Wall clock time and date at job start Tue Mar 31 2020 14:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38318 * 119.92076 * 2 1 4 4 C 1.38080 * 120.07164 * 180.02562 * 3 2 1 5 5 C 1.38924 * 119.92613 * 0.02562 * 4 3 2 6 6 N 1.39681 * 120.07457 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00221 * 248.91682 * 6 5 4 8 8 S 1.65607 * 119.99665 * 68.91731 * 6 5 4 9 9 O 1.42094 * 104.27529 * 21.10885 * 8 6 5 10 10 O 1.42101 * 104.27694 * 148.96299 * 8 6 5 11 11 C 1.81396 * 104.44764 * 265.03432 * 8 6 5 12 12 C 1.53003 * 109.46692 * 171.50599 * 11 8 6 13 13 C 1.50701 * 115.54980 * 54.66536 * 12 11 8 14 14 H 1.08005 * 119.99391 * 264.95553 * 13 12 11 15 15 C 1.37870 * 120.00047 * 84.95763 * 13 12 11 16 16 N 1.31510 * 120.00364 * 358.67276 * 15 13 12 17 17 Si 1.86809 * 119.99807 * 178.67058 * 15 13 12 18 18 H 1.48496 * 109.46975 * 90.00084 * 17 15 13 19 19 H 1.48493 * 109.46987 * 210.00059 * 17 15 13 20 20 H 1.48500 * 109.46878 * 329.99879 * 17 15 13 21 21 C 1.53000 * 117.49964 * 268.98719 * 12 11 8 22 22 C 1.53006 * 117.49470 * 200.32859 * 12 11 8 23 23 C 1.38891 * 119.85507 * 0.25161 * 5 4 3 24 24 C 1.50694 * 120.04087 * 179.72546 * 23 5 4 25 25 C 1.38131 * 119.91821 * 359.47482 * 23 5 4 26 26 H 1.09001 * 109.47047 * 90.00338 * 1 2 3 27 27 H 1.08999 * 109.46644 * 209.99736 * 1 2 3 28 28 H 1.08998 * 109.47187 * 330.00354 * 1 2 3 29 29 H 1.07998 * 119.96012 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.03269 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47138 * 270.00022 * 7 6 5 32 32 H 1.08999 * 109.47131 * 150.00129 * 7 6 5 33 33 H 1.09002 * 109.46848 * 29.99990 * 7 6 5 34 34 H 1.08988 * 109.47275 * 291.50571 * 11 8 6 35 35 H 1.09000 * 109.46970 * 51.50976 * 11 8 6 36 36 H 0.97001 * 119.99971 * 185.04410 * 16 15 13 37 37 H 1.09001 * 117.50033 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.49831 * 145.02226 * 21 12 11 39 39 H 1.08996 * 117.49458 * 214.97888 * 22 12 11 40 40 H 1.08992 * 117.50078 * 359.97438 * 22 12 11 41 41 H 1.09004 * 109.47135 * 83.98345 * 24 23 5 42 42 H 1.08998 * 109.47247 * 203.97717 * 24 23 5 43 43 H 1.09002 * 109.47682 * 323.98087 * 24 23 5 44 44 H 1.07999 * 119.95885 * 180.27401 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5778 1.2025 -0.0005 5 6 4.2740 0.0003 -0.0016 6 7 5.6708 0.0003 -0.0027 7 6 6.4024 -0.4555 -1.1872 8 16 6.4998 0.5157 1.3351 9 8 5.5632 0.3926 2.3966 10 8 7.6969 -0.2498 1.3220 11 6 6.8574 2.2624 1.0009 12 6 7.4392 2.9132 2.2575 13 6 8.6501 2.2320 2.8411 14 1 8.5334 1.5150 3.6404 15 6 9.9067 2.5240 2.3548 16 7 10.0464 3.3774 1.3641 17 14 11.4109 1.7073 3.1033 18 1 11.6973 0.4415 2.3818 19 1 12.5778 2.6182 2.9872 20 1 11.1530 1.4132 4.5359 21 6 6.4587 3.5685 3.2323 22 6 7.3681 4.4382 2.3606 23 6 3.5781 -1.2017 -0.0074 24 6 4.3291 -2.5082 -0.0149 25 6 2.1968 -1.1982 -0.0012 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6550 2.1330 0.0004 30 1 4.1158 2.1389 -0.0010 31 1 6.5842 -1.5275 -1.1118 32 1 7.3548 0.0709 -1.2509 33 1 5.8126 -0.2489 -2.0803 34 1 7.5780 2.3363 0.1866 35 1 5.9371 2.7742 0.7195 36 1 10.9214 3.5279 0.9733 37 1 5.3991 3.5355 2.9786 38 1 6.6896 3.5071 4.2958 39 1 8.1970 4.9485 2.8510 40 1 6.9074 4.9776 1.5332 41 1 4.6043 -2.7749 1.0056 42 1 3.6958 -3.2889 -0.4361 43 1 5.2304 -2.4059 -0.6193 44 1 1.6551 -2.1324 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451088977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:50 Heat of formation + Delta-G solvation = -22.216887 kcal Electronic energy + Delta-G solvation = -26386.704277 eV Core-core repulsion = 22817.973407 eV Total energy + Delta-G solvation = -3568.730870 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79831 -36.76544 -36.27704 -36.09334 -35.03642 -32.74898 -32.05565 -31.58184 -28.23885 -27.44204 -27.18308 -25.52502 -24.71356 -22.30474 -21.19615 -20.70928 -19.52876 -18.61668 -17.25559 -16.61876 -16.38513 -15.86864 -15.03011 -14.91463 -14.85630 -14.52742 -14.02102 -13.83576 -13.72107 -13.64896 -13.26454 -13.19114 -12.99609 -12.51999 -12.31786 -12.14648 -12.08695 -11.83027 -11.67107 -11.46716 -11.22928 -11.11677 -11.05450 -11.02973 -10.93495 -10.88139 -10.54388 -10.45186 -10.13250 -9.74804 -9.24501 -9.01156 -8.71479 -8.55238 -8.20654 -8.08736 -6.16081 -4.29733 0.92618 1.36451 1.42266 3.27695 3.32008 3.37584 3.42052 3.69070 4.37569 4.59065 4.75874 4.81102 4.85491 4.92448 5.05118 5.13501 5.21941 5.26362 5.28253 5.47233 5.47781 5.51366 5.54227 5.63055 5.68417 5.75412 5.81099 5.85981 5.94406 5.97198 6.13310 6.25818 6.27063 6.33082 6.36116 6.57574 6.60448 6.64923 6.71594 6.76160 6.97131 7.19117 7.25095 7.41862 7.77057 8.17144 8.77320 9.44565 10.91405 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.004409 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.383296 B = 6349.049237 C = 7094.848088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.110 4.110 4 C -0.123 4.123 5 C 0.157 3.843 6 N -0.969 5.969 7 C 0.091 3.909 8 S 2.605 3.395 9 O -0.957 6.957 10 O -0.940 6.940 11 C -0.554 4.554 12 C 0.043 3.957 13 C -0.525 4.525 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.873 5.873 17 Si 0.890 3.110 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.205 4.205 22 C -0.137 4.137 23 C -0.078 4.078 24 C -0.123 4.123 25 C -0.111 4.111 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 -5.806 -7.874 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.143 4.143 5 C 0.063 3.937 6 N -0.798 5.798 7 C -0.053 4.053 8 S 2.704 3.296 9 O -0.948 6.948 10 O -0.931 6.931 11 C -0.687 4.687 12 C 0.040 3.960 13 C -0.562 4.562 14 H 0.085 0.915 15 C -0.119 4.119 16 N -0.508 5.508 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.242 4.242 22 C -0.176 4.176 23 C -0.081 4.081 24 C -0.179 4.179 25 C -0.130 4.130 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.454 -6.266 -7.251 17.342 hybrid contribution 0.903 0.318 -0.250 0.989 sum -13.551 -5.949 -7.501 16.592 Atomic orbital electron populations 1.20759 0.91206 1.02753 1.02060 1.19885 0.95994 0.93088 1.00277 1.20822 0.93308 0.97679 1.01060 1.21362 0.94845 0.97231 1.00881 1.17105 0.82326 0.92715 1.01507 1.55871 1.11249 1.80201 1.32483 1.21576 0.96249 1.00523 0.86946 1.05497 0.73259 0.78360 0.72465 1.93507 1.62751 1.86843 1.51658 1.93540 1.46731 1.68071 1.84710 1.30040 1.07720 1.21336 1.09643 1.18240 0.94924 0.93272 0.89547 1.20559 0.89426 1.25433 1.20809 0.91462 1.24937 0.98980 0.93444 0.94542 1.69983 1.24270 1.32847 1.23700 0.86589 0.81789 0.79648 0.80302 1.19719 1.21014 1.19364 1.23154 0.94865 1.08460 0.97729 1.22520 1.00294 0.94495 1.00269 1.20046 0.93740 0.94824 0.99503 1.20934 1.00428 0.93442 1.03094 1.20778 0.92797 0.97620 1.01788 0.91368 0.91647 0.91537 0.85693 0.85708 0.91995 0.90289 0.91146 0.85182 0.88450 0.92659 0.91040 0.89567 0.89382 0.91630 0.90904 0.91645 0.90592 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -1.07 5.88 -104.59 -0.62 -1.68 16 3 C -0.11 -1.37 9.69 -39.61 -0.38 -1.76 16 4 C -0.12 -1.80 9.86 -39.39 -0.39 -2.19 16 5 C 0.16 2.49 4.47 -83.79 -0.37 2.12 16 6 N -0.97 -16.31 2.70 -65.40 -0.18 -16.49 16 7 C 0.09 1.25 9.26 59.85 0.55 1.80 16 8 S 2.60 56.22 4.73 -107.50 -0.51 55.71 16 9 O -0.96 -22.63 17.15 -57.54 -0.99 -23.62 16 10 O -0.94 -23.13 16.76 -57.54 -0.96 -24.09 16 11 C -0.55 -11.88 6.11 37.16 0.23 -11.65 16 12 C 0.04 1.05 1.50 -155.65 -0.23 0.82 16 13 C -0.53 -14.56 7.68 -34.44 -0.26 -14.82 16 14 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 15 C 0.09 2.38 5.41 -17.82 -0.10 2.29 16 16 N -0.87 -24.08 12.79 55.43 0.71 -23.37 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.20 -4.56 9.93 -26.69 -0.26 -4.82 16 22 C -0.14 -3.14 9.33 -26.69 -0.25 -3.39 16 23 C -0.08 -1.11 5.88 -104.42 -0.61 -1.73 16 24 C -0.12 -1.54 9.68 36.00 0.35 -1.19 16 25 C -0.11 -1.36 9.32 -39.61 -0.37 -1.73 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.71 6.77 -52.49 -0.36 1.36 16 31 H 0.06 0.78 6.19 -51.93 -0.32 0.46 16 32 H 0.08 1.09 7.92 -51.93 -0.41 0.67 16 33 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.13 2.82 8.14 -51.93 -0.42 2.40 16 35 H 0.10 1.75 6.81 -51.92 -0.35 1.40 16 36 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.63 8.05 -51.93 -0.42 0.22 16 43 H 0.08 0.93 4.85 -51.93 -0.25 0.68 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -33.19 373.05 -10.41 -43.60 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.72 Total: 4.48 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: -2.36 Total: -38.49 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.53 Total: -39.86 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -1.95 Total: -47.71 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 56.22 SS G_CDS: -0.51 Total: 55.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.19 -10.41 -43.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451088977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.382 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds