0.89919 0.89131 0.82606 0.84727 0.88347 0.89374 0.89477 0.94308 0.93957 0.92113 0.93101 0.90815 0.91027 0.83802 0.89822 0.88979 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.60 71.23 0.68 -0.46 16 2 C -0.04 -0.62 5.88 -19.87 -0.12 -0.74 16 3 C -0.14 -2.87 9.70 22.27 0.22 -2.65 16 4 C -0.04 -1.11 9.52 22.27 0.21 -0.90 16 5 C -0.68 -19.63 5.97 22.27 0.13 -19.50 16 6 S 2.69 96.30 5.73 -56.49 -0.32 95.98 16 7 O -0.99 -42.05 15.87 -128.00 -2.03 -44.08 16 8 O -0.98 -37.28 15.86 -128.00 -2.03 -39.31 16 9 N -0.99 -36.27 3.30 -513.86 -1.69 -37.96 16 10 C 0.12 3.86 6.45 86.22 0.56 4.42 16 11 C -0.13 -4.81 6.06 30.53 0.19 -4.63 16 12 C -0.10 -4.76 4.96 30.62 0.15 -4.61 16 13 C 0.03 1.75 2.25 -11.47 -0.03 1.73 16 14 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 15 C -0.53 -29.16 8.56 25.60 0.22 -28.94 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.01 0.68 5.30 84.65 0.45 1.13 16 18 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 19 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 C 0.14 5.69 5.70 86.36 0.49 6.18 16 24 C -0.03 -0.80 9.18 22.27 0.20 -0.59 16 25 C -0.12 -2.20 5.88 -19.87 -0.12 -2.31 16 26 C -0.12 -1.37 9.60 71.24 0.68 -0.68 16 27 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16 29 H 0.09 0.59 5.95 -2.38 -0.01 0.58 16 30 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.13 3.60 7.61 -2.91 -0.02 3.58 16 32 H 0.10 2.76 6.91 -2.39 -0.02 2.75 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.06 3.23 6.05 -2.39 -0.01 3.21 16 38 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.07 3.05 6.92 -2.39 -0.02 3.03 16 41 H 0.14 3.20 7.62 -2.91 -0.02 3.17 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 0.71 5.95 -2.38 -0.01 0.69 16 44 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 Total: -1.00 -71.96 359.99 1.11 -70.85 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.99 Total: 14.58 kcal Atomic # 6 Polarization: -56.48 SS G_CDS: 3.93 Total: -52.55 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -1.45 Total: -91.04 kcal Atomic # 8 Polarization: -79.33 SS G_CDS: -4.06 Total: -83.39 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 96.30 SS G_CDS: -0.32 Total: 95.98 kcal Total: -71.96 1.11 -70.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.843 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds