Wall clock time and date at job start Tue Mar 31 2020 14:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38262 * 119.99723 * 2 1 4 4 C 1.38211 * 119.99620 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00380 * 0.10096 * 4 3 2 6 6 S 1.76197 * 120.00150 * 179.97438 * 5 4 3 7 7 O 1.42103 * 106.40311 * 203.53456 * 6 5 4 8 8 O 1.42097 * 106.40328 * 336.45505 * 6 5 4 9 9 N 1.65599 * 107.21935 * 89.99660 * 6 5 4 10 10 C 1.46925 * 120.63110 * 89.99833 * 9 6 5 11 11 C 1.53193 * 108.77626 * 126.37028 * 10 9 6 12 12 C 1.53040 * 109.30992 * 54.63474 * 11 10 9 13 13 C 1.53038 * 109.54010 * 298.63138 * 12 11 10 14 14 H 1.08999 * 109.50003 * 301.41863 * 13 12 11 15 15 C 1.50702 * 109.49977 * 181.35088 * 13 12 11 16 16 H 1.08000 * 119.99992 * 245.45627 * 15 13 12 17 17 C 1.37877 * 119.99633 * 65.45198 * 15 13 12 18 18 N 1.31506 * 120.00348 * 9.58093 * 17 15 13 19 19 Si 1.86804 * 119.99647 * 189.58280 * 17 15 13 20 20 H 1.48501 * 109.47394 * 94.99049 * 19 17 15 21 21 H 1.48504 * 109.46891 * 214.99051 * 19 17 15 22 22 H 1.48501 * 109.46829 * 334.98729 * 19 17 15 23 23 C 1.46928 * 120.62896 * 269.72078 * 9 6 5 24 24 C 1.38210 * 119.99797 * 359.97438 * 5 4 3 25 25 C 1.38207 * 120.00104 * 180.09175 * 2 1 3 26 26 C 1.50697 * 120.00035 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.47354 * 269.90955 * 1 2 3 28 28 H 1.09001 * 109.47163 * 29.90733 * 1 2 3 29 29 H 1.09005 * 109.46910 * 149.90434 * 1 2 3 30 30 H 1.07999 * 120.00032 * 0.04450 * 3 2 1 31 31 H 1.08004 * 120.00274 * 180.36849 * 4 3 2 32 32 H 1.09007 * 109.58776 * 246.15800 * 10 9 6 33 33 H 1.09000 * 109.58787 * 6.58090 * 10 9 6 34 34 H 1.09002 * 109.50101 * 174.58736 * 11 10 9 35 35 H 1.08998 * 109.49433 * 294.68449 * 11 10 9 36 36 H 1.08996 * 109.46500 * 58.65702 * 12 11 10 37 37 H 1.09001 * 109.45635 * 178.61477 * 12 11 10 38 38 H 0.97000 * 120.00162 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58785 * 353.41729 * 23 9 6 40 40 H 1.09004 * 109.58587 * 113.84836 * 23 9 6 41 41 H 1.07992 * 120.00035 * 179.97438 * 24 5 4 42 42 H 1.09006 * 109.47161 * 270.02070 * 26 25 2 43 43 H 1.09005 * 109.47159 * 30.01962 * 26 25 2 44 44 H 1.08997 * 109.47356 * 150.01997 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 -0.0010 6 16 6.0337 0.0001 -0.0010 7 8 6.4350 -1.2490 -0.5470 8 8 6.4350 1.2505 -0.5439 9 7 6.5239 -0.0019 1.5807 10 6 6.7455 -1.2670 2.2942 11 6 8.1545 -1.2538 2.8954 12 6 8.3226 -0.0048 3.7636 13 6 8.1550 1.2463 2.8983 14 1 8.8927 1.2354 2.0960 15 6 8.3535 2.4755 3.7474 16 1 7.5295 3.1522 3.9190 17 6 9.5872 2.7360 4.3053 18 7 10.6337 2.0239 3.9488 19 14 9.7720 4.1006 5.5676 20 1 9.6695 3.5282 6.9340 21 1 11.0962 4.7521 5.4019 22 1 8.6973 5.1062 5.3702 23 6 6.7514 1.2615 2.2955 24 6 3.5807 -1.1969 -0.0026 25 6 2.1981 -1.1969 -0.0019 26 6 1.4446 -2.5020 -0.0034 27 1 -0.3634 -0.0016 1.0276 28 1 -0.3633 0.8908 -0.5124 29 1 -0.3633 -0.8892 -0.5153 30 1 1.6582 2.1327 0.0007 31 1 4.1205 2.1327 0.0066 32 1 6.0092 -1.3709 3.0912 33 1 6.6532 -2.1004 1.5977 34 1 8.2973 -2.1443 3.5075 35 1 8.8922 -1.2412 2.0930 36 1 7.5688 -0.0055 4.5508 37 1 9.3160 -0.0055 4.2123 38 1 11.5015 2.2069 4.3416 39 1 6.6630 2.0959 1.5999 40 1 6.0156 1.3679 3.0926 41 1 4.1207 -2.1321 -0.0043 42 1 1.2630 -2.8179 1.0239 43 1 0.4921 -2.3710 -0.5170 44 1 2.0336 -3.2610 -0.5182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397665099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:11 Heat of formation + Delta-G solvation = -84.272192 kcal Electronic energy + Delta-G solvation = -25863.115235 eV Core-core repulsion = 22291.693444 eV Total energy + Delta-G solvation = -3571.421790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59569 -39.33138 -38.44319 -36.99681 -35.17508 -34.55284 -33.21603 -32.80702 -31.90336 -28.71833 -27.56505 -27.02030 -25.24635 -23.45581 -23.23824 -22.46904 -21.18425 -19.73683 -18.86008 -18.45290 -18.06670 -17.31570 -16.65306 -16.36979 -16.33027 -15.40076 -15.34175 -15.23945 -15.13474 -14.85911 -14.46692 -14.34907 -14.22745 -13.85640 -13.62221 -13.60668 -13.32206 -13.23448 -13.13302 -13.05740 -12.91086 -12.82451 -12.68516 -12.62057 -12.54875 -12.04955 -11.92728 -11.79979 -11.68590 -11.53092 -11.11330 -10.76031 -10.42514 -10.10393 -9.80632 -9.73409 -8.10991 -6.20433 -0.70531 -0.21454 0.26773 1.43601 1.44522 1.54929 1.90902 2.45103 2.47255 2.75265 3.19480 3.19647 3.72576 3.81947 3.83666 3.88627 4.17782 4.22353 4.23919 4.32279 4.47184 4.55133 4.59125 4.65619 4.72099 4.77412 4.78436 4.84444 4.90832 4.91796 4.95488 5.06461 5.08057 5.14213 5.18851 5.24585 5.32578 5.35795 5.50103 5.52798 5.66057 5.70341 5.90324 5.97756 6.04972 6.36193 6.91813 7.46425 8.97925 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.003630 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.500715 B = 7712.297291 C = 8235.043888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.035 4.035 3 C -0.142 4.142 4 C -0.042 4.042 5 C -0.680 4.680 6 S 2.693 3.307 7 O -0.984 6.984 8 O -0.993 6.993 9 N -0.995 5.995 10 C 0.121 3.879 11 C -0.129 4.129 12 C -0.095 4.095 13 C 0.033 3.967 14 H -0.009 1.009 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.954 3.046 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.265 1.265 23 C 0.137 3.863 24 C -0.032 4.032 25 C -0.115 4.115 26 C -0.117 4.117 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.784 -8.831 -5.258 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.036 4.036 3 C -0.160 4.160 4 C -0.061 4.061 5 C -0.770 4.770 6 S 2.789 3.211 7 O -0.974 6.974 8 O -0.984 6.984 9 N -0.834 5.834 10 C -0.003 4.003 11 C -0.168 4.168 12 C -0.134 4.134 13 C 0.013 3.987 14 H 0.009 0.991 15 C -0.573 4.573 16 H 0.080 0.920 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.780 3.220 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.189 1.189 23 C 0.012 3.988 24 C -0.052 4.052 25 C -0.116 4.116 26 C -0.173 4.173 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.174 0.826 31 H 0.152 0.848 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.162 0.838 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.051 -8.858 -5.973 24.503 hybrid contribution 0.613 1.056 0.814 1.467 sum -21.439 -7.802 -5.159 23.390 Atomic orbital electron populations 1.21088 0.87956 1.04774 1.04105 1.20551 0.98300 0.92117 0.92598 1.21485 0.93211 0.99575 1.01757 1.21079 0.96002 0.96265 0.92788 1.30616 1.25281 1.00707 1.20388 1.01481 0.74815 0.72315 0.72500 1.93488 1.82368 1.44589 1.76996 1.93515 1.82372 1.45198 1.77313 1.57524 1.81735 1.13343 1.30791 1.21621 0.97531 0.83785 0.97386 1.21901 0.96403 0.99136 0.99326 1.21325 1.00333 0.94039 0.97667 1.18860 0.91388 0.94340 0.94160 0.99065 1.21468 0.96317 1.08534 1.30964 0.92006 1.25744 0.95465 0.98731 0.98533 1.70118 0.99830 1.42686 1.43167 0.85603 0.77331 0.79449 0.79619 1.19892 1.21533 1.18916 1.21438 0.98782 0.82754 0.95777 1.21010 0.95129 0.96183 0.92860 1.20275 0.93007 0.97162 1.01152 1.20971 1.00562 0.91989 1.03821 0.89106 0.89906 0.89113 0.82624 0.84781 0.89108 0.88299 0.89266 0.94300 0.93182 0.94122 0.93101 0.91147 0.90672 0.83778 0.89617 0.89026 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.60 71.24 0.68 -0.45 16 2 C -0.04 -0.61 5.88 -19.87 -0.12 -0.73 16 3 C -0.14 -2.86 9.70 22.27 0.22 -2.65 16 4 C -0.04 -1.11 9.52 22.27 0.21 -0.90 16 5 C -0.68 -19.57 5.97 22.27 0.13 -19.44 16 6 S 2.69 96.40 5.73 -56.49 -0.32 96.07 16 7 O -0.98 -37.29 15.87 -128.00 -2.03 -39.32 16 8 O -0.99 -42.42 15.87 -128.00 -2.03 -44.45 16 9 N -1.00 -36.03 3.30 -513.82 -1.69 -37.73 16 10 C 0.12 3.78 6.48 86.36 0.56 4.34 16 11 C -0.13 -4.72 6.08 30.67 0.19 -4.54 16 12 C -0.10 -4.33 5.02 30.62 0.15 -4.17 16 13 C 0.03 1.66 2.10 -11.60 -0.02 1.63 16 14 H -0.01 -0.53 8.09 -2.39 -0.02 -0.55 16 15 C -0.53 -29.24 8.48 25.60 0.22 -29.02 16 16 H 0.06 3.24 7.77 -2.91 -0.02 3.22 16 17 C 0.01 0.80 5.19 84.66 0.44 1.24 16 18 N -0.92 -54.32 12.16 21.45 0.26 -54.06 16 19 Si 0.95 43.55 29.55 68.60 2.03 45.58 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 23 C 0.14 5.70 5.68 86.22 0.49 6.19 16 24 C -0.03 -0.79 9.18 22.27 0.20 -0.58 16 25 C -0.11 -2.17 5.88 -19.87 -0.12 -2.29 16 26 C -0.12 -1.35 9.60 71.23 0.68 -0.66 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 29 H 0.09 0.57 5.95 -2.38 -0.01 0.56 16 30 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.13 3.60 7.62 -2.91 -0.02 3.58 16 32 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.10 2.72 6.92 -2.39 -0.02 2.70 16 34 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.04 2.10 6.88 -2.39 -0.02 2.09 16 38 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.07 3.02 6.91 -2.39 -0.02 3.01 16 40 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 41 H 0.14 3.17 7.62 -2.91 -0.02 3.15 16 42 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.09 0.69 5.95 -2.38 -0.01 0.67 16 44 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 Total: -1.00 -73.02 361.40 1.12 -71.90 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.99 Total: 14.04 kcal Atomic # 6 Polarization: -55.95 SS G_CDS: 3.92 Total: -52.03 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -1.43 Total: -91.79 kcal Atomic # 8 Polarization: -79.71 SS G_CDS: -4.06 Total: -83.77 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 96.40 SS G_CDS: -0.32 Total: 96.07 kcal Total: -73.02 1.12 -71.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.369 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds