Wall clock time and date at job start Tue Mar 31 2020 14:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47298 * 180.02562 * 10 9 8 12 12 C 1.34777 * 120.00270 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99769 * 0.02562 * 12 11 10 14 14 C 1.50691 * 120.00000 * 179.97438 * 12 11 10 15 15 S 1.81404 * 109.47167 * 180.02562 * 14 12 11 16 16 C 1.81398 * 103.00261 * 179.97438 * 15 14 12 17 17 C 1.50692 * 109.47383 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99763 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00251 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00222 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00359 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46911 * 59.99918 * 21 19 17 23 23 H 1.48496 * 109.47277 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46807 * 300.00403 * 21 19 17 25 25 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 26 26 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 29 29 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 31 31 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 32 32 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 33 33 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 34 34 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 35 35 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 36 36 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 37 37 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 38 38 H 0.97001 * 119.99560 * 359.97438 * 11 10 9 39 39 H 1.09000 * 109.47602 * 299.99839 * 14 12 11 40 40 H 1.09000 * 109.47596 * 60.00218 * 14 12 11 41 41 H 1.08997 * 109.47083 * 300.00097 * 16 15 14 42 42 H 1.09003 * 109.46980 * 59.99725 * 16 15 14 43 43 H 0.96999 * 120.00505 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.03255 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 7 8.3693 -4.9785 -0.0249 12 6 9.7057 -5.1532 -0.0260 13 8 10.4431 -4.1903 -0.0205 14 6 10.2837 -6.5448 -0.0327 15 16 12.0951 -6.4473 -0.0318 16 6 12.5977 -8.1902 -0.0396 17 6 14.1019 -8.2793 -0.0402 18 1 14.6963 -7.3776 -0.0359 19 6 14.7196 -9.5120 -0.0452 20 7 13.9959 -10.6102 -0.0499 21 14 16.5844 -9.6225 -0.0453 22 1 17.1196 -8.9580 1.1701 23 1 16.9957 -11.0493 -0.0517 24 1 17.1201 -8.9478 -1.2548 25 6 2.1970 -1.1966 -0.0058 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3634 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 1.6565 2.1324 -0.0004 30 1 4.1176 2.1381 0.0098 31 1 5.3552 0.0102 0.0002 32 1 6.0278 -1.7576 -0.8990 33 1 6.0280 -1.7669 0.8810 34 1 5.9445 -4.2448 0.8688 35 1 5.9443 -4.2363 -0.9111 36 1 8.1428 -3.0886 -0.9050 37 1 8.1423 -3.0974 0.8749 38 1 7.7795 -5.7486 -0.0289 39 1 9.9487 -7.0818 0.8547 40 1 9.9484 -7.0732 -0.9252 41 1 12.2044 -8.6857 0.8481 42 1 12.2048 -8.6777 -0.9319 43 1 14.4304 -11.4774 -0.0530 44 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:54 Heat of formation + Delta-G solvation = -90.036388 kcal Electronic energy + Delta-G solvation = -22416.489134 eV Core-core repulsion = 18844.817389 eV Total energy + Delta-G solvation = -3571.671744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16488 -40.69324 -38.76812 -36.59335 -35.27789 -33.56786 -33.35576 -31.36407 -30.68370 -30.35764 -27.92816 -26.53859 -25.18175 -23.58907 -22.99307 -22.07257 -21.47017 -18.90343 -18.66368 -18.01236 -17.60853 -17.48738 -17.07434 -16.84599 -16.68943 -16.62289 -16.02897 -15.44693 -15.18895 -14.80138 -14.58977 -14.55665 -14.41141 -14.35868 -14.17727 -14.06514 -13.60340 -13.15597 -13.14634 -12.97012 -12.71310 -12.58578 -12.56134 -12.40618 -12.37857 -12.03605 -11.71819 -11.61959 -11.61025 -11.11478 -10.73087 -10.63432 -10.20728 -9.75028 -9.16433 -8.47916 -8.32749 -6.45130 0.35078 0.47626 0.76295 1.41170 1.44014 1.50115 1.52781 1.88361 2.00666 2.37661 2.41226 2.78649 3.02184 3.68950 3.84031 3.84228 3.88153 3.96792 4.04320 4.10612 4.16454 4.30967 4.32862 4.35981 4.39964 4.46283 4.53244 4.62007 4.83509 4.86094 4.95208 4.97035 4.99134 4.99618 5.06904 5.23968 5.33321 5.35557 5.49316 5.57978 5.65270 5.85575 5.90712 6.40885 6.42618 6.61358 7.13330 7.22609 8.79011 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.059113 B = 0.001370 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.556284 B =20435.246516 C =20867.147602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C -0.169 4.169 4 C -0.083 4.083 5 C -0.228 4.228 6 C 0.116 3.884 7 O -0.328 6.328 8 C 0.061 3.939 9 C -0.116 4.116 10 C 0.126 3.874 11 N -0.711 5.711 12 C 0.535 3.465 13 O -0.562 6.562 14 C -0.117 4.117 15 S -0.276 6.276 16 C 0.084 3.916 17 C -0.540 4.540 18 H 0.058 0.942 19 C 0.019 3.981 20 N -0.922 5.922 21 Si 0.974 3.026 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.268 1.268 25 C -0.174 4.174 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.420 0.580 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.271 0.729 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.776 20.094 0.113 35.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.187 4.187 4 C -0.101 4.101 5 C -0.246 4.246 6 C 0.071 3.929 7 O -0.243 6.243 8 C -0.015 4.015 9 C -0.154 4.154 10 C 0.002 3.998 11 N -0.365 5.365 12 C 0.321 3.679 13 O -0.440 6.440 14 C -0.268 4.268 15 S -0.050 6.050 16 C -0.063 4.063 17 C -0.579 4.579 18 H 0.076 0.924 19 C -0.182 4.182 20 N -0.561 5.561 21 Si 0.797 3.203 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.193 1.193 25 C -0.193 4.193 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.257 0.743 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -28.715 21.297 0.117 35.751 hybrid contribution 0.225 -1.718 0.001 1.732 sum -28.490 19.579 0.118 34.569 Atomic orbital electron populations 1.20874 0.88979 1.03889 1.03372 1.20062 0.97476 0.91977 0.95955 1.21298 0.94384 0.98403 1.04582 1.21277 0.94637 0.98019 0.96150 1.21496 1.01103 0.92375 1.09644 1.19211 0.92166 0.84919 0.96593 1.85990 1.20864 1.28650 1.88760 1.22727 0.77471 0.98539 1.02741 1.21529 0.92223 0.96250 1.05421 1.21164 0.92575 0.83465 1.02625 1.45647 1.05367 1.10203 1.75308 1.19837 0.82897 0.89741 0.75460 1.90723 1.60227 1.42994 1.50096 1.23389 0.96275 0.98525 1.08566 1.87257 1.03489 1.16125 1.98122 1.20830 0.99280 0.87737 0.98447 1.20939 0.90702 0.93096 1.53125 0.92372 1.25839 1.04061 0.94603 0.93729 1.70030 1.37850 0.98271 1.49957 0.85370 0.78166 0.77538 0.79234 1.19289 1.19850 1.19297 1.20539 0.90989 0.99475 1.08273 0.90031 0.90027 0.90864 0.83941 0.83805 0.84481 0.90884 0.90890 0.89152 0.89147 0.91525 0.91515 0.74288 0.85646 0.85641 0.96101 0.96103 0.92022 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 71.24 0.71 -0.14 16 2 C -0.05 -0.71 5.88 -19.88 -0.12 -0.83 16 3 C -0.17 -2.05 9.70 22.28 0.22 -1.84 16 4 C -0.08 -1.07 10.04 22.25 0.22 -0.85 16 5 C -0.23 -3.46 9.04 22.36 0.20 -3.26 16 6 C 0.12 2.04 6.69 22.51 0.15 2.20 16 7 O -0.33 -5.73 10.14 -92.52 -0.94 -6.67 16 8 C 0.06 0.77 4.74 71.98 0.34 1.11 16 9 C -0.12 -1.31 5.70 30.59 0.17 -1.14 16 10 C 0.13 2.05 5.67 86.38 0.49 2.54 16 11 N -0.71 -13.56 5.56 -463.08 -2.57 -16.13 16 12 C 0.54 16.01 7.85 87.65 0.69 16.69 16 13 O -0.56 -22.17 15.86 -3.03 -0.05 -22.22 16 14 C -0.12 -3.66 6.42 71.23 0.46 -3.20 16 15 S -0.28 -12.66 20.79 -56.49 -1.17 -13.83 16 16 C 0.08 4.49 5.70 71.23 0.41 4.89 16 17 C -0.54 -31.32 9.13 25.60 0.23 -31.09 16 18 H 0.06 3.41 7.71 -2.91 -0.02 3.38 16 19 C 0.02 1.06 5.46 84.65 0.46 1.52 16 20 N -0.92 -53.76 13.29 21.45 0.28 -53.47 16 21 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 C -0.17 -2.82 9.64 22.37 0.22 -2.60 16 26 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 28 H 0.07 0.49 8.08 -2.39 -0.02 0.47 16 29 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.14 1.69 6.30 -2.91 -0.02 1.68 16 32 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 33 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.42 5.14 8.47 -92.71 -0.79 4.35 16 39 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -74.63 387.89 2.64 -71.99 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.20 Total: 10.30 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 4.86 Total: -15.99 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -2.29 Total: -69.60 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.99 Total: -28.89 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -12.66 SS G_CDS: -1.17 Total: -13.83 kcal Total: -74.63 2.64 -71.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.043 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds