Wall clock time and date at job start Tue Mar 31 2020 14:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47298 * 180.02562 * 10 9 8 12 12 C 1.34777 * 120.00270 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99769 * 0.02562 * 12 11 10 14 14 C 1.50691 * 120.00000 * 179.97438 * 12 11 10 15 15 S 1.81404 * 109.47167 * 180.02562 * 14 12 11 16 16 C 1.81398 * 103.00261 * 179.97438 * 15 14 12 17 17 C 1.50692 * 109.47383 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99763 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00251 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00222 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00359 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46911 * 59.99918 * 21 19 17 23 23 H 1.48496 * 109.47277 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46807 * 300.00403 * 21 19 17 25 25 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 26 26 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 29 29 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 31 31 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 32 32 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 33 33 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 34 34 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 35 35 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 36 36 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 37 37 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 38 38 H 0.97001 * 119.99560 * 359.97438 * 11 10 9 39 39 H 1.09000 * 109.47602 * 299.99839 * 14 12 11 40 40 H 1.09000 * 109.47596 * 60.00218 * 14 12 11 41 41 H 1.08997 * 109.47083 * 300.00097 * 16 15 14 42 42 H 1.09003 * 109.46980 * 59.99725 * 16 15 14 43 43 H 0.96999 * 120.00505 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.03255 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 7 8.3693 -4.9785 -0.0249 12 6 9.7057 -5.1532 -0.0260 13 8 10.4431 -4.1903 -0.0205 14 6 10.2837 -6.5448 -0.0327 15 16 12.0951 -6.4473 -0.0318 16 6 12.5977 -8.1902 -0.0396 17 6 14.1019 -8.2793 -0.0402 18 1 14.6963 -7.3776 -0.0359 19 6 14.7196 -9.5120 -0.0452 20 7 13.9959 -10.6102 -0.0499 21 14 16.5844 -9.6225 -0.0453 22 1 17.1196 -8.9580 1.1701 23 1 16.9957 -11.0493 -0.0517 24 1 17.1201 -8.9478 -1.2548 25 6 2.1970 -1.1966 -0.0058 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3634 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 1.6565 2.1324 -0.0004 30 1 4.1176 2.1381 0.0098 31 1 5.3552 0.0102 0.0002 32 1 6.0278 -1.7576 -0.8990 33 1 6.0280 -1.7669 0.8810 34 1 5.9445 -4.2448 0.8688 35 1 5.9443 -4.2363 -0.9111 36 1 8.1428 -3.0886 -0.9050 37 1 8.1423 -3.0974 0.8749 38 1 7.7795 -5.7486 -0.0289 39 1 9.9487 -7.0818 0.8547 40 1 9.9484 -7.0732 -0.9252 41 1 12.2044 -8.6857 0.8481 42 1 12.2048 -8.6777 -0.9319 43 1 14.4304 -11.4774 -0.0530 44 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:55 Heat of formation + Delta-G solvation = -69.498332 kcal Electronic energy + Delta-G solvation = -22415.598537 eV Core-core repulsion = 18844.817389 eV Total energy + Delta-G solvation = -3570.781148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59249 -39.51170 -38.20310 -35.65230 -33.13458 -32.97386 -32.60216 -30.53922 -29.47117 -28.47318 -27.46988 -25.77908 -23.11978 -23.02175 -22.33124 -21.35530 -20.48738 -18.24827 -16.99215 -16.85611 -16.77348 -16.42708 -16.27074 -15.94384 -15.62839 -15.04537 -14.67215 -14.59425 -14.34921 -14.02179 -13.86066 -13.64166 -13.49828 -12.98487 -12.63052 -12.58180 -12.47043 -12.41782 -12.23158 -12.02359 -11.94407 -11.90522 -11.68853 -11.19681 -11.07667 -10.83713 -10.73304 -10.02710 -9.83166 -9.56705 -9.22174 -9.19710 -8.77172 -8.60043 -8.59789 -6.64405 -6.18642 -4.22479 0.88633 1.03466 2.28608 2.65162 2.74521 3.30231 3.32457 3.32779 3.33218 3.38021 3.85291 4.32906 4.36412 4.37158 4.38902 4.49643 4.57904 4.63266 4.80601 4.88753 4.92447 4.99548 4.99804 5.05143 5.14195 5.18741 5.25312 5.31133 5.38140 5.45275 5.59446 5.61284 5.65005 5.69487 5.89366 6.01489 6.16013 6.28626 6.35656 6.99882 7.08581 7.09537 7.38684 7.76401 8.02371 8.26343 8.79432 9.40587 10.92837 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.059113 B = 0.001370 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.556284 B =20435.246516 C =20867.147602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.162 4.162 4 C -0.076 4.076 5 C -0.215 4.215 6 C 0.136 3.864 7 O -0.315 6.315 8 C 0.063 3.937 9 C -0.131 4.131 10 C 0.125 3.875 11 N -0.735 5.735 12 C 0.533 3.467 13 O -0.514 6.514 14 C -0.131 4.131 15 S -0.236 6.236 16 C 0.074 3.926 17 C -0.511 4.511 18 H 0.067 0.933 19 C 0.066 3.934 20 N -0.894 5.894 21 Si 0.907 3.093 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.156 4.156 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.402 0.598 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.266 0.734 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.530 19.438 0.112 34.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.180 4.180 4 C -0.094 4.094 5 C -0.234 4.234 6 C 0.091 3.909 7 O -0.228 6.228 8 C -0.012 4.012 9 C -0.169 4.169 10 C 0.001 3.999 11 N -0.390 5.390 12 C 0.318 3.682 13 O -0.388 6.388 14 C -0.282 4.282 15 S -0.010 6.010 16 C -0.073 4.073 17 C -0.551 4.551 18 H 0.086 0.914 19 C -0.138 4.138 20 N -0.532 5.532 21 Si 0.734 3.266 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.174 4.174 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.236 0.764 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.411 20.657 0.116 34.323 hybrid contribution 0.017 -1.586 0.000 1.586 sum -27.394 19.071 0.116 33.378 Atomic orbital electron populations 1.20823 0.90691 1.03063 1.02650 1.19722 0.96103 0.92262 0.96788 1.20965 0.94197 0.97595 1.05221 1.20957 0.94187 0.97497 0.96732 1.21298 1.00473 0.92275 1.09340 1.18974 0.91708 0.84622 0.95624 1.86034 1.20081 1.28237 1.88484 1.22666 0.78121 0.98307 1.02140 1.21687 0.94322 0.96160 1.04688 1.21084 0.91117 0.84758 1.02950 1.45860 1.06922 1.08524 1.77707 1.20019 0.81614 0.90935 0.75591 1.90732 1.58763 1.41945 1.47325 1.23356 1.01677 0.97001 1.06176 1.87250 0.97006 1.18799 1.97982 1.21163 1.00246 0.85796 1.00060 1.20611 0.89215 0.92949 1.52279 0.91445 1.24952 0.99096 0.95126 0.94607 1.69943 1.35842 0.97724 1.49736 0.86400 0.84167 0.77000 0.79030 1.19870 1.21076 1.19871 1.20309 0.90892 0.98703 1.07517 0.90812 0.91244 0.91258 0.85940 0.85690 0.85338 0.91421 0.91430 0.89893 0.89886 0.91125 0.91119 0.76413 0.88024 0.88024 0.94632 0.94632 0.92479 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.01 36.01 0.36 -0.16 16 2 C -0.05 -0.34 5.88 -104.64 -0.62 -0.96 16 3 C -0.16 -1.10 9.70 -39.56 -0.38 -1.48 16 4 C -0.08 -0.53 10.04 -39.61 -0.40 -0.93 16 5 C -0.22 -1.71 9.04 -39.44 -0.36 -2.06 16 6 C 0.14 1.22 6.69 -39.22 -0.26 0.96 16 7 O -0.31 -2.85 10.14 -19.45 -0.20 -3.05 16 8 C 0.06 0.44 4.74 37.15 0.18 0.62 16 9 C -0.13 -0.86 5.70 -26.74 -0.15 -1.02 16 10 C 0.13 1.13 5.67 -4.04 -0.02 1.10 16 11 N -0.74 -7.82 5.56 -60.30 -0.34 -8.16 16 12 C 0.53 8.33 7.85 -10.99 -0.09 8.24 16 13 O -0.51 -10.19 15.86 5.56 0.09 -10.10 16 14 C -0.13 -2.15 6.42 36.00 0.23 -1.92 16 15 S -0.24 -5.37 20.79 -107.50 -2.24 -7.60 16 16 C 0.07 1.93 5.70 36.00 0.21 2.14 16 17 C -0.51 -14.57 9.13 -34.45 -0.31 -14.89 16 18 H 0.07 1.93 7.71 -52.49 -0.40 1.53 16 19 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 20 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 21 Si 0.91 21.52 29.54 -169.99 -5.02 16.49 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.16 -1.28 9.64 -39.43 -0.38 -1.66 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 28 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 29 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 30 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 31 H 0.13 0.84 6.30 -52.48 -0.33 0.51 16 32 H 0.07 0.42 7.66 -51.93 -0.40 0.02 16 33 H 0.07 0.42 7.66 -51.92 -0.40 0.02 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 3.08 8.47 -40.82 -0.35 2.73 16 39 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 40 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -34.08 387.89 -10.14 -44.21 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.92 Total: -2.18 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.10 Total: -10.26 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.40 Total: -33.36 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.11 Total: -13.15 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.24 Total: -7.60 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.08 -10.14 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.284 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds