Wall clock time and date at job start Tue Mar 31 2020 13:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 120.00022 * 2 1 4 4 C 1.38211 * 120.00034 * 180.27159 * 3 2 1 5 5 C 1.38261 * 119.99895 * 359.75523 * 4 3 2 6 6 C 1.38211 * 119.99788 * 359.96907 * 5 4 3 7 7 C 1.38214 * 120.00256 * 179.74865 * 2 1 3 8 8 C 1.50696 * 119.99666 * 0.02562 * 7 2 1 9 9 C 1.53004 * 109.47420 * 84.72637 * 8 7 2 10 10 N 1.46494 * 109.47255 * 179.97438 * 9 8 7 11 11 S 1.65598 * 120.00131 * 164.99952 * 10 9 8 12 12 O 1.42100 * 104.27506 * 308.93096 * 11 10 9 13 13 O 1.42100 * 104.27809 * 181.07098 * 11 10 9 14 14 C 1.81403 * 104.44862 * 64.99974 * 11 10 9 15 15 C 1.53002 * 109.46891 * 181.99457 * 14 11 10 16 16 C 1.50698 * 115.55492 * 294.71903 * 15 14 11 17 17 H 1.07999 * 119.99841 * 95.18621 * 16 15 14 18 18 C 1.37877 * 119.99491 * 274.91366 * 16 15 14 19 19 N 1.31511 * 120.00240 * 6.47682 * 18 16 15 20 20 Si 1.86803 * 119.99653 * 186.47170 * 18 16 15 21 21 H 1.48500 * 109.46975 * 90.00093 * 20 18 16 22 22 H 1.48496 * 109.47095 * 210.00185 * 20 18 16 23 23 H 1.48505 * 109.47192 * 330.00237 * 20 18 16 24 24 C 1.53004 * 117.49346 * 80.38919 * 15 14 11 25 25 C 1.53005 * 117.49404 * 149.04497 * 15 14 11 26 26 H 1.09003 * 109.47095 * 270.25166 * 1 2 3 27 27 H 1.09001 * 109.47377 * 30.24894 * 1 2 3 28 28 H 1.08997 * 109.47402 * 150.24960 * 1 2 3 29 29 H 1.08002 * 119.99976 * 0.04935 * 3 2 1 30 30 H 1.07994 * 119.99807 * 179.76931 * 4 3 2 31 31 H 1.07994 * 119.99831 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.99715 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47483 * 324.72162 * 8 7 2 34 34 H 1.09008 * 109.46883 * 204.72684 * 8 7 2 35 35 H 1.09003 * 109.46914 * 59.99817 * 9 8 7 36 36 H 1.09000 * 109.46540 * 299.99813 * 9 8 7 37 37 H 0.97003 * 120.00348 * 345.00370 * 10 9 8 38 38 H 1.08998 * 109.47076 * 61.99764 * 14 11 10 39 39 H 1.08999 * 109.47201 * 301.99827 * 14 11 10 40 40 H 0.97003 * 119.99981 * 185.08493 * 19 18 16 41 41 H 1.09003 * 117.49911 * 214.99518 * 24 15 14 42 42 H 1.08994 * 117.50007 * 0.02562 * 24 15 14 43 43 H 1.09002 * 117.49894 * 359.97438 * 25 15 14 44 44 H 1.08995 * 117.49405 * 144.97694 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0053 8 6 1.4446 -2.5020 0.0104 9 6 1.0753 -2.8834 -1.4246 10 7 0.3433 -4.1524 -1.4196 11 16 -0.5005 -4.6268 -2.7631 12 8 -1.3049 -3.5012 -3.0873 13 8 -1.0893 -5.8645 -2.3882 14 6 0.7726 -4.8852 -4.0293 15 6 0.1068 -5.2835 -5.3481 16 6 -0.6095 -6.6093 -5.3402 17 1 -1.6721 -6.6479 -5.1508 18 6 0.0907 -7.7725 -5.5804 19 7 1.4009 -7.7406 -5.6897 20 14 -0.8216 -9.3937 -5.7502 21 1 -1.1837 -9.6110 -7.1739 22 1 0.0497 -10.5030 -5.2861 23 1 -2.0562 -9.3557 -4.9257 24 6 -0.4878 -4.1643 -6.2054 25 6 0.8012 -4.8632 -6.6451 26 1 -0.3633 0.0045 1.0277 27 1 -0.3634 0.8877 -0.5177 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6583 2.1327 0.0008 30 1 4.1203 2.1327 -0.0094 31 1 5.3516 0.0001 -0.0111 32 1 4.1206 -2.1322 -0.0005 33 1 0.5361 -2.3947 0.6031 34 1 2.0712 -3.2816 0.4438 35 1 1.9838 -2.9907 -2.0173 36 1 0.4487 -2.1038 -1.8578 37 1 0.3529 -4.7147 -0.6293 38 1 1.4478 -5.6786 -3.7091 39 1 1.3366 -3.9632 -4.1709 40 1 1.8871 -8.5445 -5.9315 41 1 -1.3970 -4.3871 -6.7638 42 1 -0.4042 -3.1444 -5.8302 43 1 1.7320 -4.3027 -6.5589 44 1 0.7402 -5.5460 -7.4925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450986220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:28 Heat of formation + Delta-G solvation = -39.285087 kcal Electronic energy + Delta-G solvation = -25223.830553 eV Core-core repulsion = 21654.359550 eV Total energy + Delta-G solvation = -3569.471003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.80521 -36.75095 -36.34155 -35.85333 -35.06879 -33.08172 -32.09782 -32.02740 -28.32340 -28.15642 -26.88427 -25.44404 -23.45313 -22.08106 -21.21349 -20.76680 -19.68513 -18.63850 -16.98942 -16.51800 -16.38753 -16.03124 -15.97395 -15.06337 -15.01763 -14.65787 -14.33062 -14.21898 -13.81785 -13.69343 -13.36288 -13.17757 -13.04612 -12.56385 -12.33134 -12.02707 -11.87730 -11.85132 -11.68743 -11.37966 -11.29156 -11.16333 -11.06566 -11.04442 -10.89719 -10.83074 -10.58417 -10.45581 -10.10891 -9.71720 -9.23021 -8.96755 -8.93601 -8.72055 -8.54492 -8.09486 -6.13566 -4.23629 1.04769 1.20321 1.23088 3.30455 3.36876 3.42135 3.45152 3.59116 4.39143 4.54381 4.60958 4.63087 4.79058 4.85275 4.91699 4.97766 5.07556 5.15524 5.16916 5.21428 5.36385 5.40715 5.50168 5.52466 5.64149 5.72414 5.73317 5.76524 5.94057 5.96826 6.06751 6.17838 6.26562 6.32915 6.34552 6.38772 6.51342 6.61620 6.71740 6.85167 6.98931 7.23368 7.28263 7.39464 7.81507 8.20684 8.82700 9.47903 10.94804 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.003124 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.418039 B = 8959.974116 C = 9131.718363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.083 4.083 8 C -0.089 4.089 9 C 0.120 3.880 10 N -1.134 6.134 11 S 2.606 3.394 12 O -0.975 6.975 13 O -0.949 6.949 14 C -0.553 4.553 15 C 0.042 3.958 16 C -0.511 4.511 17 H 0.069 0.931 18 C 0.080 3.920 19 N -0.875 5.875 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.210 4.210 25 C -0.140 4.140 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.411 0.589 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.262 0.738 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 14.942 12.033 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.083 4.083 8 C -0.127 4.127 9 C -0.006 4.006 10 N -0.891 5.891 11 S 2.703 3.297 12 O -0.965 6.965 13 O -0.939 6.939 14 C -0.687 4.687 15 C 0.039 3.961 16 C -0.548 4.548 17 H 0.087 0.913 18 C -0.125 4.125 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.247 4.247 25 C -0.179 4.179 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.244 0.756 38 H 0.153 0.847 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.724 14.835 11.897 19.594 hybrid contribution 0.653 -1.065 -0.022 1.250 sum 5.376 13.770 11.875 18.961 Atomic orbital electron populations 1.20957 0.91049 1.03750 1.02493 1.19850 0.96209 0.92587 0.99127 1.21036 0.94269 0.97452 1.01120 1.21125 0.94327 0.98028 1.00415 1.21117 0.99827 0.92537 1.00948 1.21093 0.93522 0.98339 0.99898 1.19650 0.93641 0.94251 1.00801 1.20796 1.00633 0.94326 0.96956 1.21223 0.96410 0.85730 0.97287 1.56004 1.70496 1.30125 1.32426 1.05142 0.76186 0.73760 0.74565 1.93490 1.65752 1.52970 1.84304 1.93559 1.74664 1.44637 1.81030 1.29978 1.15880 1.08257 1.14540 1.18300 0.98457 0.93575 0.85723 1.20555 0.94694 0.88610 1.50967 0.91293 1.24941 0.94669 0.98989 0.93862 1.70011 1.05979 1.29288 1.45777 0.86594 0.80371 0.82893 0.78448 1.20488 1.21037 1.19100 1.23219 0.98125 0.96267 1.07111 1.22538 0.93131 1.01789 1.00446 0.91087 0.91343 0.90425 0.86129 0.86265 0.86169 0.85861 0.89875 0.90153 0.91828 0.90218 0.75579 0.84733 0.88472 0.92813 0.89496 0.90655 0.91558 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.22 36.00 0.33 -0.84 16 2 C -0.08 -0.79 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 5 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 6 C -0.11 -1.07 9.68 -39.59 -0.38 -1.46 16 7 C -0.08 -0.86 5.13 -104.63 -0.54 -1.40 16 8 C -0.09 -0.89 4.79 -27.88 -0.13 -1.02 16 9 C 0.12 1.50 5.92 -4.04 -0.02 1.47 16 10 N -1.13 -16.49 5.88 -10.61 -0.06 -16.55 16 11 S 2.61 52.16 5.25 -107.50 -0.56 51.60 16 12 O -0.98 -21.11 17.50 -57.54 -1.01 -22.11 16 13 O -0.95 -22.56 17.52 -57.54 -1.01 -23.57 16 14 C -0.55 -11.58 5.93 37.16 0.22 -11.36 16 15 C 0.04 1.02 1.33 -155.66 -0.21 0.81 16 16 C -0.51 -14.02 8.01 -34.44 -0.28 -14.30 16 17 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 18 C 0.08 2.19 5.39 -17.82 -0.10 2.09 16 19 N -0.87 -24.10 12.93 55.43 0.72 -23.39 16 20 Si 0.89 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 24 C -0.21 -4.61 9.96 -26.69 -0.27 -4.87 16 25 C -0.14 -3.19 9.44 -26.69 -0.25 -3.44 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.08 0.80 5.41 -51.93 -0.28 0.52 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.08 0.79 7.01 -51.93 -0.36 0.42 16 34 H 0.08 0.70 8.05 -51.92 -0.42 0.28 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.05 6.43 -51.93 -0.33 0.71 16 37 H 0.41 5.13 8.62 -34.47 -0.30 4.83 16 38 H 0.13 2.93 8.14 -51.93 -0.42 2.51 16 39 H 0.10 1.72 8.09 -51.92 -0.42 1.30 16 40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 42 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -33.04 377.47 -11.41 -44.44 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.73 Total: 7.70 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: -3.42 Total: -40.23 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.65 Total: -39.94 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -2.01 Total: -45.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.56 Total: 51.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.04 -11.41 -44.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450986220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.159 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds