Wall clock time and date at job start Tue Mar 31 2020 14:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47194 * 64.99925 * 9 8 7 11 11 C 1.34773 * 120.00133 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99917 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00143 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.46994 * 324.99512 * 13 11 10 15 15 C 1.52993 * 109.47219 * 84.99960 * 13 11 10 16 16 S 1.81396 * 109.46992 * 205.00269 * 13 11 10 17 17 C 1.81402 * 102.99892 * 174.99759 * 16 13 11 18 18 C 1.50705 * 109.47079 * 179.97438 * 17 16 13 19 19 H 1.07997 * 119.99769 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99881 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99799 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99940 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47093 * 89.99671 * 22 20 18 24 24 H 1.48499 * 109.46853 * 209.99665 * 22 20 18 25 25 H 1.48501 * 109.47088 * 329.99724 * 22 20 18 26 26 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 30 30 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 32 32 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 33 33 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 34 34 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 35 35 H 1.08994 * 109.47282 * 185.00561 * 9 8 7 36 36 H 1.09005 * 109.47031 * 305.00153 * 9 8 7 37 37 H 0.97000 * 119.99757 * 0.02562 * 10 9 8 38 38 H 1.09001 * 109.46703 * 180.02562 * 15 13 11 39 39 H 1.09004 * 109.47032 * 299.99469 * 15 13 11 40 40 H 1.08996 * 109.47296 * 59.99938 * 15 13 11 41 41 H 1.08995 * 109.46798 * 299.99648 * 17 16 13 42 42 H 1.08999 * 109.46904 * 59.99746 * 17 16 13 43 43 H 0.97008 * 119.99728 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.03255 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 7 5.9277 -4.3768 -1.2736 11 6 6.3394 -5.6395 -1.5027 12 8 7.0016 -6.2218 -0.6701 13 6 5.9779 -6.3274 -2.7939 14 1 4.9836 -6.0103 -3.1085 15 6 6.9971 -5.9554 -3.8726 16 16 5.9890 -8.1242 -2.5454 17 6 5.3907 -8.7597 -4.1357 18 6 5.3427 -10.2653 -4.0889 19 1 5.6425 -10.7875 -3.1924 20 6 4.9170 -10.9759 -5.1911 21 7 4.5524 -10.3399 -6.2829 22 14 4.8582 -12.8422 -5.1334 23 1 3.5259 -13.2806 -4.6457 24 1 5.0907 -13.3870 -6.4952 25 1 5.9113 -13.3424 -4.2136 26 6 2.1970 -1.1966 -0.0058 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 1.6565 2.1324 -0.0004 31 1 4.1176 2.1381 0.0098 32 1 5.3552 0.0102 0.0002 33 1 6.0278 -1.7576 -0.8990 34 1 6.0280 -1.7669 0.8810 35 1 7.3644 -3.6512 0.0712 36 1 5.8747 -4.2735 0.8205 37 1 5.3984 -3.9108 -1.9397 38 1 6.7353 -6.4526 -4.8066 39 1 6.9903 -4.8756 -4.0220 40 1 7.9913 -6.2725 -3.5580 41 1 4.3916 -8.3698 -4.3300 42 1 6.0655 -8.4425 -4.9307 43 1 4.2526 -10.8399 -7.0582 44 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:05 Heat of formation + Delta-G solvation = -86.809060 kcal Electronic energy + Delta-G solvation = -23465.133506 eV Core-core repulsion = 19893.601709 eV Total energy + Delta-G solvation = -3571.531797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26873 -40.70788 -38.72707 -35.97206 -35.30668 -34.29850 -33.38991 -31.65264 -30.63740 -29.96775 -27.85924 -25.89532 -25.23433 -24.03567 -23.47112 -21.79335 -21.70682 -18.91824 -18.84203 -18.20896 -17.90541 -17.08944 -17.02265 -16.80522 -16.52325 -16.31949 -15.91640 -15.29059 -15.10774 -14.92830 -14.61103 -14.48765 -14.35818 -14.21185 -14.13864 -14.08466 -13.50158 -13.26248 -13.08125 -12.95406 -12.94085 -12.71582 -12.67040 -12.54597 -12.40725 -11.88656 -11.82502 -11.71258 -11.58892 -10.98461 -10.74107 -10.57974 -10.22676 -9.72961 -9.14125 -8.51135 -8.33640 -6.45842 0.37660 0.50168 0.69743 1.39808 1.40927 1.52213 1.55666 1.96337 2.07078 2.19093 2.37110 2.81284 3.00946 3.60266 3.69847 3.85814 3.91232 3.98016 4.00990 4.04706 4.17804 4.29684 4.33674 4.43763 4.55326 4.59408 4.60609 4.68345 4.77004 4.81874 4.88793 4.94218 4.94719 5.02769 5.12865 5.24162 5.29411 5.37137 5.51010 5.57210 5.67565 5.87388 5.89934 6.35799 6.45082 6.60533 7.09156 7.21538 8.78249 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.002091 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.117065 B =13385.852043 C =14398.903477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.056 4.056 3 C -0.168 4.168 4 C -0.080 4.080 5 C -0.221 4.221 6 C 0.118 3.882 7 O -0.332 6.332 8 C 0.052 3.948 9 C 0.122 3.878 10 N -0.709 5.709 11 C 0.542 3.458 12 O -0.560 6.560 13 C -0.085 4.085 14 H 0.114 0.886 15 C -0.131 4.131 16 S -0.278 6.278 17 C 0.091 3.909 18 C -0.538 4.538 19 H 0.057 0.943 20 C 0.017 3.983 21 N -0.921 5.921 22 Si 0.975 3.025 23 H -0.269 1.269 24 H -0.273 1.273 25 H -0.269 1.269 26 C -0.178 4.178 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.415 0.585 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.024 0.976 43 H 0.271 0.729 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 29.012 11.000 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.186 4.186 4 C -0.098 4.098 5 C -0.239 4.239 6 C 0.073 3.927 7 O -0.247 6.247 8 C -0.023 4.023 9 C -0.001 4.001 10 N -0.363 5.363 11 C 0.327 3.673 12 O -0.438 6.438 13 C -0.217 4.217 14 H 0.132 0.868 15 C -0.190 4.190 16 S -0.051 6.051 17 C -0.056 4.056 18 C -0.577 4.577 19 H 0.075 0.925 20 C -0.184 4.184 21 N -0.560 5.560 22 Si 0.798 3.202 23 H -0.194 1.194 24 H -0.198 1.198 25 H -0.193 1.193 26 C -0.197 4.197 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.180 27.843 12.346 30.536 hybrid contribution -0.617 -0.249 -1.537 1.675 sum -2.797 27.595 10.809 29.768 Atomic orbital electron populations 1.20874 0.89441 1.03708 1.03255 1.20025 0.97264 0.92141 0.96230 1.21284 0.94676 0.98060 1.04563 1.21296 0.94358 0.98229 0.95944 1.21503 1.01333 0.91826 1.09287 1.19166 0.91896 0.85050 0.96613 1.86108 1.20919 1.28815 1.88834 1.23203 0.77772 0.96554 1.04724 1.21535 1.00955 0.91407 0.86215 1.45738 1.55748 1.13560 1.21257 1.19762 0.78852 0.81930 0.86802 1.90703 1.40075 1.65695 1.47339 1.23228 1.05005 0.95515 0.97952 0.86795 1.21890 0.97454 1.03404 0.96203 1.87132 1.88373 1.02493 1.27115 1.20816 0.96913 0.98512 0.89405 1.20956 1.46088 0.90595 1.00055 0.92467 1.25856 0.93916 1.04305 0.94315 1.70040 1.44000 1.38001 1.03964 0.85303 0.78966 0.78050 0.77888 1.19415 1.19757 1.19312 1.20513 0.91503 0.99164 1.08482 0.90125 0.89897 0.91406 0.84009 0.83349 0.83514 0.89006 0.87946 0.87896 0.91874 0.74802 0.92085 0.88169 0.92002 0.96526 0.95737 0.92014 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.01 71.24 0.71 -0.53 16 2 C -0.06 -0.86 5.88 -19.88 -0.12 -0.98 16 3 C -0.17 -2.14 9.70 22.28 0.22 -1.93 16 4 C -0.08 -0.96 10.04 22.25 0.22 -0.73 16 5 C -0.22 -3.01 9.04 22.36 0.20 -2.81 16 6 C 0.12 2.14 6.69 22.51 0.15 2.29 16 7 O -0.33 -6.24 10.08 -92.52 -0.93 -7.18 16 8 C 0.05 0.64 4.87 71.98 0.35 0.99 16 9 C 0.12 2.17 6.06 86.38 0.52 2.69 16 10 N -0.71 -15.66 5.50 -463.07 -2.55 -18.21 16 11 C 0.54 17.44 6.95 87.66 0.61 18.05 16 12 O -0.56 -22.73 16.14 -3.03 -0.05 -22.78 16 13 C -0.09 -2.93 3.17 29.85 0.09 -2.83 16 14 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 15 C -0.13 -3.87 9.08 71.98 0.65 -3.21 16 16 S -0.28 -13.17 20.38 -56.49 -1.15 -14.32 16 17 C 0.09 4.91 5.39 71.24 0.38 5.30 16 18 C -0.54 -31.60 9.13 25.60 0.23 -31.37 16 19 H 0.06 3.40 7.71 -2.91 -0.02 3.38 16 20 C 0.02 0.98 5.46 84.65 0.46 1.44 16 21 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 22 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C -0.18 -3.35 9.64 22.37 0.22 -3.13 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 29 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.15 1.28 6.30 -2.91 -0.02 1.26 16 33 H 0.09 0.76 7.66 -2.39 -0.02 0.74 16 34 H 0.10 0.82 7.66 -2.38 -0.02 0.80 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.42 7.21 8.47 -92.71 -0.79 6.43 16 38 H 0.06 2.01 6.92 -2.39 -0.02 1.99 16 39 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.02 1.35 7.14 -2.39 -0.02 1.34 16 43 H 0.27 14.80 8.31 -92.70 -0.77 14.02 16 44 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -75.17 384.88 2.76 -72.42 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.21 Total: 14.12 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 4.92 Total: -16.77 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -2.26 Total: -72.05 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.98 Total: -29.96 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: -13.17 SS G_CDS: -1.15 Total: -14.32 kcal Total: -75.17 2.76 -72.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.391 kcal (2) G-P(sol) polarization free energy of solvation -75.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds