Wall clock time and date at job start Tue Mar 31 2020 14:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38262 * 119.99723 * 2 1 4 4 C 1.38211 * 119.99620 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00380 * 0.10096 * 4 3 2 6 6 S 1.76197 * 120.00150 * 179.97438 * 5 4 3 7 7 O 1.42103 * 106.40311 * 203.53456 * 6 5 4 8 8 O 1.42097 * 106.40328 * 336.45505 * 6 5 4 9 9 N 1.65599 * 107.21935 * 89.99660 * 6 5 4 10 10 C 1.46925 * 120.63110 * 89.99833 * 9 6 5 11 11 C 1.53193 * 108.77626 * 126.37028 * 10 9 6 12 12 C 1.53040 * 109.30992 * 54.63474 * 11 10 9 13 13 C 1.53038 * 109.54010 * 298.63138 * 12 11 10 14 14 H 1.08999 * 109.50003 * 301.41863 * 13 12 11 15 15 C 1.50702 * 109.49977 * 181.35088 * 13 12 11 16 16 H 1.08000 * 119.99992 * 245.45627 * 15 13 12 17 17 C 1.37877 * 119.99633 * 65.45198 * 15 13 12 18 18 N 1.31506 * 120.00348 * 9.58093 * 17 15 13 19 19 Si 1.86804 * 119.99647 * 189.58280 * 17 15 13 20 20 H 1.48501 * 109.47394 * 94.99049 * 19 17 15 21 21 H 1.48504 * 109.46891 * 214.99051 * 19 17 15 22 22 H 1.48501 * 109.46829 * 334.98729 * 19 17 15 23 23 C 1.46928 * 120.62896 * 269.72078 * 9 6 5 24 24 C 1.38210 * 119.99797 * 359.97438 * 5 4 3 25 25 C 1.38207 * 120.00104 * 180.09175 * 2 1 3 26 26 C 1.50697 * 120.00035 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.47354 * 269.90955 * 1 2 3 28 28 H 1.09001 * 109.47163 * 29.90733 * 1 2 3 29 29 H 1.09005 * 109.46910 * 149.90434 * 1 2 3 30 30 H 1.07999 * 120.00032 * 0.04450 * 3 2 1 31 31 H 1.08004 * 120.00274 * 180.36849 * 4 3 2 32 32 H 1.09007 * 109.58776 * 246.15800 * 10 9 6 33 33 H 1.09000 * 109.58787 * 6.58090 * 10 9 6 34 34 H 1.09002 * 109.50101 * 174.58736 * 11 10 9 35 35 H 1.08998 * 109.49433 * 294.68449 * 11 10 9 36 36 H 1.08996 * 109.46500 * 58.65702 * 12 11 10 37 37 H 1.09001 * 109.45635 * 178.61477 * 12 11 10 38 38 H 0.97000 * 120.00162 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58785 * 353.41729 * 23 9 6 40 40 H 1.09004 * 109.58587 * 113.84836 * 23 9 6 41 41 H 1.07992 * 120.00035 * 179.97438 * 24 5 4 42 42 H 1.09006 * 109.47161 * 270.02070 * 26 25 2 43 43 H 1.09005 * 109.47159 * 30.01962 * 26 25 2 44 44 H 1.08997 * 109.47356 * 150.01997 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 -0.0010 6 16 6.0337 0.0001 -0.0010 7 8 6.4350 -1.2490 -0.5470 8 8 6.4350 1.2505 -0.5439 9 7 6.5239 -0.0019 1.5807 10 6 6.7455 -1.2670 2.2942 11 6 8.1545 -1.2538 2.8954 12 6 8.3226 -0.0048 3.7636 13 6 8.1550 1.2463 2.8983 14 1 8.8927 1.2354 2.0960 15 6 8.3535 2.4755 3.7474 16 1 7.5295 3.1522 3.9190 17 6 9.5872 2.7360 4.3053 18 7 10.6337 2.0239 3.9488 19 14 9.7720 4.1006 5.5676 20 1 9.6695 3.5282 6.9340 21 1 11.0962 4.7521 5.4019 22 1 8.6973 5.1062 5.3702 23 6 6.7514 1.2615 2.2955 24 6 3.5807 -1.1969 -0.0026 25 6 2.1981 -1.1969 -0.0019 26 6 1.4446 -2.5020 -0.0034 27 1 -0.3634 -0.0016 1.0276 28 1 -0.3633 0.8908 -0.5124 29 1 -0.3633 -0.8892 -0.5153 30 1 1.6582 2.1327 0.0007 31 1 4.1205 2.1327 0.0066 32 1 6.0092 -1.3709 3.0912 33 1 6.6532 -2.1004 1.5977 34 1 8.2973 -2.1443 3.5075 35 1 8.8922 -1.2412 2.0930 36 1 7.5688 -0.0055 4.5508 37 1 9.3160 -0.0055 4.2123 38 1 11.5015 2.2069 4.3416 39 1 6.6630 2.0959 1.5999 40 1 6.0156 1.3679 3.0926 41 1 4.1207 -2.1321 -0.0043 42 1 1.2630 -2.8179 1.0239 43 1 0.4921 -2.3710 -0.5170 44 1 2.0336 -3.2610 -0.5182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397665099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:11 Heat of formation + Delta-G solvation = -64.749284 kcal Electronic energy + Delta-G solvation = -25862.268658 eV Core-core repulsion = 22291.693444 eV Total energy + Delta-G solvation = -3570.575213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73201 -37.72335 -36.97548 -35.52124 -33.73027 -33.25961 -32.41565 -31.16264 -30.12258 -27.99381 -26.81093 -25.08416 -23.66386 -22.49005 -21.67076 -21.52343 -19.51673 -18.41024 -17.32698 -17.16824 -16.26356 -16.13481 -15.46519 -15.21140 -14.61098 -14.60361 -14.32539 -13.90452 -13.49516 -13.38195 -13.27113 -13.11571 -12.94877 -12.80333 -12.73364 -12.35017 -12.20175 -12.12903 -11.93390 -11.77396 -11.72798 -11.34525 -11.24216 -10.98952 -10.83155 -10.73806 -10.59896 -10.24658 -10.01490 -9.73676 -9.42255 -9.19858 -8.90899 -8.85182 -8.37979 -8.19474 -6.02733 -4.05262 0.55990 0.84393 1.16637 3.13919 3.30680 3.38409 3.40892 3.51084 4.06573 4.37900 4.44243 4.51346 4.65617 4.69579 4.91827 5.07664 5.17954 5.20285 5.24206 5.31018 5.36604 5.44654 5.51938 5.55041 5.67143 5.76996 5.80266 5.88675 5.99215 6.03871 6.08493 6.22033 6.31379 6.32676 6.46569 6.61740 6.62074 6.74198 6.86604 7.01379 7.19360 7.38650 7.70631 7.93602 8.00714 8.38931 8.98284 9.58029 11.06330 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.003630 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.500715 B = 7712.297291 C = 8235.043888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.039 4.039 3 C -0.139 4.139 4 C -0.020 4.020 5 C -0.674 4.674 6 S 2.685 3.315 7 O -0.966 6.966 8 O -0.954 6.954 9 N -0.989 5.989 10 C 0.124 3.876 11 C -0.132 4.132 12 C -0.103 4.103 13 C 0.039 3.961 14 H 0.039 0.961 15 C -0.518 4.518 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.125 3.875 24 C -0.018 4.018 25 C -0.113 4.113 26 C -0.117 4.117 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.261 0.739 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.138 0.862 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.906 -7.920 -5.975 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.040 4.040 3 C -0.158 4.158 4 C -0.039 4.039 5 C -0.759 4.759 6 S 2.776 3.224 7 O -0.956 6.956 8 O -0.944 6.944 9 N -0.829 5.829 10 C -0.002 4.002 11 C -0.171 4.171 12 C -0.141 4.141 13 C 0.019 3.981 14 H 0.058 0.942 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 C 0.001 3.999 24 C -0.037 4.037 25 C -0.114 4.114 26 C -0.173 4.173 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.155 0.845 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.218 -7.937 -6.694 20.969 hybrid contribution -0.479 0.798 1.107 1.446 sum -18.697 -7.139 -5.588 20.779 Atomic orbital electron populations 1.20977 0.90898 1.03275 1.02873 1.20051 0.96188 0.92829 0.94908 1.21149 0.94207 0.97773 1.02693 1.20951 0.94613 0.96845 0.91499 1.31300 1.28280 0.99223 1.17120 1.02132 0.73627 0.73502 0.73120 1.93527 1.81060 1.44253 1.76768 1.93574 1.80700 1.43597 1.76528 1.57614 1.80778 1.13613 1.30916 1.21429 0.98507 0.84043 0.96200 1.21946 0.95210 0.99790 1.00124 1.21518 1.02102 0.93151 0.97365 1.18887 0.90189 0.93721 0.95297 0.94243 1.21046 0.96103 1.07650 1.30878 0.92409 1.24932 0.95707 0.96279 0.96708 1.69973 0.99445 1.40871 1.41952 0.86632 0.77498 0.82187 0.81984 1.20770 1.21330 1.19842 1.21787 1.00903 0.81706 0.95511 1.20781 0.93846 0.96696 0.92398 1.19855 0.93703 0.95257 1.02580 1.20868 1.00049 0.93775 1.02639 0.90472 0.91150 0.90741 0.85165 0.84132 0.92115 0.90285 0.92427 0.92024 0.94320 0.90604 0.92963 0.90139 0.92573 0.84460 0.90905 0.91067 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.60 36.01 0.35 -0.51 16 2 C -0.04 -0.41 5.88 -104.62 -0.62 -1.03 16 3 C -0.14 -1.57 9.70 -39.58 -0.38 -1.96 16 4 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 5 C -0.67 -9.86 5.97 -39.58 -0.24 -10.10 16 6 S 2.69 46.88 5.73 -107.50 -0.62 46.26 16 7 O -0.97 -18.03 15.87 -57.17 -0.91 -18.94 16 8 O -0.95 -19.30 15.87 -57.17 -0.91 -20.21 16 9 N -0.99 -17.75 3.30 -113.76 -0.37 -18.13 16 10 C 0.12 2.00 6.48 -3.71 -0.02 1.98 16 11 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 12 C -0.10 -2.29 5.02 -26.69 -0.13 -2.42 16 13 C 0.04 0.95 2.10 -91.87 -0.19 0.76 16 14 H 0.04 1.09 8.09 -51.93 -0.42 0.67 16 15 C -0.52 -13.80 8.48 -34.44 -0.29 -14.09 16 16 H 0.06 1.50 7.77 -52.49 -0.41 1.09 16 17 C 0.07 1.80 5.19 -17.82 -0.09 1.70 16 18 N -0.88 -25.10 12.16 55.43 0.67 -24.43 16 19 Si 0.89 20.91 29.55 -169.99 -5.02 15.88 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.12 2.53 5.68 -3.93 -0.02 2.51 16 24 C -0.02 -0.23 9.18 -39.58 -0.36 -0.60 16 25 C -0.11 -1.24 5.88 -104.63 -0.62 -1.86 16 26 C -0.12 -0.90 9.60 36.00 0.35 -0.56 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.43 5.95 -51.93 -0.31 0.12 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.83 7.62 -52.48 -0.40 1.43 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.15 6.92 -51.93 -0.36 0.79 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.89 6.88 -51.93 -0.36 1.53 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.08 1.65 6.91 -51.93 -0.36 1.29 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.14 1.62 7.62 -52.49 -0.40 1.22 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.44 5.95 -51.93 -0.31 0.13 16 44 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -32.11 361.40 -11.20 -43.31 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.68 Total: 0.19 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: -2.82 Total: -29.39 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.30 Total: -42.55 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -1.81 Total: -39.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 46.88 SS G_CDS: -0.62 Total: 46.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.11 -11.20 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.434 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds